RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 PPP1R12CQ9BZL4 782 aa25.94■■□□□ 1.74
VTI1B-201ENST00000216456 KAT14Q9H8E8 782 aa25.94■■□□□ 1.74
VTI1B-201ENST00000216456 FPGSQ05932 587 aa25.93■■□□□ 1.74
VTI1B-201ENST00000216456 CDC37Q16543 378 aaPredicted RBP25.93■■□□□ 1.74
VTI1B-201ENST00000216456 IQSEC1Q6DN90 963 aa25.93■■□□□ 1.74
VTI1B-201ENST00000216456 ADGRF4Q8IZF3 695 aa25.93■■□□□ 1.74
VTI1B-201ENST00000216456 PPP1R13LQ8WUF5 828 aa25.93■■□□□ 1.74
VTI1B-201ENST00000216456 ANKS1AQ92625 1134 aa25.93■■□□□ 1.74
VTI1B-201ENST00000216456 AP5M1Q9H0R1 490 aa25.93■■□□□ 1.74
VTI1B-201ENST00000216456 VTA1Q9NP79 307 aa25.93■■□□□ 1.74
VTI1B-201ENST00000216456 GPATCH4Q5T3I0 446 aaKnown RBP25.92■■□□□ 1.74
VTI1B-201ENST00000216456 STAG2Q8N3U4 1231 aa25.92■■□□□ 1.74
VTI1B-201ENST00000216456 RNPC3Q96LT9 517 aaKnown RBP25.92■■□□□ 1.74
VTI1B-201ENST00000216456 VAT1LQ9HCJ6 419 aa25.92■■□□□ 1.74
VTI1B-201ENST00000216456 WDR19Q8NEZ3 1342 aa25.91■■□□□ 1.74
VTI1B-201ENST00000216456 TIMP1P01033 207 aa25.91■■□□□ 1.74
VTI1B-201ENST00000216456 CHMLP26374 656 aa25.91■■□□□ 1.74
VTI1B-201ENST00000216456 C16orf59Q7L2K0 433 aa25.91■■□□□ 1.74
VTI1B-201ENST00000216456 SLC17A8Q8NDX2 589 aa25.91■■□□□ 1.74
VTI1B-201ENST00000216456 COPS5Q92905 334 aa25.91■■□□□ 1.74
VTI1B-201ENST00000216456 WDR11Q9BZH6 1224 aa25.91■■□□□ 1.74
VTI1B-201ENST00000216456 ADD3Q9UEY8 706 aaKnown RBP25.91■■□□□ 1.74
VTI1B-201ENST00000216456 CTNNA3Q9UI47 895 aa25.91■■□□□ 1.74
VTI1B-201ENST00000216456 UMODL1Q5DID0 1318 aa25.9■■□□□ 1.74
VTI1B-201ENST00000216456 FAM109BQ6ICB4 259 aaPredicted RBP25.9■■□□□ 1.74
VTI1B-201ENST00000216456 SENP2Q9HC62 589 aa25.9■■□□□ 1.74
VTI1B-201ENST00000216456 COL20A1Q9P218 1284 aa25.9■■□□□ 1.74
VTI1B-201ENST00000216456 STXBP5LQ9Y2K9 1186 aa25.9■■□□□ 1.74
VTI1B-201ENST00000216456 A0A0C4DFX4 3053 aa25.89■■□□□ 1.74
VTI1B-201ENST00000216456 CD4P01730 458 aa25.89■■□□□ 1.74
VTI1B-201ENST00000216456 ACRP10323 421 aa25.89■■□□□ 1.74
VTI1B-201ENST00000216456 CSF2RAP15509 400 aa25.89■■□□□ 1.74
VTI1B-201ENST00000216456 CYP2C18P33260 490 aa25.89■■□□□ 1.74
VTI1B-201ENST00000216456 ITGA7Q13683 1181 aa25.89■■□□□ 1.74
VTI1B-201ENST00000216456 SEC23AQ15436 765 aa25.89■■□□□ 1.74
VTI1B-201ENST00000216456 QRICH1Q2TAL8 776 aa25.89■■□□□ 1.74
VTI1B-201ENST00000216456 DUSP28Q4G0W2 176 aa25.89■■□□□ 1.74
VTI1B-201ENST00000216456 SLC43A3Q8NBI5 491 aa25.89■■□□□ 1.74
VTI1B-201ENST00000216456 BUD13Q9BRD0 619 aaKnown RBP eCLIP25.89■■□□□ 1.745e-7■□□□□ 10.6
VTI1B-201ENST00000216456 KRT23Q9C075 422 aa25.89■■□□□ 1.74
VTI1B-201ENST00000216456 TRPV6Q9H1D0 765 aa25.89■■□□□ 1.74
VTI1B-201ENST00000216456 EYSQ5T1H1 3165 aa25.89■■□□□ 1.74
VTI1B-201ENST00000216456 CYP21A2P08686 494 aa25.88■■□□□ 1.73
VTI1B-201ENST00000216456 MFSD5Q6N075 450 aa25.88■■□□□ 1.73
VTI1B-201ENST00000216456 UBAC1Q9BSL1 405 aa25.88■■□□□ 1.73
VTI1B-201ENST00000216456 TTYH1Q9H313 450 aaPredicted RBP25.88■■□□□ 1.73
VTI1B-201ENST00000216456 JMJD4Q9H9V9 463 aa25.88■■□□□ 1.73
VTI1B-201ENST00000216456 CDH23Q9H251 3354 aa25.88■■□□□ 1.73
VTI1B-201ENST00000216456 MROH7Q68CQ1 1323 aa25.88■■□□□ 1.73
VTI1B-201ENST00000216456 RBM47A0AV96 593 aaKnown RBP25.87■■□□□ 1.73
VTI1B-201ENST00000216456 DHX16O60231 1041 aaKnown RBP25.87■■□□□ 1.73
VTI1B-201ENST00000216456 ARIH2O95376 493 aa25.87■■□□□ 1.73
VTI1B-201ENST00000216456 PARP1P09874 1014 aaKnown RBP25.87■■□□□ 1.73
VTI1B-201ENST00000216456 EDNRBP24530 442 aa25.87■■□□□ 1.73
VTI1B-201ENST00000216456 PDE4DQ08499 809 aa25.87■■□□□ 1.73
VTI1B-201ENST00000216456 SLC35G1Q2M3R5 365 aa25.87■■□□□ 1.73
VTI1B-201ENST00000216456 ASPRV1Q53RT3 343 aa25.87■■□□□ 1.73
VTI1B-201ENST00000216456 CCDC178Q5BJE1 867 aa25.87■■□□□ 1.73
VTI1B-201ENST00000216456 IFIT1BQ5T764 474 aaKnown RBP25.87■■□□□ 1.73
VTI1B-201ENST00000216456 ZNF697Q5TEC3 545 aa25.87■■□□□ 1.73
VTI1B-201ENST00000216456 TAAR1Q96RJ0 339 aa25.87■■□□□ 1.73
VTI1B-201ENST00000216456 RBAK-RBAKDNI3L0D1 243 aa25.86■■□□□ 1.73
VTI1B-201ENST00000216456 STOX1Q6ZVD7 989 aa25.86■■□□□ 1.73
VTI1B-201ENST00000216456 CHST3Q7LGC8 479 aa25.86■■□□□ 1.73
VTI1B-201ENST00000216456 SKAP1Q86WV1 359 aa25.86■■□□□ 1.73
VTI1B-201ENST00000216456 CNNM2Q9H8M5 875 aa25.86■■□□□ 1.73
VTI1B-201ENST00000216456 Q9Y3F1 56 aa25.86■■□□□ 1.73
VTI1B-201ENST00000216456 B4GALT4O60513 344 aa25.85■■□□□ 1.73
VTI1B-201ENST00000216456 PPP1R11O60927 126 aaPredicted RBP25.85■■□□□ 1.73
VTI1B-201ENST00000216456 MYL3P08590 195 aa25.85■■□□□ 1.73
VTI1B-201ENST00000216456 OR6J1Q8NGC5 347 aa25.85■■□□□ 1.73
VTI1B-201ENST00000216456 SYTL5Q8TDW5 730 aaPredicted RBP25.85■■□□□ 1.73
VTI1B-201ENST00000216456 SEMA6BQ9H3T3 888 aa25.85■■□□□ 1.73
VTI1B-201ENST00000216456 GRXCR1A8MXD5 290 aa25.84■■□□□ 1.73
VTI1B-201ENST00000216456 TLR3O15455 904 aaKnown RBP25.84■■□□□ 1.73
VTI1B-201ENST00000216456 SMAD3P84022 425 aaKnown RBP25.84■■□□□ 1.73
VTI1B-201ENST00000216456 TMEM240Q5SV17 173 aa25.84■■□□□ 1.73
VTI1B-201ENST00000216456 CDX2Q99626 313 aaPredicted RBP25.84■■□□□ 1.73
VTI1B-201ENST00000216456 MAD2L2Q9UI95 211 aa25.84■■□□□ 1.73
VTI1B-201ENST00000216456 RAD50Q92878 1312 aa25.84■■□□□ 1.73
VTI1B-201ENST00000216456 OPLAHO14841 1288 aa25.83■■□□□ 1.73
VTI1B-201ENST00000216456 ZEB2O60315 1214 aa25.83■■□□□ 1.73
VTI1B-201ENST00000216456 CABYRO75952 493 aa25.83■■□□□ 1.73
VTI1B-201ENST00000216456 CCL23P55773 120 aa25.83■■□□□ 1.73
VTI1B-201ENST00000216456 PURAQ00577 322 aaKnown RBP25.83■■□□□ 1.73
VTI1B-201ENST00000216456 FBXO11Q86XK2 927 aa25.83■■□□□ 1.73
VTI1B-201ENST00000216456 DNERQ8NFT8 737 aa25.83■■□□□ 1.73
VTI1B-201ENST00000216456 TRMT13Q9NUP7 481 aaKnown RBP25.83■■□□□ 1.73
VTI1B-201ENST00000216456 PNMA2Q9UL42 364 aa25.83■■□□□ 1.73
VTI1B-201ENST00000216456 ABCB11O95342 1321 aa25.83■■□□□ 1.73
VTI1B-201ENST00000216456 SGSM2O43147 1006 aa25.82■■□□□ 1.72
VTI1B-201ENST00000216456 COL9A3Q14050 684 aaPredicted RBP25.82■■□□□ 1.72
VTI1B-201ENST00000216456 PPP2R5BQ15173 497 aa25.82■■□□□ 1.72
VTI1B-201ENST00000216456 ZNF365Q70YC5 407 aa25.82■■□□□ 1.72
VTI1B-201ENST00000216456 HIPK3Q9H422 1215 aa25.82■■□□□ 1.72
VTI1B-201ENST00000216456 UNC80Q8N2C7 3258 aa25.82■■□□□ 1.72
VTI1B-201ENST00000216456 LOC102724159A0A0B4J2E5 919 aa25.81■■□□□ 1.72
VTI1B-201ENST00000216456 KLRF2D3W0D1 207 aa25.81■■□□□ 1.72
VTI1B-201ENST00000216456 TXNP10599 105 aaKnown RBP25.81■■□□□ 1.72
VTI1B-201ENST00000216456 NT5C2P49902 561 aa25.81■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms