RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 MMP19Q99542 508 aa18.17■□□□□ 0.5
SMARCA4-201ENST00000344626 CWC15Q9P013 229 aaKnown RBP18.17■□□□□ 0.5
SMARCA4-201ENST00000344626 LEKR1Q6ZMV7 388 aa18.16■□□□□ 0.5
SMARCA4-201ENST00000344626 C16orf45Q96MC5 204 aaPredicted RBP18.16■□□□□ 0.5
SMARCA4-201ENST00000344626 COMMD10Q9Y6G5 202 aa18.16■□□□□ 0.5
SMARCA4-201ENST00000344626 CETPP11597 493 aa18.16■□□□□ 0.5
SMARCA4-201ENST00000344626 RASEFQ8IZ41 740 aa18.16■□□□□ 0.5
SMARCA4-201ENST00000344626 MICAL1Q8TDZ2 1067 aa18.16■□□□□ 0.5
SMARCA4-201ENST00000344626 TRERF1Q96PN7 1200 aa18.16■□□□□ 0.5
SMARCA4-201ENST00000344626 NUB1Q9Y5A7 615 aa18.16■□□□□ 0.5
SMARCA4-201ENST00000344626 ADCK5Q3MIX3 580 aa18.16■□□□□ 0.5
SMARCA4-201ENST00000344626 PDXDC2PQ6P474 469 aa18.16■□□□□ 0.5
SMARCA4-201ENST00000344626 HHIPL2Q6UWX4 724 aa18.16■□□□□ 0.5
SMARCA4-201ENST00000344626 CCDC186Q7Z3E2 898 aa18.16■□□□□ 0.5
SMARCA4-201ENST00000344626 AKR1B1P15121 316 aa18.16■□□□□ 0.5
SMARCA4-201ENST00000344626 IFNAR1P17181 557 aa18.16■□□□□ 0.5
SMARCA4-201ENST00000344626 ATG9AQ7Z3C6 839 aa18.16■□□□□ 0.5
SMARCA4-201ENST00000344626 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.16■□□□□ 0.5
SMARCA4-201ENST00000344626 BCRP11274 1271 aa18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 ZSCAN20P17040 1043 aaPredicted RBP18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 ATF7P17544 494 aaPredicted RBP18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 TMEM47Q9BQJ4 181 aa18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 TSGA10Q9BZW7 698 aa18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 INCENPQ9NQS7 918 aa18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 ENTPD3O75355 529 aa18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 BRD1O95696 1058 aa18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 TNNI1P19237 187 aa18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 GJC1P36383 396 aa18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 MYOCDQ8IZQ8 938 aa18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 AK8Q96MA6 479 aa18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 SERPINA10Q9UK55 444 aa18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 COG2Q14746 738 aa18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 SERTAD1Q9UHV2 236 aa18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 CEMIPQ8WUJ3 1361 aa18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 BCL9O00512 1426 aa18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 TMEM110-MUSTN1A8MSY1 372 aa18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 FDX1P10109 184 aa18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 UBE2SQ16763 222 aa18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 FAM178BQ8IXR5 827 aa18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 PRMT6Q96LA8 375 aaPredicted RBP18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 GLIS2Q9BZE0 524 aaPredicted RBP18.15■□□□□ 0.5
SMARCA4-201ENST00000344626 AKR1B15C9JRZ8 316 aaPredicted RBP18.14■□□□□ 0.5
SMARCA4-201ENST00000344626 ABCD1P33897 745 aa18.14■□□□□ 0.5
SMARCA4-201ENST00000344626 COPB2P35606 906 aa18.14■□□□□ 0.5
SMARCA4-201ENST00000344626 SKIV2LQ15477 1246 aaKnown RBP18.14■□□□□ 0.5
SMARCA4-201ENST00000344626 STXBP2Q15833 593 aa18.14■□□□□ 0.5
SMARCA4-201ENST00000344626 KIAA1841Q6NSI8 718 aa18.14■□□□□ 0.5
SMARCA4-201ENST00000344626 CCDC50Q8IVM0 306 aa18.14■□□□□ 0.5
SMARCA4-201ENST00000344626 NELFBQ8WX92 580 aa18.14■□□□□ 0.5
SMARCA4-201ENST00000344626 CUEDC2Q9H467 287 aa18.14■□□□□ 0.5
SMARCA4-201ENST00000344626 SSX2IPQ9Y2D8 614 aa18.14■□□□□ 0.5
SMARCA4-201ENST00000344626 DISP2A7MBM2 1401 aa18.14■□□□□ 0.49
SMARCA4-201ENST00000344626 MTA3Q9BTC8 594 aa18.14■□□□□ 0.49
SMARCA4-201ENST00000344626 VPS16Q9H269 839 aa18.14■□□□□ 0.49
SMARCA4-201ENST00000344626 K7ENM7 598 aa18.14■□□□□ 0.49
SMARCA4-201ENST00000344626 CD19P15391 556 aa18.14■□□□□ 0.49
SMARCA4-201ENST00000344626 PTGDRQ13258 359 aa18.14■□□□□ 0.49
SMARCA4-201ENST00000344626 TSNARE1Q96NA8 513 aa18.14■□□□□ 0.49
SMARCA4-201ENST00000344626 KLRK1P26718 216 aa18.14■□□□□ 0.49
SMARCA4-201ENST00000344626 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.14■□□□□ 0.49
SMARCA4-201ENST00000344626 PANK4Q9NVE7 773 aa18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 NMT2O60551 498 aa18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 ALX1Q15699 326 aa18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 ASIC2Q16515 512 aa18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 SLC10A5Q5PT55 438 aa18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 RNF34Q969K3 372 aa18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 IQCDQ96DY2 449 aa18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 CCDC113Q9H0I3 377 aa18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 TNNC2P02585 160 aa18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 NBPF9Q3BBW0 867 aa18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 RCSD1Q6JBY9 416 aa18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 TDRD7Q8NHU6 1098 aaKnown RBP18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 MAK16Q9BXY0 300 aaKnown RBP18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 BLZF1Q9H2G9 400 aa18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 UQCRHLA0A096LP55 91 aa18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 UQCRHP07919 91 aa18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 CMA1P23946 247 aa18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 DYDC1Q8WWB3 177 aa18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 ZKSCAN4Q969J2 545 aaPredicted RBP18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 ABL1P00519 1130 aa18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 CEP170P1Q96L14 293 aa18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 SH3GLB2Q9NR46 395 aa18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 IKBKGQ9Y6K9 419 aa18.13■□□□□ 0.49
SMARCA4-201ENST00000344626 ACAD9Q9H845 621 aa18.12■□□□□ 0.49
SMARCA4-201ENST00000344626 PPLO60437 1756 aa18.12■□□□□ 0.49
SMARCA4-201ENST00000344626 ZNF710Q8N1W2 664 aa18.12■□□□□ 0.49
SMARCA4-201ENST00000344626 PDCL2Q8N4E4 241 aa18.12■□□□□ 0.49
SMARCA4-201ENST00000344626 FSD2A1L4K1 749 aa18.12■□□□□ 0.49
SMARCA4-201ENST00000344626 N4BP1O75113 896 aaKnown RBP18.12■□□□□ 0.49
SMARCA4-201ENST00000344626 PFKFB1P16118 471 aa18.12■□□□□ 0.49
SMARCA4-201ENST00000344626 MTERF2Q49AM1 385 aa18.12■□□□□ 0.49
SMARCA4-201ENST00000344626 CTR9Q6PD62 1173 aa18.12■□□□□ 0.49
SMARCA4-201ENST00000344626 NSUN6Q8TEA1 469 aaKnown RBP18.12■□□□□ 0.49
SMARCA4-201ENST00000344626 TBCKQ8TEA7 893 aa18.12■□□□□ 0.49
SMARCA4-201ENST00000344626 NLRP7Q8WX94 980 aa18.12■□□□□ 0.49
SMARCA4-201ENST00000344626 BBXQ8WY36 941 aaPredicted RBP18.12■□□□□ 0.49
SMARCA4-201ENST00000344626 PARP2Q9UGN5 583 aa18.12■□□□□ 0.49
SMARCA4-201ENST00000344626 PLCB3Q01970 1234 aa18.12■□□□□ 0.49
SMARCA4-201ENST00000344626 AP3B2Q13367 1082 aa18.12■□□□□ 0.49
SMARCA4-201ENST00000344626 IGSF22Q8N9C0 903 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms