RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 GRIN1Q05586 938 aa9.47□□□□□ -0.89
NIPBL-201ENST00000282516 ZKSCAN8Q15776 578 aaPredicted RBP9.47□□□□□ -0.89
NIPBL-201ENST00000282516 KRT28Q7Z3Y7 464 aa9.47□□□□□ -0.89
NIPBL-201ENST00000282516 GGA1Q9UJY5 639 aa9.47□□□□□ -0.89
NIPBL-201ENST00000282516 RRP15Q9Y3B9 282 aaKnown RBP9.47□□□□□ -0.89
NIPBL-201ENST00000282516 TOM1L1O75674 476 aa9.46□□□□□ -0.89
NIPBL-201ENST00000282516 GRAMD1BQ3KR37 738 aa9.46□□□□□ -0.89
NIPBL-201ENST00000282516 ARHGEF16Q5VV41 709 aa9.46□□□□□ -0.89
NIPBL-201ENST00000282516 OTUB1Q96FW1 271 aaPredicted RBP9.46□□□□□ -0.89
NIPBL-201ENST00000282516 BICC1Q9H694 974 aaKnown RBP9.46□□□□□ -0.89
NIPBL-201ENST00000282516 NLRC4Q9NPP4 1024 aa9.46□□□□□ -0.89
NIPBL-201ENST00000282516 RIMBP2O15034 1052 aa9.46□□□□□ -0.89
NIPBL-201ENST00000282516 TAC1P20366 129 aa9.46□□□□□ -0.89
NIPBL-201ENST00000282516 PDE6BP35913 854 aa9.46□□□□□ -0.89
NIPBL-201ENST00000282516 GUCY2DQ02846 1103 aa9.46□□□□□ -0.89
NIPBL-201ENST00000282516 TMED2Q15363 201 aa9.46□□□□□ -0.89
NIPBL-201ENST00000282516 AKAP4Q5JQC9 854 aa9.46□□□□□ -0.89
NIPBL-201ENST00000282516 PHKBQ93100 1093 aa9.46□□□□□ -0.89
NIPBL-201ENST00000282516 DPH5Q9H2P9 285 aa9.46□□□□□ -0.89
NIPBL-201ENST00000282516 TFCP2L1Q9NZI6 479 aa9.46□□□□□ -0.89
NIPBL-201ENST00000282516 JAG2Q9Y219 1238 aa9.46□□□□□ -0.89
NIPBL-201ENST00000282516 PLEKHA4Q9H4M7 779 aa9.46□□□□□ -0.89
NIPBL-201ENST00000282516 SLC27A2O14975 620 aa9.46□□□□□ -0.89
NIPBL-201ENST00000282516 TLR3O15455 904 aaKnown RBP9.46□□□□□ -0.89
NIPBL-201ENST00000282516 TEDDM1Q5T9Z0 273 aa9.46□□□□□ -0.89
NIPBL-201ENST00000282516 C17orf53Q8N3J3 647 aaPredicted RBP9.46□□□□□ -0.89
NIPBL-201ENST00000282516 RNF169Q8NCN4 708 aa9.46□□□□□ -0.89
NIPBL-201ENST00000282516 TCP11Q8WWU5 503 aa9.46□□□□□ -0.89
NIPBL-201ENST00000282516 CHCHD3Q9NX63 227 aaKnown RBP9.46□□□□□ -0.89
NIPBL-201ENST00000282516 SYNJ2BP-COX16A0A087WUM0 186 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 ARHGEF37A1IGU5 675 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 OCRLQ01968 901 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 TFDP1Q14186 410 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 CEP85Q6P2H3 762 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 COX16Q9P0S2 106 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 PPP2R2CQ9Y2T4 447 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 SKOR1P84550 965 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 DAB2P98082 770 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 MYL7Q01449 175 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 THOC5Q13769 683 aaKnown RBP9.46□□□□□ -0.9
NIPBL-201ENST00000282516 FAM160B1Q5W0V3 765 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 DYMQ7RTS9 669 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 KRT26Q7Z3Y9 468 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 EPAS1Q99814 870 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 XPO4Q9C0E2 1151 aaKnown RBP9.46□□□□□ -0.9
NIPBL-201ENST00000282516 HAUS4Q9H6D7 363 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 DISC1Q9NRI5 854 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 ZSCAN32Q9NX65 697 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 ECEL1O95672 775 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 POLE2P56282 527 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 EIF6P56537 245 aaKnown RBP9.46□□□□□ -0.9
NIPBL-201ENST00000282516 SLMAPQ14BN4 828 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 TRIM67Q6ZTA4 783 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 XPOTO43592 962 aaKnown RBP9.46□□□□□ -0.9
NIPBL-201ENST00000282516 ABCD1P33897 745 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 IFRD2Q12894 506 aaPredicted RBP9.46□□□□□ -0.9
NIPBL-201ENST00000282516 TAF1BQ53T94 588 aaPredicted RBP9.46□□□□□ -0.9
NIPBL-201ENST00000282516 SLC8A2Q9UPR5 921 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 FLT4P35916 1363 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 E2F6O75461 281 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 DLATP10515 647 aaKnown RBP9.46□□□□□ -0.9
NIPBL-201ENST00000282516 HOXA7P31268 230 aaPredicted RBP9.46□□□□□ -0.9
NIPBL-201ENST00000282516 PNOCQ13519 176 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 TNFAIP1Q13829 316 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 PTK2BQ14289 1009 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 ELMSAN1Q6PJG2 1045 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 FAM178BQ8IXR5 827 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 MRPL50Q8N5N7 158 aaKnown RBP9.46□□□□□ -0.9
NIPBL-201ENST00000282516 SLC38A10Q9HBR0 1119 aa9.46□□□□□ -0.9
NIPBL-201ENST00000282516 POC1B-GALNT4F8VUJ3 575 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 IL2RBP14784 551 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 DESI2Q9BSY9 194 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 DYNC1I2Q13409 638 aaKnown RBP9.45□□□□□ -0.9
NIPBL-201ENST00000282516 KAZNQ674X7 775 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 PPP4R4Q6NUP7 873 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 N4BP2L2Q92802 583 aaPredicted RBP9.45□□□□□ -0.9
NIPBL-201ENST00000282516 DIABLOQ9NR28 239 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 WARS2Q9UGM6 360 aaKnown RBP9.45□□□□□ -0.9
NIPBL-201ENST00000282516 PA2G4Q9UQ80 394 aaKnown RBP9.45□□□□□ -0.9
NIPBL-201ENST00000282516 GJA3Q9Y6H8 435 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 ZC3H12BQ5HYM0 836 aaKnown RBP9.45□□□□□ -0.9
NIPBL-201ENST00000282516 PTPN22Q9Y2R2 807 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 KIF22Q14807 665 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 COL4A3BPQ9Y5P4 624 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 EXOC1LA0A1B0GW35 172 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 PRR23D1E9PI22 279 aaPredicted RBP9.45□□□□□ -0.9
NIPBL-201ENST00000282516 ZNF263O14978 683 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 PRR23D2P0DMB1 279 aaPredicted RBP9.45□□□□□ -0.9
NIPBL-201ENST00000282516 ADKP55263 362 aaKnown RBP9.45□□□□□ -0.9
NIPBL-201ENST00000282516 ZNF445P59923 1031 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 PLEKHM2Q8IWE5 1019 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 TEX9Q8N6V9 391 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 DNAAF3Q8N9W5 541 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 NAF1Q96HR8 494 aaKnown RBP9.45□□□□□ -0.9
NIPBL-201ENST00000282516 GPAA1O43292 621 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 APOA1P02647 267 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 MT-ND3P03897 115 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 OPTNQ96CV9 577 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 SYTL2Q9HCH5 934 aa9.45□□□□□ -0.9
NIPBL-201ENST00000282516 H2AFZP0C0S5 128 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms