RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ZNF233A6NK53 670 aa20.95■□□□□ 0.94
UPF1-201ENST00000262803 RNF40O75150 1001 aa20.95■□□□□ 0.94
UPF1-201ENST00000262803 LONRF2Q1L5Z9 754 aa20.95■□□□□ 0.94
UPF1-201ENST00000262803 SYMPKQ92797 1274 aaKnown RBP20.95■□□□□ 0.94
UPF1-201ENST00000262803 GPKOWQ92917 476 aaPredicted RBP eCLIP20.95■□□□□ 0.94
UPF1-201ENST00000262803 PANK4Q9NVE7 773 aa20.95■□□□□ 0.94
UPF1-201ENST00000262803 ZNF804BA4D1E1 1349 aa20.95■□□□□ 0.94
UPF1-201ENST00000262803 GARSP41250 739 aaKnown RBP20.95■□□□□ 0.94
UPF1-201ENST00000262803 HYOU1Q9Y4L1 999 aa20.95■□□□□ 0.94
UPF1-201ENST00000262803 ATP8B3O60423 1300 aa20.95■□□□□ 0.94
UPF1-201ENST00000262803 PLEKHG1Q9ULL1 1385 aa20.95■□□□□ 0.94
UPF1-201ENST00000262803 PPEF1O14829 653 aaPredicted RBP20.95■□□□□ 0.94
UPF1-201ENST00000262803 PRR16Q569H4 304 aa20.95■□□□□ 0.94
UPF1-201ENST00000262803 RDH13Q8NBN7 331 aa20.95■□□□□ 0.94
UPF1-201ENST00000262803 EPSTI1Q96J88 318 aa20.95■□□□□ 0.94
UPF1-201ENST00000262803 CLASP1Q7Z460 1538 aa20.95■□□□□ 0.94
UPF1-201ENST00000262803 WDR11Q9BZH6 1224 aa20.94■□□□□ 0.94
UPF1-201ENST00000262803 ATG3Q9NT62 314 aa20.94■□□□□ 0.94
UPF1-201ENST00000262803 MYO1AQ9UBC5 1043 aa20.94■□□□□ 0.94
UPF1-201ENST00000262803 CARMIL3Q8ND23 1372 aa20.94■□□□□ 0.94
UPF1-201ENST00000262803 RPN1P04843 607 aaKnown RBP20.94■□□□□ 0.94
UPF1-201ENST00000262803 PRPSAP1Q14558 356 aa20.94■□□□□ 0.94
UPF1-201ENST00000262803 APOA5Q6Q788 366 aa20.94■□□□□ 0.94
UPF1-201ENST00000262803 VSIG1Q86XK7 387 aa20.94■□□□□ 0.94
UPF1-201ENST00000262803 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.94■□□□□ 0.94
UPF1-201ENST00000262803 RPS6KC1Q96S38 1066 aa20.94■□□□□ 0.94
UPF1-201ENST00000262803 MYL1P05976 194 aa20.94■□□□□ 0.94
UPF1-201ENST00000262803 POLGP54098 1239 aaPredicted RBP20.94■□□□□ 0.94
UPF1-201ENST00000262803 U2AF1L4Q8WU68 220 aaKnown RBP20.94■□□□□ 0.94
UPF1-201ENST00000262803 PRKG1Q13976 671 aa20.94■□□□□ 0.94
UPF1-201ENST00000262803 PALM2Q8IXS6 379 aa20.94■□□□□ 0.94
UPF1-201ENST00000262803 WDR70Q9NW82 654 aa20.94■□□□□ 0.94
UPF1-201ENST00000262803 STK17AQ9UEE5 414 aa20.94■□□□□ 0.94
UPF1-201ENST00000262803 METP08581 1390 aa20.93■□□□□ 0.94
UPF1-201ENST00000262803 CHRNDQ07001 517 aa20.93■□□□□ 0.94
UPF1-201ENST00000262803 DHX36Q9H2U1 1008 aaKnown RBP20.93■□□□□ 0.94
UPF1-201ENST00000262803 PHLPP2Q6ZVD8 1323 aa20.93■□□□□ 0.94
UPF1-201ENST00000262803 AP5M1Q9H0R1 490 aa20.93■□□□□ 0.94
UPF1-201ENST00000262803 VPS37BQ9H9H4 285 aa20.93■□□□□ 0.94
UPF1-201ENST00000262803 POLR3EQ9NVU0 708 aa20.93■□□□□ 0.94
UPF1-201ENST00000262803 CCPG1Q9ULG6 757 aa20.93■□□□□ 0.94
UPF1-201ENST00000262803 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.93■□□□□ 0.948e-7■■□□□ 11.7
UPF1-201ENST00000262803 GOLGA8HP0CJ92 632 aa20.93■□□□□ 0.94
UPF1-201ENST00000262803 IRX5P78411 483 aaPredicted RBP20.93■□□□□ 0.94
UPF1-201ENST00000262803 ANKRD20A3Q5VUR7 823 aa20.93■□□□□ 0.94
UPF1-201ENST00000262803 FAM8A1Q9UBU6 413 aa20.93■□□□□ 0.94
UPF1-201ENST00000262803 ATP7BP35670 1465 aa20.93■□□□□ 0.94
UPF1-201ENST00000262803 SRGAP2BP0DMP2 458 aa20.93■□□□□ 0.94
UPF1-201ENST00000262803 ODR4Q5SWX8 454 aa20.93■□□□□ 0.94
UPF1-201ENST00000262803 CCDC68Q9H2F9 335 aa20.93■□□□□ 0.94
UPF1-201ENST00000262803 TTC37Q6PGP7 1564 aa20.93■□□□□ 0.94
UPF1-201ENST00000262803 F8W8V4 182 aa20.92■□□□□ 0.94
UPF1-201ENST00000262803 LMNB1P20700 586 aa20.92■□□□□ 0.94
UPF1-201ENST00000262803 ARMCX5Q6P1M9 558 aa20.92■□□□□ 0.94
UPF1-201ENST00000262803 ARMC9Q7Z3E5 817 aa20.92■□□□□ 0.94
UPF1-201ENST00000262803 METTL23Q86XA0 190 aa20.92■□□□□ 0.94
UPF1-201ENST00000262803 NACC1Q96RE7 527 aa20.92■□□□□ 0.94
UPF1-201ENST00000262803 KRT12Q99456 494 aa20.92■□□□□ 0.94
UPF1-201ENST00000262803 HOMER3Q9NSC5 361 aa20.92■□□□□ 0.94
UPF1-201ENST00000262803 PPP6R2O75170 966 aa20.92■□□□□ 0.94
UPF1-201ENST00000262803 RNF8O76064 485 aa20.92■□□□□ 0.94
UPF1-201ENST00000262803 TCP1P17987 556 aaKnown RBP20.92■□□□□ 0.94
UPF1-201ENST00000262803 APBA1Q02410 837 aa20.92■□□□□ 0.94
UPF1-201ENST00000262803 DPCR1Q3MIW9 517 aa20.92■□□□□ 0.94
UPF1-201ENST00000262803 NCAPG2Q86XI2 1143 aa20.92■□□□□ 0.94
UPF1-201ENST00000262803 HGSO14964 777 aaPredicted RBP20.92■□□□□ 0.94
UPF1-201ENST00000262803 FNBP4Q8N3X1 1017 aaPredicted RBP20.92■□□□□ 0.94
UPF1-201ENST00000262803 ECM2O94769 699 aaPredicted RBP20.91■□□□□ 0.94
UPF1-201ENST00000262803 MFAP3P55082 362 aa20.91■□□□□ 0.94
UPF1-201ENST00000262803 EPN1Q9Y6I3 576 aaPredicted RBP20.91■□□□□ 0.94
UPF1-201ENST00000262803 FRMPD2Q68DX3 1309 aaPredicted RBP20.91■□□□□ 0.94
UPF1-201ENST00000262803 CDC25BP30305 580 aa20.91■□□□□ 0.94
UPF1-201ENST00000262803 CYP2J2P51589 502 aa20.91■□□□□ 0.94
UPF1-201ENST00000262803 GUCY2FP51841 1108 aa20.91■□□□□ 0.94
UPF1-201ENST00000262803 RPAP1Q9BWH6 1393 aaPredicted RBP20.91■□□□□ 0.94
UPF1-201ENST00000262803 MIS18BP1Q6P0N0 1132 aa20.91■□□□□ 0.94
UPF1-201ENST00000262803 ZNF449Q6P9G9 518 aa20.91■□□□□ 0.94
UPF1-201ENST00000262803 CDKL2Q92772 493 aa20.91■□□□□ 0.94
UPF1-201ENST00000262803 VCX3AQ9NNX9 186 aa20.91■□□□□ 0.94
UPF1-201ENST00000262803 SLC39A2Q9NP94 309 aa20.91■□□□□ 0.94
UPF1-201ENST00000262803 KCNK3O14649 394 aa20.91■□□□□ 0.94
UPF1-201ENST00000262803 TBC1D8O95759 1140 aa20.91■□□□□ 0.94
UPF1-201ENST00000262803 ABCB4P21439 1286 aa20.91■□□□□ 0.94
UPF1-201ENST00000262803 SURF1Q15526 300 aa20.91■□□□□ 0.94
UPF1-201ENST00000262803 CACTINQ8WUQ7 758 aaKnown RBP20.91■□□□□ 0.94
UPF1-201ENST00000262803 SATB1Q01826 763 aa20.91■□□□□ 0.94
UPF1-201ENST00000262803 ZSCAN26Q16670 478 aa20.91■□□□□ 0.94
UPF1-201ENST00000262803 FAM26FQ5R3K3 315 aa20.91■□□□□ 0.94
UPF1-201ENST00000262803 ARHGAP27Q6ZUM4 889 aa20.91■□□□□ 0.94
UPF1-201ENST00000262803 C11orf57Q6ZUT1 292 aaPredicted RBP20.91■□□□□ 0.94
UPF1-201ENST00000262803 GSDMAQ96QA5 445 aa20.91■□□□□ 0.94
UPF1-201ENST00000262803 ST7Q9NRC1 585 aa20.91■□□□□ 0.94
UPF1-201ENST00000262803 LOC102724428A0A0B4J2F2 783 aa20.9■□□□□ 0.94
UPF1-201ENST00000262803 SIK1P57059 783 aa20.9■□□□□ 0.94
UPF1-201ENST00000262803 SPATS2Q86XZ4 545 aaKnown RBP20.9■□□□□ 0.94
UPF1-201ENST00000262803 FOXP1Q9H334 677 aaPredicted RBP20.9■□□□□ 0.94
UPF1-201ENST00000262803 RCOR1Q9UKL0 485 aa20.9■□□□□ 0.94
UPF1-201ENST00000262803 KRT3P12035 628 aa20.9■□□□□ 0.94
UPF1-201ENST00000262803 COPB1P53618 953 aaKnown RBP20.9■□□□□ 0.94
UPF1-201ENST00000262803 SH3BGRP55822 239 aaPredicted RBP20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms