RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 NOL8Q76FK4 1167 aaKnown RBP14.83□□□□□ -0.04
TRIM28-212ENST00000597995 TRERF1Q96PN7 1200 aa14.83□□□□□ -0.04
TRIM28-212ENST00000597995 PBX4Q9BYU1 374 aa14.83□□□□□ -0.04
TRIM28-212ENST00000597995 PPP1R12CQ9BZL4 782 aa14.83□□□□□ -0.04
TRIM28-212ENST00000597995 IL23AQ9NPF7 189 aa14.83□□□□□ -0.04
TRIM28-212ENST00000597995 ISY1Q9ULR0 285 aaKnown RBP14.83□□□□□ -0.04
TRIM28-212ENST00000597995 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.83□□□□□ -0.04
TRIM28-212ENST00000597995 Q9Y3F1 56 aa14.83□□□□□ -0.04
TRIM28-212ENST00000597995 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.82□□□□□ -0.04
TRIM28-212ENST00000597995 ZEB2O60315 1214 aa14.82□□□□□ -0.04
TRIM28-212ENST00000597995 ALAS1P13196 640 aa14.82□□□□□ -0.04
TRIM28-212ENST00000597995 MX1P20591 662 aa14.82□□□□□ -0.04
TRIM28-212ENST00000597995 BEX3Q00994 111 aa14.82□□□□□ -0.04
TRIM28-212ENST00000597995 FSCN1Q16658 493 aaKnown RBP14.82□□□□□ -0.04
TRIM28-212ENST00000597995 CXCL17Q6UXB2 119 aa14.82□□□□□ -0.04
TRIM28-212ENST00000597995 TLK2Q86UE8 772 aa14.82□□□□□ -0.04
TRIM28-212ENST00000597995 EXOC6Q8TAG9 804 aa14.82□□□□□ -0.04
TRIM28-212ENST00000597995 HERVK_113Q902F9 699 aa14.82□□□□□ -0.04
TRIM28-212ENST00000597995 FSD1Q9BTV5 496 aa14.82□□□□□ -0.04
TRIM28-212ENST00000597995 AP5M1Q9H0R1 490 aa14.82□□□□□ -0.04
TRIM28-212ENST00000597995 STX8Q9UNK0 236 aa14.82□□□□□ -0.04
TRIM28-212ENST00000597995 ASTN1O14525 1302 aa14.82□□□□□ -0.04
TRIM28-212ENST00000597995 TTC28Q96AY4 2481 aa14.82□□□□□ -0.04
TRIM28-212ENST00000597995 MYO9BQ13459 2157 aa14.81□□□□□ -0.04
TRIM28-212ENST00000597995 TSPY2A6NKD2 308 aa14.81□□□□□ -0.04
TRIM28-212ENST00000597995 IGHDP01880 384 aa14.81□□□□□ -0.04
TRIM28-212ENST00000597995 ACRP10323 421 aa14.81□□□□□ -0.04
TRIM28-212ENST00000597995 SMPD1P17405 629 aa14.81□□□□□ -0.04
TRIM28-212ENST00000597995 CYP2C18P33260 490 aa14.81□□□□□ -0.04
TRIM28-212ENST00000597995 NOVP48745 357 aa14.81□□□□□ -0.04
TRIM28-212ENST00000597995 ITGA7Q13683 1181 aa14.81□□□□□ -0.04
TRIM28-212ENST00000597995 RAB30Q15771 203 aa14.81□□□□□ -0.04
TRIM28-212ENST00000597995 TJAP1Q5JTD0 557 aa14.81□□□□□ -0.04
TRIM28-212ENST00000597995 AKNAD1Q5T1N1 836 aa14.81□□□□□ -0.04
TRIM28-212ENST00000597995 GAS2L1Q99501 681 aaPredicted RBP14.81□□□□□ -0.04
TRIM28-212ENST00000597995 MTIF3Q9H2K0 278 aaKnown RBP14.81□□□□□ -0.04
TRIM28-212ENST00000597995 IL17RBQ9NRM6 502 aa14.81□□□□□ -0.04
TRIM28-212ENST00000597995 CYP39A1Q9NYL5 469 aa14.81□□□□□ -0.04
TRIM28-212ENST00000597995 PRR12Q9ULL5 1215 aa14.81□□□□□ -0.04
TRIM28-212ENST00000597995 GRXCR1A8MXD5 290 aa14.8□□□□□ -0.04
TRIM28-212ENST00000597995 DYNC1LI2O43237 492 aaPredicted RBP14.8□□□□□ -0.04
TRIM28-212ENST00000597995 FGBP02675 491 aa14.8□□□□□ -0.04
TRIM28-212ENST00000597995 PBX2P40425 430 aa14.8□□□□□ -0.04
TRIM28-212ENST00000597995 MUM1L1Q5H9M0 696 aa14.8□□□□□ -0.04
TRIM28-212ENST00000597995 TAPT1Q6NXT6 567 aa14.8□□□□□ -0.04
TRIM28-212ENST00000597995 KCTD1Q719H9 257 aa14.8□□□□□ -0.04
TRIM28-212ENST00000597995 USP38Q8NB14 1042 aa14.8□□□□□ -0.04
TRIM28-212ENST00000597995 MORC4Q8TE76 937 aa14.8□□□□□ -0.04
TRIM28-212ENST00000597995 HIPK3Q9H422 1215 aa14.8□□□□□ -0.04
TRIM28-212ENST00000597995 VTA1Q9NP79 307 aa14.8□□□□□ -0.04
TRIM28-212ENST00000597995 PRDM6Q9NQX0 595 aa14.8□□□□□ -0.04
TRIM28-212ENST00000597995 MSRAQ9UJ68 235 aa14.8□□□□□ -0.04
TRIM28-212ENST00000597995 ANAPC4Q9UJX5 808 aa14.8□□□□□ -0.04
TRIM28-212ENST00000597995 GRIN2DO15399 1336 aa14.8□□□□□ -0.04
TRIM28-212ENST00000597995 LOC102724159A0A0B4J2E5 919 aa14.79□□□□□ -0.04
TRIM28-212ENST00000597995 FOXP2O15409 715 aa14.79□□□□□ -0.04
TRIM28-212ENST00000597995 ICAM1P05362 532 aa14.79□□□□□ -0.04
TRIM28-212ENST00000597995 PDE1AP54750 535 aa14.79□□□□□ -0.04
TRIM28-212ENST00000597995 AAMPQ13685 434 aa14.79□□□□□ -0.04
TRIM28-212ENST00000597995 PWP2Q15269 919 aaKnown RBP14.79□□□□□ -0.04
TRIM28-212ENST00000597995 SMC5Q8IY18 1101 aa14.79□□□□□ -0.04
TRIM28-212ENST00000597995 PDGFCQ9NRA1 345 aa14.79□□□□□ -0.04
TRIM28-212ENST00000597995 SPTBN5Q9NRC6 3674 aaKnown RBP14.79□□□□□ -0.04
TRIM28-212ENST00000597995 CCPG1Q9ULG6 757 aa14.79□□□□□ -0.04
TRIM28-212ENST00000597995 ORC4O43929 436 aa14.78□□□□□ -0.04
TRIM28-212ENST00000597995 NMT2O60551 498 aa14.78□□□□□ -0.04
TRIM28-212ENST00000597995 FGRP09769 529 aa14.78□□□□□ -0.04
TRIM28-212ENST00000597995 SNAP25P60880 206 aa14.78□□□□□ -0.04
TRIM28-212ENST00000597995 CTDSPL2Q05D32 466 aa14.78□□□□□ -0.04
TRIM28-212ENST00000597995 BTNL9Q6UXG8 535 aa14.78□□□□□ -0.04
TRIM28-212ENST00000597995 RPUSD2Q8IZ73 545 aaKnown RBP14.78□□□□□ -0.04
TRIM28-212ENST00000597995 DCAF4Q8WV16 495 aa14.78□□□□□ -0.04
TRIM28-212ENST00000597995 ATXN2LQ8WWM7 1075 aaKnown RBP14.78□□□□□ -0.04
TRIM28-212ENST00000597995 NOC4LQ9BVI4 516 aaKnown RBP14.78□□□□□ -0.04
TRIM28-212ENST00000597995 RANBP17Q9H2T7 1088 aaKnown RBP14.78□□□□□ -0.04
TRIM28-212ENST00000597995 PRDM12Q9H4Q4 367 aa14.78□□□□□ -0.04
TRIM28-212ENST00000597995 CXXC1Q9P0U4 656 aaPredicted RBP14.78□□□□□ -0.04
TRIM28-212ENST00000597995 ADD3Q9UEY8 706 aaKnown RBP14.78□□□□□ -0.04
TRIM28-212ENST00000597995 SUPT16HQ9Y5B9 1047 aaKnown RBP14.78□□□□□ -0.04
TRIM28-212ENST00000597995 B4GALT4O60513 344 aa14.77□□□□□ -0.05
TRIM28-212ENST00000597995 RANBP6O60518 1105 aaKnown RBP14.77□□□□□ -0.05
TRIM28-212ENST00000597995 ALX1Q15699 326 aa14.77□□□□□ -0.05
TRIM28-212ENST00000597995 DUSP28Q4G0W2 176 aa14.77□□□□□ -0.05
TRIM28-212ENST00000597995 NSMFQ6X4W1 530 aa14.77□□□□□ -0.05
TRIM28-212ENST00000597995 KIAA1211Q6ZU35 1233 aa14.77□□□□□ -0.05
TRIM28-212ENST00000597995 EEPD1Q7L9B9 569 aa14.77□□□□□ -0.05
TRIM28-212ENST00000597995 FBXO16Q8IX29 292 aaPredicted RBP14.77□□□□□ -0.05
TRIM28-212ENST00000597995 CHMP4CQ96CF2 233 aa14.77□□□□□ -0.05
TRIM28-212ENST00000597995 LNPKQ9C0E8 428 aa14.77□□□□□ -0.05
TRIM28-212ENST00000597995 TRPV6Q9H1D0 765 aa14.77□□□□□ -0.05
TRIM28-212ENST00000597995 SLC28A3Q9HAS3 691 aa14.77□□□□□ -0.05
TRIM28-212ENST00000597995 INCENPQ9NQS7 918 aa14.77□□□□□ -0.05
TRIM28-212ENST00000597995 PNMA2Q9UL42 364 aa14.77□□□□□ -0.05
TRIM28-212ENST00000597995 UMODL1Q5DID0 1318 aa14.76□□□□□ -0.05
TRIM28-212ENST00000597995 LRRC37A2A6NM11 1700 aa14.76□□□□□ -0.05
TRIM28-212ENST00000597995 SUPT20HL2P0C7V6 817 aa14.76□□□□□ -0.05
TRIM28-212ENST00000597995 CCL23P55773 120 aa14.76□□□□□ -0.05
TRIM28-212ENST00000597995 BAATQ14032 418 aaPredicted RBP14.76□□□□□ -0.05
TRIM28-212ENST00000597995 CCDC96Q2M329 555 aa14.76□□□□□ -0.05
TRIM28-212ENST00000597995 B4GALNT3Q6L9W6 998 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms