RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ZNF713Q8N859 430 aaPredicted RBP22.51■■□□□ 1.19
VPS53-201ENST00000291074 MAGEF1Q9HAY2 307 aa22.51■■□□□ 1.19
VPS53-201ENST00000291074 DDX41Q9UJV9 622 aaKnown RBP22.51■■□□□ 1.19
VPS53-201ENST00000291074 USP17L10C9JJH3 530 aa22.5■■□□□ 1.19
VPS53-201ENST00000291074 ABL1P00519 1130 aa22.5■■□□□ 1.19
VPS53-201ENST00000291074 CRKP46108 304 aa22.5■■□□□ 1.19
VPS53-201ENST00000291074 KIAA0825Q8IV33 1275 aa22.5■■□□□ 1.19
VPS53-201ENST00000291074 ZNF622Q969S3 477 aaKnown RBP eCLIP22.5■■□□□ 1.198e-8■■■■□ 21.7
VPS53-201ENST00000291074 C7orf25Q9BPX7 421 aa22.5■■□□□ 1.19
VPS53-201ENST00000291074 DNAJC18Q9H819 358 aa22.5■■□□□ 1.19
VPS53-201ENST00000291074 LRWD1Q9UFC0 647 aa22.5■■□□□ 1.19
VPS53-201ENST00000291074 SIPA1L1O43166 1804 aa22.5■■□□□ 1.19
VPS53-201ENST00000291074 SCN9AQ15858 1988 aa22.5■■□□□ 1.19
VPS53-201ENST00000291074 LGALS16A8MUM7 142 aa22.5■■□□□ 1.19
VPS53-201ENST00000291074 RAD21O60216 631 aa22.5■■□□□ 1.19
VPS53-201ENST00000291074 ALDH1B1P30837 517 aa22.5■■□□□ 1.19
VPS53-201ENST00000291074 MAP3K9P80192 1104 aa22.5■■□□□ 1.19
VPS53-201ENST00000291074 HHIPL2Q6UWX4 724 aa22.5■■□□□ 1.19
VPS53-201ENST00000291074 CSGALNACT2Q8N6G5 542 aa22.5■■□□□ 1.19
VPS53-201ENST00000291074 MB21D1Q8N884 522 aa22.5■■□□□ 1.19
VPS53-201ENST00000291074 GJA10Q969M2 543 aa22.5■■□□□ 1.19
VPS53-201ENST00000291074 CALML4Q96GE6 196 aa22.5■■□□□ 1.19
VPS53-201ENST00000291074 PNMA5Q96PV4 448 aa22.5■■□□□ 1.19
VPS53-201ENST00000291074 THAP9Q9H5L6 903 aa22.5■■□□□ 1.19
VPS53-201ENST00000291074 PNMA6FA0A0J9YX94 578 aa22.49■■□□□ 1.19
VPS53-201ENST00000291074 HLA-DOAP06340 250 aa22.49■■□□□ 1.19
VPS53-201ENST00000291074 UBXN4Q92575 508 aa22.49■■□□□ 1.19
VPS53-201ENST00000291074 AKT1S1Q96B36 256 aa22.49■■□□□ 1.19
VPS53-201ENST00000291074 NUDT12Q9BQG2 462 aa22.49■■□□□ 1.19
VPS53-201ENST00000291074 EPC1Q9H2F5 836 aa22.49■■□□□ 1.19
VPS53-201ENST00000291074 BLOC1S4Q9NUP1 217 aa22.49■■□□□ 1.19
VPS53-201ENST00000291074 ZNF446Q9NWS9 450 aa22.49■■□□□ 1.19
VPS53-201ENST00000291074 MRFAP1Q9Y605 127 aa22.49■■□□□ 1.19
VPS53-201ENST00000291074 H2AFXP16104 143 aaPredicted RBP22.49■■□□□ 1.19
VPS53-201ENST00000291074 MCM6Q14566 821 aa22.49■■□□□ 1.19
VPS53-201ENST00000291074 ANKRD40Q6AI12 368 aa22.49■■□□□ 1.19
VPS53-201ENST00000291074 P2RX5Q93086 422 aa22.49■■□□□ 1.19
VPS53-201ENST00000291074 ZNF219Q9P2Y4 722 aaPredicted RBP22.49■■□□□ 1.19
VPS53-201ENST00000291074 TTC26A0AVF1 554 aa22.48■■□□□ 1.19
VPS53-201ENST00000291074 B4DLN1 442 aa22.48■■□□□ 1.19
VPS53-201ENST00000291074 EEF1GP26641 437 aaKnown RBP22.48■■□□□ 1.19
VPS53-201ENST00000291074 KIAA0895Q8NCT3 520 aa22.48■■□□□ 1.19
VPS53-201ENST00000291074 ZNF507Q8TCN5 953 aa22.48■■□□□ 1.19
VPS53-201ENST00000291074 DHTKD1Q96HY7 919 aaPredicted RBP22.48■■□□□ 1.19
VPS53-201ENST00000291074 CHP1Q99653 195 aa22.48■■□□□ 1.19
VPS53-201ENST00000291074 NKRFO15226 690 aaKnown RBP eCLIP22.48■■□□□ 1.19
VPS53-201ENST00000291074 PDE6BP35913 854 aa22.48■■□□□ 1.19
VPS53-201ENST00000291074 TMTC1Q8IUR5 882 aa22.48■■□□□ 1.19
VPS53-201ENST00000291074 MASTLQ96GX5 879 aa22.48■■□□□ 1.19
VPS53-201ENST00000291074 UIMC1Q96RL1 719 aa22.48■■□□□ 1.19
VPS53-201ENST00000291074 RIC8AQ9NPQ8 531 aa22.48■■□□□ 1.19
VPS53-201ENST00000291074 OGFRQ9NZT2 677 aa22.48■■□□□ 1.19
VPS53-201ENST00000291074 MAGEC2Q9UBF1 373 aaPredicted RBP22.48■■□□□ 1.19
VPS53-201ENST00000291074 MYO3BQ8WXR4 1341 aa22.47■■□□□ 1.19
VPS53-201ENST00000291074 CCNE1P24864 410 aa22.47■■□□□ 1.19
VPS53-201ENST00000291074 ORC2Q13416 577 aaPredicted RBP22.47■■□□□ 1.19
VPS53-201ENST00000291074 TRIM14Q14142 442 aa22.47■■□□□ 1.19
VPS53-201ENST00000291074 CCDC47Q96A33 483 aaKnown RBP22.47■■□□□ 1.19
VPS53-201ENST00000291074 SLC39A2Q9NP94 309 aa22.47■■□□□ 1.19
VPS53-201ENST00000291074 MYMKA6NI61 221 aa22.47■■□□□ 1.19
VPS53-201ENST00000291074 FXR2P51116 673 aaKnown RBP eCLIP22.47■■□□□ 1.19
VPS53-201ENST00000291074 PPP2R3AQ06190 1150 aa22.47■■□□□ 1.19
VPS53-201ENST00000291074 DYMQ7RTS9 669 aa22.47■■□□□ 1.19
VPS53-201ENST00000291074 ARFGEF1Q9Y6D6 1849 aa22.47■■□□□ 1.19
VPS53-201ENST00000291074 SLF1Q9BQI6 1058 aa22.46■■□□□ 1.19
VPS53-201ENST00000291074 DDTLA6NHG4 134 aaPredicted RBP22.46■■□□□ 1.19
VPS53-201ENST00000291074 CLCN6P51797 869 aa22.46■■□□□ 1.19
VPS53-201ENST00000291074 CYP26C1Q6V0L0 522 aa22.46■■□□□ 1.19
VPS53-201ENST00000291074 SV2BQ7L1I2 683 aa22.46■■□□□ 1.19
VPS53-201ENST00000291074 KCNK18Q7Z418 384 aa22.46■■□□□ 1.19
VPS53-201ENST00000291074 TUBGCP2Q9BSJ2 902 aa22.46■■□□□ 1.19
VPS53-201ENST00000291074 TMX4Q9H1E5 349 aaPredicted RBP22.46■■□□□ 1.19
VPS53-201ENST00000291074 EFCAB8A8MWE9 144 aa22.45■■□□□ 1.19
VPS53-201ENST00000291074 KLK7P49862 253 aa22.45■■□□□ 1.19
VPS53-201ENST00000291074 RBM5P52756 815 aaKnown RBP eCLIP22.45■■□□□ 1.19
VPS53-201ENST00000291074 AMPD3Q01432 767 aa22.45■■□□□ 1.19
VPS53-201ENST00000291074 TMEM266Q2M3C6 531 aa22.45■■□□□ 1.19
VPS53-201ENST00000291074 ZNF569Q5MCW4 686 aa22.45■■□□□ 1.19
VPS53-201ENST00000291074 SNX29Q8TEQ0 813 aa22.45■■□□□ 1.19
VPS53-201ENST00000291074 CDK5RAP3Q96JB5 506 aa22.45■■□□□ 1.19
VPS53-201ENST00000291074 CNOT6LQ96LI5 555 aaKnown RBP22.45■■□□□ 1.19
VPS53-201ENST00000291074 ZBTB5O15062 677 aa22.45■■□□□ 1.18
VPS53-201ENST00000291074 KIF5CO60282 957 aa22.45■■□□□ 1.18
VPS53-201ENST00000291074 APBA3O96018 575 aa22.45■■□□□ 1.18
VPS53-201ENST00000291074 CLK2P49760 499 aaKnown RBP22.45■■□□□ 1.18
VPS53-201ENST00000291074 LARP4BQ92615 738 aaKnown RBP22.45■■□□□ 1.18
VPS53-201ENST00000291074 CUL5Q93034 780 aa22.45■■□□□ 1.18
VPS53-201ENST00000291074 GPATCH4Q5T3I0 446 aaKnown RBP22.44■■□□□ 1.18
VPS53-201ENST00000291074 ZDHHC15Q96MV8 337 aa22.44■■□□□ 1.18
VPS53-201ENST00000291074 C10orf71Q711Q0 1435 aa22.44■■□□□ 1.18
VPS53-201ENST00000291074 A0A0U1RQG5 324 aaPredicted RBP22.44■■□□□ 1.18
VPS53-201ENST00000291074 SEMA3FQ13275 785 aa22.44■■□□□ 1.18
VPS53-201ENST00000291074 PPP1R18Q6NYC8 613 aa22.44■■□□□ 1.18
VPS53-201ENST00000291074 SMAP1Q8IYB5 467 aaPredicted RBP22.44■■□□□ 1.18
VPS53-201ENST00000291074 SEMA6BQ9H3T3 888 aa22.44■■□□□ 1.18
VPS53-201ENST00000291074 SLX4Q8IY92 1834 aa22.44■■□□□ 1.18
VPS53-201ENST00000291074 A0A1W2PQC6 194 aa22.44■■□□□ 1.18
VPS53-201ENST00000291074 EEF2P13639 858 aaKnown RBP22.44■■□□□ 1.18
VPS53-201ENST00000291074 ECM1Q16610 540 aa22.44■■□□□ 1.18
VPS53-201ENST00000291074 SH3BP5LQ7L8J4 393 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms