RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 SNRNP48Q6IEG0 339 aaKnown RBP11.42□□□□□ -0.58
HMGB3-201ENST00000325307 JMYQ8N9B5 988 aa11.42□□□□□ -0.58
HMGB3-201ENST00000325307 ABT1Q9ULW3 272 aaKnown RBP11.42□□□□□ -0.58
HMGB3-201ENST00000325307 ZNF536O15090 1300 aa11.42□□□□□ -0.58
HMGB3-201ENST00000325307 ELP1O95163 1332 aa11.42□□□□□ -0.58
HMGB3-201ENST00000325307 CCL15-CCL14A0A0B4J2E2 113 aa11.42□□□□□ -0.58
HMGB3-201ENST00000325307 GCOM1H8Y6P7 765 aaPredicted RBP11.42□□□□□ -0.58
HMGB3-201ENST00000325307 POLR2MP0CAP2 368 aa11.42□□□□□ -0.58
HMGB3-201ENST00000325307 OSBPP22059 807 aa11.42□□□□□ -0.58
HMGB3-201ENST00000325307 TRAPPC10P48553 1259 aa11.42□□□□□ -0.58
HMGB3-201ENST00000325307 CCL15Q16663 113 aa11.42□□□□□ -0.58
HMGB3-201ENST00000325307 PAGR1Q9BTK6 254 aa11.42□□□□□ -0.58
HMGB3-201ENST00000325307 ASCC2Q9H1I8 757 aaPredicted RBP11.42□□□□□ -0.58
HMGB3-201ENST00000325307 PNMA2Q9UL42 364 aa11.42□□□□□ -0.58
HMGB3-201ENST00000325307 SLC39A14Q15043 492 aa11.42□□□□□ -0.58
HMGB3-201ENST00000325307 SPRYD7Q5W111 196 aa11.42□□□□□ -0.58
HMGB3-201ENST00000325307 NEK8Q86SG6 692 aa11.42□□□□□ -0.58
HMGB3-201ENST00000325307 P2RX7Q99572 595 aaKnown RBP11.42□□□□□ -0.58
HMGB3-201ENST00000325307 MYPNQ86TC9 1320 aa11.41□□□□□ -0.58
HMGB3-201ENST00000325307 CCNT1O60563 726 aaKnown RBP11.41□□□□□ -0.58
HMGB3-201ENST00000325307 YY1P25490 414 aa11.41□□□□□ -0.58
HMGB3-201ENST00000325307 HOXA7P31268 230 aaPredicted RBP11.41□□□□□ -0.58
HMGB3-201ENST00000325307 TRERF1Q96PN7 1200 aa11.41□□□□□ -0.58
HMGB3-201ENST00000325307 WNT7AO00755 349 aa11.41□□□□□ -0.58
HMGB3-201ENST00000325307 MEIS2O14770 477 aa11.41□□□□□ -0.58
HMGB3-201ENST00000325307 TMEM132BQ14DG7 1078 aa11.41□□□□□ -0.58
HMGB3-201ENST00000325307 NSMFQ6X4W1 530 aa11.41□□□□□ -0.58
HMGB3-201ENST00000325307 TBC1D5Q92609 795 aa11.41□□□□□ -0.58
HMGB3-201ENST00000325307 TEX13BQ9BXU2 312 aa11.41□□□□□ -0.58
HMGB3-201ENST00000325307 NFIBO00712 420 aa11.41□□□□□ -0.58
HMGB3-201ENST00000325307 OPLAHO14841 1288 aa11.41□□□□□ -0.58
HMGB3-201ENST00000325307 MBD3O95983 291 aa11.41□□□□□ -0.58
HMGB3-201ENST00000325307 STAT3P40763 770 aa11.41□□□□□ -0.58
HMGB3-201ENST00000325307 HERVK_113P62684 666 aa11.41□□□□□ -0.58
HMGB3-201ENST00000325307 GRM1Q13255 1194 aa11.41□□□□□ -0.58
HMGB3-201ENST00000325307 ANO3Q9BYT9 981 aa11.41□□□□□ -0.58
HMGB3-201ENST00000325307 RNF146Q9NTX7 359 aa11.41□□□□□ -0.58
HMGB3-201ENST00000325307 PCDHA7Q9UN72 937 aa11.41□□□□□ -0.58
HMGB3-201ENST00000325307 TOMM70O94826 608 aa11.4□□□□□ -0.58
HMGB3-201ENST00000325307 BMP15O95972 392 aa11.4□□□□□ -0.58
HMGB3-201ENST00000325307 ZBTB48P10074 688 aaPredicted RBP11.4□□□□□ -0.58
HMGB3-201ENST00000325307 CLK2P49760 499 aaKnown RBP11.4□□□□□ -0.58
HMGB3-201ENST00000325307 AP3B2Q13367 1082 aa11.4□□□□□ -0.58
HMGB3-201ENST00000325307 PTPAQ15257 358 aa11.4□□□□□ -0.58
HMGB3-201ENST00000325307 MUM1L1Q5H9M0 696 aa11.4□□□□□ -0.58
HMGB3-201ENST00000325307 SAPCD2Q86UD0 394 aa11.4□□□□□ -0.58
HMGB3-201ENST00000325307 MCF2L2Q86YR7 1114 aa11.4□□□□□ -0.58
HMGB3-201ENST00000325307 SMCR8Q8TEV9 937 aaPredicted RBP11.4□□□□□ -0.58
HMGB3-201ENST00000325307 PEX10O60683 326 aa11.4□□□□□ -0.58
HMGB3-201ENST00000325307 FOSP01100 380 aaPredicted RBP11.4□□□□□ -0.58
HMGB3-201ENST00000325307 OAZ1P54368 228 aa11.4□□□□□ -0.58
HMGB3-201ENST00000325307 PTGDRQ13258 359 aa11.4□□□□□ -0.58
HMGB3-201ENST00000325307 MOGSQ13724 837 aa11.4□□□□□ -0.58
HMGB3-201ENST00000325307 MCTP2Q6DN12 878 aa11.4□□□□□ -0.58
HMGB3-201ENST00000325307 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.4□□□□□ -0.58
HMGB3-201ENST00000325307 PNMA3Q9UL41 463 aa11.4□□□□□ -0.58
HMGB3-201ENST00000325307 ADAMTS5Q9UNA0 930 aa11.4□□□□□ -0.58
HMGB3-201ENST00000325307 PASKQ96RG2 1323 aa11.4□□□□□ -0.58
HMGB3-201ENST00000325307 GPAT2Q6NUI2 795 aa11.39□□□□□ -0.59
HMGB3-201ENST00000325307 MB21D1Q8N884 522 aa11.39□□□□□ -0.59
HMGB3-201ENST00000325307 MS4A4AQ96JQ5 239 aa11.39□□□□□ -0.59
HMGB3-201ENST00000325307 ZNF214Q9UL59 606 aaPredicted RBP11.39□□□□□ -0.59
HMGB3-201ENST00000325307 RIPK3Q9Y572 518 aa11.39□□□□□ -0.59
HMGB3-201ENST00000325307 MRVI1Q9Y6F6 885 aa11.39□□□□□ -0.59
HMGB3-201ENST00000325307 PTPRFP10586 1907 aa11.39□□□□□ -0.59
HMGB3-201ENST00000325307 PDHXO00330 501 aa11.39□□□□□ -0.59
HMGB3-201ENST00000325307 CDK11BP21127 795 aaKnown RBP11.39□□□□□ -0.59
HMGB3-201ENST00000325307 RGMBQ6NW40 437 aa11.39□□□□□ -0.59
HMGB3-201ENST00000325307 KRI1Q8N9T8 703 aaKnown RBP11.39□□□□□ -0.59
HMGB3-201ENST00000325307 REPS2Q8NFH8 660 aa11.39□□□□□ -0.59
HMGB3-201ENST00000325307 BRI3BPQ8WY22 251 aa11.39□□□□□ -0.59
HMGB3-201ENST00000325307 SYCE3A1L190 88 aa11.39□□□□□ -0.59
HMGB3-201ENST00000325307 BTBD19C9JJ37 291 aa11.39□□□□□ -0.59
HMGB3-201ENST00000325307 CYP2C8P10632 490 aa11.39□□□□□ -0.59
HMGB3-201ENST00000325307 LBX2Q6XYB7 198 aa11.39□□□□□ -0.59
HMGB3-201ENST00000325307 CLEC4DQ8WXI8 215 aa11.39□□□□□ -0.59
HMGB3-201ENST00000325307 RBSNQ9H1K0 784 aa11.39□□□□□ -0.59
HMGB3-201ENST00000325307 EHMT1Q9H9B1 1298 aa11.39□□□□□ -0.59
HMGB3-201ENST00000325307 SMCHD1A6NHR9 2005 aa11.39□□□□□ -0.59
HMGB3-201ENST00000325307 PIK3CDO00329 1044 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 PPP6R2O75170 966 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 RASAL3Q86YV0 1011 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 CCAR1Q8IX12 1150 aaKnown RBP11.38□□□□□ -0.59
HMGB3-201ENST00000325307 CLIC6Q96NY7 704 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 TMEM88BA6NKF7 163 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 MARCH6O60337 910 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 NEMFO60524 1076 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 ZNF76P36508 570 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 UBXN2AP68543 259 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 ARHGAP4P98171 946 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 WDR78Q5VTH9 848 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 RNF207Q6ZRF8 634 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 CCDC73Q6ZRK6 1079 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 NCAPG2Q86XI2 1143 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 FSIP1Q8NA03 581 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 PDCL3Q9H2J4 239 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 BTBD7Q9P203 1132 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 TRPM7Q96QT4 1865 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 TDP2O95551 362 aa11.38□□□□□ -0.59
HMGB3-201ENST00000325307 TPM2P07951 284 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms