RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 RASGRP4Q8TDF6 673 aa16.8■□□□□ 0.28
VRK3-212ENST00000596814 TNFRSF25Q93038 417 aa16.8■□□□□ 0.28
VRK3-212ENST00000596814 ASCC2Q9H1I8 757 aaPredicted RBP16.8■□□□□ 0.28
VRK3-212ENST00000596814 PSTPIP2Q9H939 334 aa16.8■□□□□ 0.28
VRK3-212ENST00000596814 RAVER2Q9HCJ3 691 aaKnown RBP16.8■□□□□ 0.28
VRK3-212ENST00000596814 OSBPP22059 807 aa16.79■□□□□ 0.28
VRK3-212ENST00000596814 MRPL12P52815 198 aaKnown RBP16.79■□□□□ 0.28
VRK3-212ENST00000596814 OAZ1P54368 228 aa16.79■□□□□ 0.28
VRK3-212ENST00000596814 BRI3BPQ8WY22 251 aa16.79■□□□□ 0.28
VRK3-212ENST00000596814 AGBL1Q96MI9 1066 aa16.79■□□□□ 0.28
VRK3-212ENST00000596814 ZNF396Q96N95 335 aaPredicted RBP16.79■□□□□ 0.28
VRK3-212ENST00000596814 PCDHA6Q9UN73 950 aa16.79■□□□□ 0.28
VRK3-212ENST00000596814 MRPL11Q9Y3B7 192 aaKnown RBP16.79■□□□□ 0.28
VRK3-212ENST00000596814 PCDHA8Q9Y5H6 950 aa16.79■□□□□ 0.28
VRK3-212ENST00000596814 SLC10A3P09131 477 aa16.79■□□□□ 0.28
VRK3-212ENST00000596814 ATL3Q6DD88 541 aa16.79■□□□□ 0.28
VRK3-212ENST00000596814 PNMA3Q9UL41 463 aa16.79■□□□□ 0.28
VRK3-212ENST00000596814 CCDC194A0A1B0GVG4 234 aa16.78■□□□□ 0.28
VRK3-212ENST00000596814 HERVK_113P62684 666 aa16.78■□□□□ 0.28
VRK3-212ENST00000596814 EARS2Q5JPH6 523 aaKnown RBP16.78■□□□□ 0.28
VRK3-212ENST00000596814 LBX2Q6XYB7 198 aa16.78■□□□□ 0.28
VRK3-212ENST00000596814 PIK3AP1Q6ZUJ8 805 aa16.78■□□□□ 0.28
VRK3-212ENST00000596814 KRT25Q7Z3Z0 450 aa16.78■□□□□ 0.28
VRK3-212ENST00000596814 MB21D1Q8N884 522 aa16.78■□□□□ 0.28
VRK3-212ENST00000596814 P2RX7Q99572 595 aaKnown RBP16.78■□□□□ 0.28
VRK3-212ENST00000596814 ZNF214Q9UL59 606 aaPredicted RBP16.78■□□□□ 0.28
VRK3-212ENST00000596814 CNPY2Q9Y2B0 182 aa16.78■□□□□ 0.28
VRK3-212ENST00000596814 SLC45A1Q9Y2W3 748 aa16.78■□□□□ 0.28
VRK3-212ENST00000596814 FAM205CA6NFA0 338 aa16.77■□□□□ 0.28
VRK3-212ENST00000596814 BTBD19C9JJ37 291 aa16.77■□□□□ 0.28
VRK3-212ENST00000596814 GOLGA6L22H0YM25 854 aa16.77■□□□□ 0.28
VRK3-212ENST00000596814 OPLAHO14841 1288 aa16.77■□□□□ 0.28
VRK3-212ENST00000596814 ATP2A1O14983 1001 aa16.77■□□□□ 0.28
VRK3-212ENST00000596814 FIBPO43427 364 aa16.77■□□□□ 0.28
VRK3-212ENST00000596814 ALAS1P13196 640 aa16.77■□□□□ 0.28
VRK3-212ENST00000596814 TMEM132BQ14DG7 1078 aa16.77■□□□□ 0.28
VRK3-212ENST00000596814 UBE2SQ16763 222 aa16.77■□□□□ 0.28
VRK3-212ENST00000596814 NOM1Q5C9Z4 860 aaKnown RBP16.77■□□□□ 0.28
VRK3-212ENST00000596814 RILPL1Q5EBL4 403 aa16.77■□□□□ 0.28
VRK3-212ENST00000596814 ANKRD23Q86SG2 305 aa16.77■□□□□ 0.28
VRK3-212ENST00000596814 HHIPL1Q96JK4 782 aa16.77■□□□□ 0.28
VRK3-212ENST00000596814 TEX13BQ9BXU2 312 aa16.77■□□□□ 0.28
VRK3-212ENST00000596814 BIN2Q9UBW5 565 aaPredicted RBP16.77■□□□□ 0.28
VRK3-212ENST00000596814 CFAP45Q9UL16 551 aa16.77■□□□□ 0.28
VRK3-212ENST00000596814 NOL7Q9UMY1 257 aaKnown RBP16.77■□□□□ 0.28
VRK3-212ENST00000596814 MANSC4A6NHS7 340 aaPredicted RBP16.76■□□□□ 0.27
VRK3-212ENST00000596814 CLK2P49760 499 aaKnown RBP16.76■□□□□ 0.27
VRK3-212ENST00000596814 JAKMIP3Q5VZ66 844 aa16.76■□□□□ 0.27
VRK3-212ENST00000596814 SNRNP48Q6IEG0 339 aaKnown RBP16.76■□□□□ 0.27
VRK3-212ENST00000596814 TEX2Q8IWB9 1127 aa16.76■□□□□ 0.27
VRK3-212ENST00000596814 CCDC102AQ96A19 550 aa16.76■□□□□ 0.27
VRK3-212ENST00000596814 USP28Q96RU2 1077 aa16.76■□□□□ 0.27
VRK3-212ENST00000596814 TMEM260Q9NX78 707 aa16.76■□□□□ 0.27
VRK3-212ENST00000596814 PDHXO00330 501 aa16.76■□□□□ 0.27
VRK3-212ENST00000596814 MCM4P33991 863 aa16.76■□□□□ 0.27
VRK3-212ENST00000596814 PLS1Q14651 629 aa16.76■□□□□ 0.27
VRK3-212ENST00000596814 USP17L6PQ6QN14 398 aa16.76■□□□□ 0.27
VRK3-212ENST00000596814 FTOQ9C0B1 505 aaKnown RBP eCLIP16.76■□□□□ 0.27
VRK3-212ENST00000596814 GDPD2Q9HCC8 539 aa16.76■□□□□ 0.27
VRK3-212ENST00000596814 HOMER2Q9NSB8 354 aa16.76■□□□□ 0.27
VRK3-212ENST00000596814 TFIP11Q9UBB9 837 aaKnown RBP16.76■□□□□ 0.27
VRK3-212ENST00000596814 TESPA1A2RU30 521 aaPredicted RBP16.75■□□□□ 0.27
VRK3-212ENST00000596814 DDX11L8A8MPP1 907 aa16.75■□□□□ 0.27
VRK3-212ENST00000596814 PIK3CDO00329 1044 aa16.75■□□□□ 0.27
VRK3-212ENST00000596814 MEIS2O14770 477 aa16.75■□□□□ 0.27
VRK3-212ENST00000596814 TRAPPC10P48553 1259 aa16.75■□□□□ 0.27
VRK3-212ENST00000596814 AP3B2Q13367 1082 aa16.75■□□□□ 0.27
VRK3-212ENST00000596814 NONOQ15233 471 aaKnown RBP eCLIP16.75■□□□□ 0.27
VRK3-212ENST00000596814 NFKBIBQ15653 356 aa16.75■□□□□ 0.27
VRK3-212ENST00000596814 CSPP1Q1MSJ5 1256 aa16.75■□□□□ 0.27
VRK3-212ENST00000596814 MCTP2Q6DN12 878 aa16.75■□□□□ 0.27
VRK3-212ENST00000596814 GTF3C2Q8WUA4 911 aaPredicted RBP16.75■□□□□ 0.27
VRK3-212ENST00000596814 CLEC4DQ8WXI8 215 aa16.75■□□□□ 0.27
VRK3-212ENST00000596814 TRERF1Q96PN7 1200 aa16.75■□□□□ 0.27
VRK3-212ENST00000596814 PAGR1Q9BTK6 254 aa16.75■□□□□ 0.27
VRK3-212ENST00000596814 SCAND2PQ9GZW5 306 aaPredicted RBP16.75■□□□□ 0.27
VRK3-212ENST00000596814 RNF146Q9NTX7 359 aa16.75■□□□□ 0.27
VRK3-212ENST00000596814 FAM155AB1AL88 458 aaPredicted RBP16.74■□□□□ 0.27
VRK3-212ENST00000596814 GCOM1H8Y6P7 765 aaPredicted RBP16.74■□□□□ 0.27
VRK3-212ENST00000596814 CFBP00751 764 aa16.74■□□□□ 0.27
VRK3-212ENST00000596814 POLR2MP0CAP2 368 aa16.74■□□□□ 0.27
VRK3-212ENST00000596814 STAT3P40763 770 aa16.74■□□□□ 0.27
VRK3-212ENST00000596814 TOB1P50616 345 aaPredicted RBP16.74■□□□□ 0.27
VRK3-212ENST00000596814 CEBPZQ03701 1054 aaKnown RBP16.74■□□□□ 0.27
VRK3-212ENST00000596814 INF2Q27J81 1249 aa16.74■□□□□ 0.27
VRK3-212ENST00000596814 TKFCQ3LXA3 575 aa16.74■□□□□ 0.27
VRK3-212ENST00000596814 POTEEQ6S8J3 1075 aa16.74■□□□□ 0.27
VRK3-212ENST00000596814 MCF2L2Q86YR7 1114 aa16.74■□□□□ 0.27
VRK3-212ENST00000596814 FAM43AQ8N2R8 423 aa16.74■□□□□ 0.27
VRK3-212ENST00000596814 PGBD1Q96JS3 809 aa16.74■□□□□ 0.27
VRK3-212ENST00000596814 POLR3EQ9NVU0 708 aa16.74■□□□□ 0.27
VRK3-212ENST00000596814 RTEL1Q9NZ71 1219 aa16.74■□□□□ 0.27
VRK3-212ENST00000596814 BTBD7Q9P203 1132 aa16.74■□□□□ 0.27
VRK3-212ENST00000596814 NFIBO00712 420 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 CYP2C8P10632 490 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 ATP2B1P20020 1258 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 NBR1Q14596 966 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 MUM1L1Q5H9M0 696 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 ANO1Q5XXA6 986 aa16.73■□□□□ 0.27
VRK3-212ENST00000596814 PAXIP1Q6ZW49 1069 aaPredicted RBP16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms