RNA–Protein interactions for RNA: ENST00000241393.3

CXCR4-201, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CXCR4, Length 1,682 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-201ENST00000241393 SYAP1Q96A49 352 aaPredicted RBP9.34□□□□□ -0.91
CXCR4-201ENST00000241393 CEP41Q9BYV8 373 aa9.34□□□□□ -0.91
CXCR4-201ENST00000241393 IL25Q9H293 177 aa9.34□□□□□ -0.91
CXCR4-201ENST00000241393 LIMCH1Q9UPQ0 1083 aa9.34□□□□□ -0.91
CXCR4-201ENST00000241393 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.34□□□□□ -0.91
CXCR4-201ENST00000241393 COL18A1P39060 1754 aa9.34□□□□□ -0.91
CXCR4-201ENST00000241393 LIG1P18858 919 aa9.33□□□□□ -0.92
CXCR4-201ENST00000241393 ID3Q02535 119 aa9.33□□□□□ -0.92
CXCR4-201ENST00000241393 G3BP1Q13283 466 aaKnown RBP eCLIP9.33□□□□□ -0.92
CXCR4-201ENST00000241393 WIPI1Q5MNZ9 446 aaPredicted RBP9.33□□□□□ -0.92
CXCR4-201ENST00000241393 IFNL2Q8IZJ0 200 aa9.33□□□□□ -0.92
CXCR4-201ENST00000241393 TMEM130Q8N3G9 435 aa9.33□□□□□ -0.92
CXCR4-201ENST00000241393 GPT2Q8TD30 523 aa9.33□□□□□ -0.92
CXCR4-201ENST00000241393 SUCLG2Q96I99 432 aa9.33□□□□□ -0.92
CXCR4-201ENST00000241393 ZSCAN31Q96LW9 406 aaPredicted RBP9.33□□□□□ -0.92
CXCR4-201ENST00000241393 FERD3LQ96RJ6 166 aa9.33□□□□□ -0.92
CXCR4-201ENST00000241393 UPF3BQ9BZI7 483 aaKnown RBP9.33□□□□□ -0.92
CXCR4-201ENST00000241393 ATXN3LQ9H3M9 355 aa9.33□□□□□ -0.92
CXCR4-201ENST00000241393 SUGCTQ9HAC7 445 aa9.33□□□□□ -0.92
CXCR4-201ENST00000241393 USP21Q9UK80 565 aa9.33□□□□□ -0.92
CXCR4-201ENST00000241393 CPDO75976 1380 aa9.33□□□□□ -0.92
CXCR4-201ENST00000241393 TM4SF5O14894 197 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 STK10O94804 968 aaKnown RBP9.32□□□□□ -0.92
CXCR4-201ENST00000241393 ATF3P18847 181 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 LRRFIP1Q32MZ4 808 aaKnown RBP9.32□□□□□ -0.92
CXCR4-201ENST00000241393 VPS53Q5VIR6 699 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 LRSAM1Q6UWE0 723 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 TICAM2Q86XR7 235 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 SMG8Q8ND04 991 aaKnown RBP9.32□□□□□ -0.92
CXCR4-201ENST00000241393 KAZALD1Q96I82 304 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 DCAF5Q96JK2 942 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 METTL22Q9BUU2 404 aaPredicted RBP9.32□□□□□ -0.92
CXCR4-201ENST00000241393 TMPRSS13Q9BYE2 586 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 GINM1Q9NU53 330 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 KCNK4Q9NYG8 393 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 RFX7Q2KHR2 1363 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 TNS3Q68CZ2 1445 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 PKD1L3Q7Z443 1732 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 PARP4Q9UKK3 1724 aaKnown RBP9.32□□□□□ -0.92
CXCR4-201ENST00000241393 ZNF862O60290 1169 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 IGKV5-2P06315 115 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 SNRPA1P09661 255 aaKnown RBP9.32□□□□□ -0.92
CXCR4-201ENST00000241393 NCLP19338 710 aaKnown RBP9.32□□□□□ -0.92
CXCR4-201ENST00000241393 GCKRQ14397 625 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 CWC27Q6UX04 472 aaKnown RBP9.32□□□□□ -0.92
CXCR4-201ENST00000241393 AACSQ86V21 672 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 OR6P1Q8NGX9 317 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 RGPD5Q99666 1765 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 WDR18Q9BV38 432 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 BICC1Q9H694 974 aaKnown RBP9.32□□□□□ -0.92
CXCR4-201ENST00000241393 ATP6V1DQ9Y5K8 247 aa9.32□□□□□ -0.92
CXCR4-201ENST00000241393 C5P01031 1676 aa9.31□□□□□ -0.92
CXCR4-201ENST00000241393 MEGF6O75095 1541 aa9.31□□□□□ -0.92
CXCR4-201ENST00000241393 CCDC171Q6TFL3 1326 aa9.31□□□□□ -0.92
CXCR4-201ENST00000241393 CNTNAP5Q8WYK1 1306 aa9.31□□□□□ -0.92
CXCR4-201ENST00000241393 SART1O43290 800 aaKnown RBP9.31□□□□□ -0.92
CXCR4-201ENST00000241393 SASH1O94885 1247 aa9.31□□□□□ -0.92
CXCR4-201ENST00000241393 MAP4K4O95819 1239 aaPredicted RBP9.31□□□□□ -0.92
CXCR4-201ENST00000241393 ZKSCAN1P17029 563 aaPredicted RBP9.31□□□□□ -0.92
CXCR4-201ENST00000241393 ERVK-24P63145 666 aa9.31□□□□□ -0.92
CXCR4-201ENST00000241393 NECTIN1Q15223 517 aa9.31□□□□□ -0.92
CXCR4-201ENST00000241393 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.31□□□□□ -0.92
CXCR4-201ENST00000241393 LRP10Q7Z4F1 713 aa9.31□□□□□ -0.92
CXCR4-201ENST00000241393 KCT2Q8NC54 265 aa9.31□□□□□ -0.92
CXCR4-201ENST00000241393 LENG1Q96BZ8 264 aaPredicted RBP9.31□□□□□ -0.92
CXCR4-201ENST00000241393 FMNL2Q96PY5 1086 aa9.31□□□□□ -0.92
CXCR4-201ENST00000241393 RPAP1Q9BWH6 1393 aaPredicted RBP9.3□□□□□ -0.92
CXCR4-201ENST00000241393 JCADQ9P266 1359 aa9.3□□□□□ -0.92
CXCR4-201ENST00000241393 PRAMEF22A3QJZ6 481 aa9.3□□□□□ -0.92
CXCR4-201ENST00000241393 ECEL1O95672 775 aa9.3□□□□□ -0.92
CXCR4-201ENST00000241393 FGRP09769 529 aa9.3□□□□□ -0.92
CXCR4-201ENST00000241393 PSMA5P28066 241 aa9.3□□□□□ -0.92
CXCR4-201ENST00000241393 GTF2F1P35269 517 aaKnown RBP eCLIP9.3□□□□□ -0.92
CXCR4-201ENST00000241393 AK2P54819 239 aa9.3□□□□□ -0.92
CXCR4-201ENST00000241393 RABL6Q3YEC7 729 aaPredicted RBP9.3□□□□□ -0.92
CXCR4-201ENST00000241393 RUFY3Q7L099 469 aa9.3□□□□□ -0.92
CXCR4-201ENST00000241393 MAP4K1Q92918 833 aa9.3□□□□□ -0.92
CXCR4-201ENST00000241393 EAF2Q96CJ1 260 aaPredicted RBP9.3□□□□□ -0.92
CXCR4-201ENST00000241393 PLPPR2Q96GM1 343 aa9.3□□□□□ -0.92
CXCR4-201ENST00000241393 PDLIM2Q96JY6 352 aa9.3□□□□□ -0.92
CXCR4-201ENST00000241393 YIPF2Q9BWQ6 316 aa9.3□□□□□ -0.92
CXCR4-201ENST00000241393 SRRTQ9BXP5 876 aaKnown RBP9.3□□□□□ -0.92
CXCR4-201ENST00000241393 ALDH8A1Q9H2A2 487 aaPredicted RBP9.3□□□□□ -0.92
CXCR4-201ENST00000241393 AKTIPQ9H8T0 292 aa9.3□□□□□ -0.92
CXCR4-201ENST00000241393 PA2G4Q9UQ80 394 aaKnown RBP9.3□□□□□ -0.92
CXCR4-201ENST00000241393 R3HCC1Q9Y3T6 440 aaKnown RBP9.3□□□□□ -0.92
CXCR4-201ENST00000241393 CYP46A1Q9Y6A2 500 aa9.3□□□□□ -0.92
CXCR4-201ENST00000241393 TMEM94Q12767 1356 aa9.3□□□□□ -0.92
CXCR4-201ENST00000241393 FAM229AH3BQW9 127 aa9.29□□□□□ -0.92
CXCR4-201ENST00000241393 ZSCAN22P10073 491 aaPredicted RBP9.29□□□□□ -0.92
CXCR4-201ENST00000241393 CRKP46108 304 aa9.29□□□□□ -0.92
CXCR4-201ENST00000241393 ZC3H12AQ5D1E8 599 aaKnown RBP9.29□□□□□ -0.92
CXCR4-201ENST00000241393 TTC5Q8N0Z6 440 aa9.29□□□□□ -0.92
CXCR4-201ENST00000241393 C12orf50Q8NA57 414 aaPredicted RBP9.29□□□□□ -0.92
CXCR4-201ENST00000241393 XAGE3Q8WTP9 111 aa9.29□□□□□ -0.92
CXCR4-201ENST00000241393 ZNF496Q96IT1 587 aaPredicted RBP9.29□□□□□ -0.92
CXCR4-201ENST00000241393 PIDD1Q9HB75 910 aa9.29□□□□□ -0.92
CXCR4-201ENST00000241393 BRMS1Q9HCU9 246 aa9.29□□□□□ -0.92
CXCR4-201ENST00000241393 HMG20BQ9P0W2 317 aa9.29□□□□□ -0.92
CXCR4-201ENST00000241393 AP4E1Q9UPM8 1137 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms