RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 OPLAHO14841 1288 aa21.02■□□□□ 0.96
CLN3-254ENST00000637050 UBE2SQ16763 222 aa21.02■□□□□ 0.96
CLN3-254ENST00000637050 SAMD1Q6SPF0 538 aaPredicted RBP21.02■□□□□ 0.96
CLN3-254ENST00000637050 CCAR1Q8IX12 1150 aaKnown RBP21.02■□□□□ 0.96
CLN3-254ENST00000637050 SYAP1Q96A49 352 aaPredicted RBP21.02■□□□□ 0.96
CLN3-254ENST00000637050 SLC38A10Q9HBR0 1119 aa21.02■□□□□ 0.96
CLN3-254ENST00000637050 ZNF536O15090 1300 aa21.02■□□□□ 0.96
CLN3-254ENST00000637050 UNCXA6NJT0 531 aa21.02■□□□□ 0.95
CLN3-254ENST00000637050 MEIS2O14770 477 aa21.02■□□□□ 0.95
CLN3-254ENST00000637050 ICAM1P05362 532 aa21.02■□□□□ 0.95
CLN3-254ENST00000637050 FDX1P10109 184 aa21.02■□□□□ 0.95
CLN3-254ENST00000637050 PTPREP23469 700 aa21.02■□□□□ 0.95
CLN3-254ENST00000637050 FMR1Q06787 632 aaKnown RBP eCLIP21.02■□□□□ 0.95
CLN3-254ENST00000637050 KRI1Q8N9T8 703 aaKnown RBP21.02■□□□□ 0.95
CLN3-254ENST00000637050 FBXO2Q9UK22 296 aaPredicted RBP21.02■□□□□ 0.95
CLN3-254ENST00000637050 PTPRFP10586 1907 aa21.01■□□□□ 0.95
CLN3-254ENST00000637050 CUTAO60888 179 aa21.01■□□□□ 0.95
CLN3-254ENST00000637050 TAL1P17542 331 aaPredicted RBP21.01■□□□□ 0.95
CLN3-254ENST00000637050 ATP2C1P98194 919 aaPredicted RBP21.01■□□□□ 0.95
CLN3-254ENST00000637050 MCTP2Q6DN12 878 aa21.01■□□□□ 0.95
CLN3-254ENST00000637050 CATSPERGQ6ZRH7 1159 aa21.01■□□□□ 0.95
CLN3-254ENST00000637050 NEK8Q86SG6 692 aa21.01■□□□□ 0.95
CLN3-254ENST00000637050 TBCKQ8TEA7 893 aa21.01■□□□□ 0.95
CLN3-254ENST00000637050 OTUD5Q96G74 571 aa21.01■□□□□ 0.95
CLN3-254ENST00000637050 GOLPH3LQ9H4A5 285 aa21.01■□□□□ 0.95
CLN3-254ENST00000637050 SRPRBQ9Y5M8 271 aaKnown RBP21.01■□□□□ 0.95
CLN3-254ENST00000637050 ABCB11O95342 1321 aa21.01■□□□□ 0.95
CLN3-254ENST00000637050 RLFQ13129 1914 aa21■□□□□ 0.95
CLN3-254ENST00000637050 USP17L15C9J2P7 530 aa21■□□□□ 0.95
CLN3-254ENST00000637050 USP17L13C9JLJ4 530 aa21■□□□□ 0.95
CLN3-254ENST00000637050 USP17L11C9JVI0 530 aa21■□□□□ 0.95
CLN3-254ENST00000637050 USP17L18D6R9N7 530 aa21■□□□□ 0.95
CLN3-254ENST00000637050 USP17L22D6RA61 530 aa21■□□□□ 0.95
CLN3-254ENST00000637050 USP17L17D6RBQ6 530 aa21■□□□□ 0.95
CLN3-254ENST00000637050 USP17L19D6RCP7 530 aa21■□□□□ 0.95
CLN3-254ENST00000637050 USP17L20D6RJB6 530 aa21■□□□□ 0.95
CLN3-254ENST00000637050 CXCL11O14625 94 aa21■□□□□ 0.95
CLN3-254ENST00000637050 IRF6O14896 467 aa21■□□□□ 0.95
CLN3-254ENST00000637050 CMA1P23946 247 aa21■□□□□ 0.95
CLN3-254ENST00000637050 MCM7P33993 719 aa21■□□□□ 0.95
CLN3-254ENST00000637050 USP17L24Q0WX57 530 aa21■□□□□ 0.95
CLN3-254ENST00000637050 PPIL2Q13356 520 aa21■□□□□ 0.95
CLN3-254ENST00000637050 USP17L6PQ6QN14 398 aa21■□□□□ 0.95
CLN3-254ENST00000637050 MRPS27Q92552 414 aaKnown RBP21■□□□□ 0.95
CLN3-254ENST00000637050 ZBTB4Q9P1Z0 1013 aaPredicted RBP21■□□□□ 0.95
CLN3-254ENST00000637050 ADAMTS5Q9UNA0 930 aa21■□□□□ 0.95
CLN3-254ENST00000637050 KCNH4Q9UQ05 1017 aa21■□□□□ 0.95
CLN3-254ENST00000637050 MRPL11Q9Y3B7 192 aaKnown RBP21■□□□□ 0.95
CLN3-254ENST00000637050 A0A0G2JLL6 359 aaPredicted RBP20.99■□□□□ 0.95
CLN3-254ENST00000637050 PIK3CDO00329 1044 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 VWA5AO00534 786 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 FKBP1BP68106 108 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 PTGDRQ13258 359 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 AP3B2Q13367 1082 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 COG2Q14746 738 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 ZSCAN23Q3MJ62 389 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 PRRT2Q7Z6L0 340 aaPredicted RBP20.99■□□□□ 0.95
CLN3-254ENST00000637050 C4orf32Q8N8J7 132 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 FSIP1Q8NA03 581 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 MRVI1Q9Y6F6 885 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 LOC285556D6RIA3 1793 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 DSG3P32926 999 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 CCDC183Q5T5S1 534 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 ZNF579Q8NAF0 562 aaKnown RBP20.99■□□□□ 0.95
CLN3-254ENST00000637050 ENGASEQ8NFI3 743 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 AGBL1Q96MI9 1066 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 CLIC6Q96NY7 704 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 ZNF408Q9H9D4 720 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 DACT1Q9NYF0 836 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 PNMA2Q9UL42 364 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 CCPG1Q9ULG6 757 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 MYPNQ86TC9 1320 aa20.99■□□□□ 0.95
CLN3-254ENST00000637050 EDIL3O43854 480 aa20.98■□□□□ 0.95
CLN3-254ENST00000637050 ZBED4O75132 1171 aa20.98■□□□□ 0.95
CLN3-254ENST00000637050 NR1I2O75469 434 aa20.98■□□□□ 0.95
CLN3-254ENST00000637050 FAM160A1Q05DH4 1040 aa20.98■□□□□ 0.95
CLN3-254ENST00000637050 ORC2Q13416 577 aaPredicted RBP20.98■□□□□ 0.95
CLN3-254ENST00000637050 SHC4Q6S5L8 630 aa20.98■□□□□ 0.95
CLN3-254ENST00000637050 CCDC73Q6ZRK6 1079 aa20.98■□□□□ 0.95
CLN3-254ENST00000637050 PROCA1Q8NCQ7 364 aaPredicted RBP20.98■□□□□ 0.95
CLN3-254ENST00000637050 ZNF526Q8TF50 670 aaPredicted RBP20.98■□□□□ 0.95
CLN3-254ENST00000637050 FERMT2Q96AC1 680 aa20.98■□□□□ 0.95
CLN3-254ENST00000637050 OPTNQ96CV9 577 aa20.98■□□□□ 0.95
CLN3-254ENST00000637050 ATG4CQ96DT6 458 aa20.98■□□□□ 0.95
CLN3-254ENST00000637050 DDX19AQ9NUU7 478 aaKnown RBP20.98■□□□□ 0.95
CLN3-254ENST00000637050 FAM237AA0A1B0GTK4 181 aa20.97■□□□□ 0.95
CLN3-254ENST00000637050 FOSP01100 380 aaPredicted RBP20.97■□□□□ 0.95
CLN3-254ENST00000637050 SNW1Q13573 536 aaKnown RBP20.97■□□□□ 0.95
CLN3-254ENST00000637050 LETM2Q2VYF4 491 aa20.97■□□□□ 0.95
CLN3-254ENST00000637050 RESP18Q5W5W9 173 aa20.97■□□□□ 0.95
CLN3-254ENST00000637050 ARL6IP4Q66PJ3 421 aaKnown RBP20.97■□□□□ 0.95
CLN3-254ENST00000637050 ANO3Q9BYT9 981 aa20.97■□□□□ 0.95
CLN3-254ENST00000637050 SMCHD1A6NHR9 2005 aa20.97■□□□□ 0.95
CLN3-254ENST00000637050 A0A1B0GVL5 298 aa20.96■□□□□ 0.95
CLN3-254ENST00000637050 GRIN1Q05586 938 aa20.96■□□□□ 0.95
CLN3-254ENST00000637050 TREML2Q5T2D2 321 aa20.96■□□□□ 0.95
CLN3-254ENST00000637050 REPS2Q8NFH8 660 aa20.96■□□□□ 0.95
CLN3-254ENST00000637050 P2RX7Q99572 595 aaKnown RBP20.96■□□□□ 0.95
CLN3-254ENST00000637050 GBA2Q9HCG7 927 aaPredicted RBP20.96■□□□□ 0.95
CLN3-254ENST00000637050 RAVER2Q9HCJ3 691 aaKnown RBP20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms