RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 TNIP1Q15025 636 aa11.93□□□□□ -0.5
VPS11-208ENST00000621676 ENOX2Q16206 610 aaKnown RBP11.93□□□□□ -0.5
VPS11-208ENST00000621676 KRBA2Q6ZNG9 492 aa11.93□□□□□ -0.5
VPS11-208ENST00000621676 SAMSN1Q9NSI8 373 aaKnown RBP11.93□□□□□ -0.5
VPS11-208ENST00000621676 SCN7AQ01118 1682 aa11.93□□□□□ -0.5
VPS11-208ENST00000621676 ADAMTSL1Q8N6G6 1762 aa11.93□□□□□ -0.5
VPS11-208ENST00000621676 TRIM49BA6NDI0 452 aa11.93□□□□□ -0.5
VPS11-208ENST00000621676 RGL2O15211 777 aa11.93□□□□□ -0.5
VPS11-208ENST00000621676 NEMFO60524 1076 aa11.93□□□□□ -0.5
VPS11-208ENST00000621676 PTPREP23469 700 aa11.93□□□□□ -0.5
VPS11-208ENST00000621676 NCAPH2Q6IBW4 605 aa11.93□□□□□ -0.5
VPS11-208ENST00000621676 TMEM179Q6ZVK1 233 aa11.93□□□□□ -0.5
VPS11-208ENST00000621676 WDR19Q8NEZ3 1342 aa11.93□□□□□ -0.5
VPS11-208ENST00000621676 POSTNQ15063 836 aa11.93□□□□□ -0.5
VPS11-208ENST00000621676 RRAGBQ5VZM2 374 aa11.93□□□□□ -0.5
VPS11-208ENST00000621676 FBXO11Q86XK2 927 aa11.93□□□□□ -0.5
VPS11-208ENST00000621676 FAM151AQ8WW52 585 aa11.93□□□□□ -0.5
VPS11-208ENST00000621676 SMARCE1Q969G3 411 aa11.93□□□□□ -0.5
VPS11-208ENST00000621676 ELP1O95163 1332 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 SPDYE3A6NKU9 549 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 BMP6P22004 513 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 STAT2P52630 851 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 KRT26Q7Z3Y9 468 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 PIGOQ8TEQ8 1089 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 TSC1Q92574 1164 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 DPF2Q92785 391 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 TMEM150BA6NC51 233 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 NFIBO00712 420 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 ZBTB5O15062 677 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 GNA11P29992 359 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 CALCRLQ16602 461 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 SPDYE2Q495Y8 402 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 NEK8Q86SG6 692 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 FBXL16Q8N461 479 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 GMLQ99445 158 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 PSMD1Q99460 953 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 ARHGEF10LQ9HCE6 1279 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 SLC39A2Q9NP94 309 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 RGL1Q9NZL6 768 aa11.92□□□□□ -0.5
VPS11-208ENST00000621676 SYDE2Q5VT97 1194 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 TMC6Q7Z403 805 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 GLIS3Q8NEA6 775 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 CCDC148Q8NFR7 591 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 HOOK2Q96ED9 719 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 ELP3Q9H9T3 547 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 MYH7P12883 1935 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 CUTAO60888 179 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 CAP2P40123 477 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 ASIC1P78348 528 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 MCM6Q14566 821 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 STX1AQ16623 288 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 NELFCDQ8IXH7 590 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 ZNF668Q96K58 619 aaPredicted RBP11.91□□□□□ -0.5
VPS11-208ENST00000621676 IDI2Q9BXS1 227 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 R3HDMLQ9H3Y0 253 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.91□□□□□ -0.5
VPS11-208ENST00000621676 ANO10Q9NW15 660 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 LRWD1Q9UFC0 647 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 SWAP70Q9UH65 585 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 CCPG1Q9ULG6 757 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.91□□□□□ -0.5
VPS11-208ENST00000621676 BCORQ6W2J9 1755 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 PDS5AQ29RF7 1337 aaKnown RBP11.91□□□□□ -0.5
VPS11-208ENST00000621676 KRT18P05783 430 aaKnown RBP11.91□□□□□ -0.5
VPS11-208ENST00000621676 PLCG1P19174 1290 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 GADL1Q6ZQY3 521 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 SNX29Q8TEQ0 813 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 IKZF4Q9H2S9 585 aa11.91□□□□□ -0.5
VPS11-208ENST00000621676 DDX25Q9UHL0 483 aaKnown RBP11.91□□□□□ -0.5
VPS11-208ENST00000621676 ANKRD31Q8N7Z5 1873 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 PNMA6FA0A0J9YX94 578 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 E9PMD0 336 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 MYCNP04198 464 aaPredicted RBP11.9□□□□□ -0.5
VPS11-208ENST00000621676 FCER1AP12319 257 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 CCDC144BQ3MJ40 725 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 LRRC15Q8TF66 581 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 ATG4CQ96DT6 458 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 CCDC17Q96LX7 622 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 VPS16Q9H269 839 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 MMRN2Q9H8L6 949 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 PICK1Q9NRD5 415 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 TCP11L1Q9NUJ3 509 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 CEP131Q9UPN4 1083 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 SRPRBQ9Y5M8 271 aaKnown RBP11.9□□□□□ -0.5
VPS11-208ENST00000621676 PDE4DIPQ5VU43 2346 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 LRP5O75197 1615 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 CLSTN1O94985 981 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 CCDC173Q0VFZ6 552 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 PABPC4Q13310 644 aaKnown RBP eCLIP11.9□□□□□ -0.51e-6■□□□□ 9.5
VPS11-208ENST00000621676 RESP18Q5W5W9 173 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 PAXIP1Q6ZW49 1069 aaPredicted RBP11.9□□□□□ -0.5
VPS11-208ENST00000621676 SULF1Q8IWU6 871 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 CUL5Q93034 780 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 FUCA2Q9BTY2 467 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 XPO4Q9C0E2 1151 aaKnown RBP11.9□□□□□ -0.5
VPS11-208ENST00000621676 CTNND2Q9UQB3 1225 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 DUOX1Q9NRD9 1551 aa11.9□□□□□ -0.5
VPS11-208ENST00000621676 TESPA1A2RU30 521 aaPredicted RBP11.89□□□□□ -0.51
VPS11-208ENST00000621676 PCP11498 1178 aaKnown RBP11.89□□□□□ -0.51
VPS11-208ENST00000621676 IBSPP21815 317 aaPredicted RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms