RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 RIC8AQ9NPQ8 531 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 GDAQ9Y2T3 454 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 PAEPP09466 180 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 GBP1P32455 592 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 CLNS1AP54105 237 aaKnown RBP5.28□□□□□ -1.56
PTPN13-201ENST00000316707 PPARAQ07869 468 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 GIGYF2Q6Y7W6 1299 aaKnown RBP5.28□□□□□ -1.56
PTPN13-201ENST00000316707 MAB21L3Q8N8X9 362 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 TBC1D22AQ8WUA7 517 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 ZSCAN10Q96SZ4 725 aaPredicted RBP5.28□□□□□ -1.56
PTPN13-201ENST00000316707 RAB34Q9BZG1 259 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 BLZF1Q9H2G9 400 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 VPS54Q9P1Q0 977 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 RICTORQ6R327 1708 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 A0A0U1RQJ8 604 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 GSG1L2A8MUP6 293 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 E7EVH7 732 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 GUCY2DQ02846 1103 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 C2orf54Q08AI8 447 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 VPS36Q86VN1 386 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 C2CD5Q86YS7 1000 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 SPATA5Q8NB90 893 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 CYFIP2Q96F07 1278 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 PBKQ96KB5 322 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 TSG101Q99816 390 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 TLR10Q9BXR5 811 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 ISCUQ9H1K1 167 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 NDST4Q9H3R1 872 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 SLC40A1Q9NP59 571 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 LRWD1Q9UFC0 647 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 CYP27B1O15528 508 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 ATP1A2P50993 1020 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 HLTFQ14527 1009 aaKnown RBP eCLIP5.28□□□□□ -1.56
PTPN13-201ENST00000316707 TTMPQ5BVD1 217 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 APLFQ8IW19 511 aaPredicted RBP5.28□□□□□ -1.56
PTPN13-201ENST00000316707 CENPHQ9H3R5 247 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 FAM114A2Q9NRY5 505 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 A0A087X0B3 334 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 B4DLN1 442 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 ABL1P00519 1130 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 LRRC63Q05C16 580 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 XRCC4Q13426 336 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 SEC23AQ15436 765 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 ODF2Q5BJF6 829 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 IFIT1BQ5T764 474 aaKnown RBP5.28□□□□□ -1.56
PTPN13-201ENST00000316707 CYB5D1Q6P9G0 228 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 GUF1Q8N442 669 aaKnown RBP5.28□□□□□ -1.56
PTPN13-201ENST00000316707 CCDC26Q8TAB7 109 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 TNFRSF25Q93038 417 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 CNOT6LQ96LI5 555 aaKnown RBP5.28□□□□□ -1.56
PTPN13-201ENST00000316707 RNPC3Q96LT9 517 aaKnown RBP5.28□□□□□ -1.56
PTPN13-201ENST00000316707 EPB41L5Q9HCM4 733 aa5.28□□□□□ -1.56
PTPN13-201ENST00000316707 CCDC169A6NNP5 214 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 EIF4A3P38919 411 aaKnown RBP5.27□□□□□ -1.57
PTPN13-201ENST00000316707 TROAPQ12815 778 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 HOOK3Q86VS8 718 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 BRIP1Q9BX63 1249 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 TAF1DQ9H5J8 278 aaPredicted RBP5.27□□□□□ -1.57
PTPN13-201ENST00000316707 SLITRK6Q9H5Y7 841 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 SENP2Q9HC62 589 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 MCM8Q9UJA3 840 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 DISP2A7MBM2 1401 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 TCHHQ07283 1943 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 ASIC1P78348 528 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 KCTD16Q68DU8 428 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 PI16Q6UXB8 463 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 IFT81Q8WYA0 676 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 N4BP2L2Q92802 583 aaPredicted RBP5.27□□□□□ -1.57
PTPN13-201ENST00000316707 CENPTQ96BT3 561 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 EPB41L4AQ9HCS5 686 aaPredicted RBP5.27□□□□□ -1.57
PTPN13-201ENST00000316707 NFU1Q9UMS0 254 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 MYO1FO00160 1098 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 ITGA6P23229 1130 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 CTNNA1P35221 906 aaKnown RBP5.27□□□□□ -1.57
PTPN13-201ENST00000316707 PDE4DQ08499 809 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 SEPT2Q15019 361 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 RPS6KA1Q15418 735 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 LRCH2Q5VUJ6 765 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 CYB5RLQ6IPT4 315 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 BCL9LQ86UU0 1499 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 CCDC197Q8NCU1 140 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 ZBTB9Q96C00 473 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 SEC31BQ9NQW1 1179 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 HOMER3Q9NSC5 361 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 BMP2KQ9NSY1 1161 aaPredicted RBP5.27□□□□□ -1.57
PTPN13-201ENST00000316707 SAMD15Q9P1V8 674 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 BZW2Q9Y6E2 419 aaKnown RBP5.27□□□□□ -1.57
PTPN13-201ENST00000316707 FLOT1O75955 427 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 STARD3NLO95772 234 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 CTDSPL2Q05D32 466 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 FUT2Q10981 343 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 BYSLQ13895 437 aaKnown RBP5.27□□□□□ -1.57
PTPN13-201ENST00000316707 TDRD12Q587J7 1177 aaKnown RBP5.27□□□□□ -1.57
PTPN13-201ENST00000316707 PIK3AP1Q6ZUJ8 805 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 BLIDQ8IZY5 108 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 PROM2Q8N271 834 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 CALML4Q96GE6 196 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 TMBIM4Q9HC24 238 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 STK17AQ9UEE5 414 aa5.27□□□□□ -1.57
PTPN13-201ENST00000316707 TRAPPC3O43617 180 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms