RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 ZBTB5O15062 677 aa11.63□□□□□ -0.55
UPF1-213ENST00000601981 CNMDO75829 334 aa11.63□□□□□ -0.55
UPF1-213ENST00000601981 CDKL5O76039 1030 aa11.63□□□□□ -0.55
UPF1-213ENST00000601981 ZSCAN22P10073 491 aaPredicted RBP11.63□□□□□ -0.55
UPF1-213ENST00000601981 AKAP17AQ02040 695 aaKnown RBP11.63□□□□□ -0.55
UPF1-213ENST00000601981 TMTC3Q6ZXV5 915 aa11.63□□□□□ -0.55
UPF1-213ENST00000601981 PLEKHH3Q7Z736 793 aa11.63□□□□□ -0.55
UPF1-213ENST00000601981 RAB11FIP4Q86YS3 637 aa11.63□□□□□ -0.55
UPF1-213ENST00000601981 CHST13Q8NET6 341 aa11.63□□□□□ -0.55
UPF1-213ENST00000601981 REPS2Q8NFH8 660 aa11.63□□□□□ -0.55
UPF1-213ENST00000601981 SOCS4Q8WXH5 440 aa11.63□□□□□ -0.55
UPF1-213ENST00000601981 RIOX1Q9H6W3 641 aa11.63□□□□□ -0.55
UPF1-213ENST00000601981 RAVER2Q9HCJ3 691 aaKnown RBP11.63□□□□□ -0.55
UPF1-213ENST00000601981 SLC5A4Q9NY91 659 aa11.63□□□□□ -0.55
UPF1-213ENST00000601981 KIF3AQ9Y496 699 aa11.63□□□□□ -0.55
UPF1-213ENST00000601981 PNMA6FA0A0J9YX94 578 aa11.62□□□□□ -0.55
UPF1-213ENST00000601981 STRNO43815 780 aa11.62□□□□□ -0.55
UPF1-213ENST00000601981 FCER1AP12319 257 aa11.62□□□□□ -0.55
UPF1-213ENST00000601981 ALAS1P13196 640 aa11.62□□□□□ -0.55
UPF1-213ENST00000601981 ERCC3P19447 782 aa11.62□□□□□ -0.55
UPF1-213ENST00000601981 KCTD2Q14681 263 aa11.62□□□□□ -0.55
UPF1-213ENST00000601981 PKN2Q16513 984 aaKnown RBP11.62□□□□□ -0.55
UPF1-213ENST00000601981 QRICH1Q2TAL8 776 aa11.62□□□□□ -0.55
UPF1-213ENST00000601981 Q3C1V9 767 aa11.62□□□□□ -0.55
UPF1-213ENST00000601981 GPR142Q7Z601 462 aa11.62□□□□□ -0.55
UPF1-213ENST00000601981 CTU1Q7Z7A3 348 aaKnown RBP11.62□□□□□ -0.55
UPF1-213ENST00000601981 FBXO11Q86XK2 927 aa11.62□□□□□ -0.55
UPF1-213ENST00000601981 HOMER1Q86YM7 354 aa11.62□□□□□ -0.55
UPF1-213ENST00000601981 TRIM22Q8IYM9 498 aa11.62□□□□□ -0.55
UPF1-213ENST00000601981 NSUN7Q8NE18 718 aaKnown RBP11.62□□□□□ -0.55
UPF1-213ENST00000601981 NUDT12Q9BQG2 462 aa11.62□□□□□ -0.55
UPF1-213ENST00000601981 AMNQ9BXJ7 453 aa11.62□□□□□ -0.55
UPF1-213ENST00000601981 ACAD9Q9H845 621 aa11.62□□□□□ -0.55
UPF1-213ENST00000601981 JMJD4Q9H9V9 463 aa11.62□□□□□ -0.55
UPF1-213ENST00000601981 TRIM17Q9Y577 477 aa11.62□□□□□ -0.55
UPF1-213ENST00000601981 ABCB11O95342 1321 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 TNRC18O15417 2968 aaPredicted RBP11.61□□□□□ -0.55
UPF1-213ENST00000601981 SLC15A5A6NIM6 579 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 hCG_1984214I3L0E3 225 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 ECM2O94769 699 aaPredicted RBP11.61□□□□□ -0.55
UPF1-213ENST00000601981 PLEKHA8P1O95397 391 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 SLC34A2O95436 690 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 F13A1P00488 732 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 RGS19P49795 217 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 CCT2P78371 535 aaKnown RBP11.61□□□□□ -0.55
UPF1-213ENST00000601981 USH1GQ495M9 461 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 LARP1BQ659C4 914 aaKnown RBP11.61□□□□□ -0.55
UPF1-213ENST00000601981 ABRAQ8N0Z2 381 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 SRBD1Q8N5C6 995 aaKnown RBP11.61□□□□□ -0.55
UPF1-213ENST00000601981 ZNF713Q8N859 430 aaPredicted RBP11.61□□□□□ -0.55
UPF1-213ENST00000601981 TRIM47Q96LD4 638 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 AGBL1Q96MI9 1066 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 TRERF1Q96PN7 1200 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 PIGSQ96S52 555 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 MMP19Q99542 508 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 MAF1Q9H063 256 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 PORCNQ9H237 461 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 CPVLQ9H3G5 476 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 HOMER2Q9NSB8 354 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 RNF146Q9NTX7 359 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 HPS5Q9UPZ3 1129 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 MTMR6Q9Y217 621 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 MRPL11Q9Y3B7 192 aaKnown RBP11.61□□□□□ -0.55
UPF1-213ENST00000601981 ATP6V1DQ9Y5K8 247 aa11.61□□□□□ -0.55
UPF1-213ENST00000601981 PFASO15067 1338 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 ZNF536O15090 1300 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 PTPDC1A2A3K4 754 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 CCDC85CA6NKD9 419 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 JAK2O60674 1132 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 PEX10O60683 326 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 CTDNEP1O95476 244 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 RGS2P41220 211 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 SNAP25P60880 206 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 SKOR2Q2VWA4 1001 aaPredicted RBP11.6□□□□□ -0.55
UPF1-213ENST00000601981 POTEEQ6S8J3 1075 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 OTOP1Q7RTM1 612 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 MCF2L2Q86YR7 1114 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 ANKRD35Q8N283 1001 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 CCDC82Q8N4S0 544 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 RAET1EQ8TD07 263 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 MTMR8Q96EF0 704 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 DDX11Q96FC9 970 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 ARHGAP39Q9C0H5 1083 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 SRRDQ9UH36 339 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 PCDHA1Q9Y5I3 950 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 CNTNAP5Q8WYK1 1306 aa11.6□□□□□ -0.55
UPF1-213ENST00000601981 VPS37CA5D8V6 355 aaPredicted RBP11.59□□□□□ -0.55
UPF1-213ENST00000601981 CYTH3O43739 400 aa11.59□□□□□ -0.55
UPF1-213ENST00000601981 IFNAR1P17181 557 aa11.59□□□□□ -0.55
UPF1-213ENST00000601981 PTPREP23469 700 aa11.59□□□□□ -0.55
UPF1-213ENST00000601981 CDC27P30260 824 aa11.59□□□□□ -0.55
UPF1-213ENST00000601981 ADD1P35611 737 aaKnown RBP11.59□□□□□ -0.55
UPF1-213ENST00000601981 SSRP1Q08945 709 aaKnown RBP11.59□□□□□ -0.55
UPF1-213ENST00000601981 GRB14Q14449 540 aa11.59□□□□□ -0.55
UPF1-213ENST00000601981 FOXD4L5Q5VV16 416 aaPredicted RBP11.59□□□□□ -0.55
UPF1-213ENST00000601981 MCTP1Q6DN14 999 aa11.59□□□□□ -0.55
UPF1-213ENST00000601981 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.59□□□□□ -0.55
UPF1-213ENST00000601981 NBPF11Q86T75 865 aa11.59□□□□□ -0.55
UPF1-213ENST00000601981 DPP9Q86TI2 863 aa11.59□□□□□ -0.55
UPF1-213ENST00000601981 TRMT44Q8IYL2 757 aaKnown RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms