RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 RNPC3Q96LT9 517 aaKnown RBP14.75□□□□□ -0.05
UPF1-203ENST00000594504 GLT1D1Q96MS3 346 aa14.75□□□□□ -0.05
UPF1-203ENST00000594504 UPF3AQ9H1J1 476 aaKnown RBP14.75□□□□□ -0.05
UPF1-203ENST00000594504 PDGFCQ9NRA1 345 aa14.75□□□□□ -0.05
UPF1-203ENST00000594504 HELLSQ9NRZ9 838 aa14.75□□□□□ -0.05
UPF1-203ENST00000594504 TOMM22Q9NS69 142 aa14.75□□□□□ -0.05
UPF1-203ENST00000594504 ANAPC4Q9UJX5 808 aa14.75□□□□□ -0.05
UPF1-203ENST00000594504 A0A0D9SFI3 127 aa14.74□□□□□ -0.05
UPF1-203ENST00000594504 HIP1O00291 1037 aa14.74□□□□□ -0.05
UPF1-203ENST00000594504 FGAP02671 866 aa14.74□□□□□ -0.05
UPF1-203ENST00000594504 GSPT1P15170 499 aaKnown RBP14.74□□□□□ -0.05
UPF1-203ENST00000594504 SDSP20132 328 aa14.74□□□□□ -0.05
UPF1-203ENST00000594504 CST5P28325 142 aaPredicted RBP14.74□□□□□ -0.05
UPF1-203ENST00000594504 SMAD3P84022 425 aaKnown RBP14.74□□□□□ -0.05
UPF1-203ENST00000594504 TNFAIP2Q03169 654 aa14.74□□□□□ -0.05
UPF1-203ENST00000594504 NOL8Q76FK4 1167 aaKnown RBP14.74□□□□□ -0.05
UPF1-203ENST00000594504 PCSK9Q8NBP7 692 aaKnown RBP14.74□□□□□ -0.05
UPF1-203ENST00000594504 MYLIPQ8WY64 445 aa14.74□□□□□ -0.05
UPF1-203ENST00000594504 ELP1O95163 1332 aa14.73□□□□□ -0.05
UPF1-203ENST00000594504 FRMPD2Q68DX3 1309 aaPredicted RBP14.73□□□□□ -0.05
UPF1-203ENST00000594504 ARVCFO00192 962 aa14.73□□□□□ -0.05
UPF1-203ENST00000594504 PLA2G6O60733 806 aa14.73□□□□□ -0.05
UPF1-203ENST00000594504 TIMP1P01033 207 aa14.73□□□□□ -0.05
UPF1-203ENST00000594504 FGRP09769 529 aa14.73□□□□□ -0.05
UPF1-203ENST00000594504 NOVP48745 357 aa14.73□□□□□ -0.05
UPF1-203ENST00000594504 HAND2P61296 217 aa14.73□□□□□ -0.05
UPF1-203ENST00000594504 NMIQ13287 307 aaPredicted RBP14.73□□□□□ -0.05
UPF1-203ENST00000594504 ALX1Q15699 326 aa14.73□□□□□ -0.05
UPF1-203ENST00000594504 CCDC96Q2M329 555 aa14.73□□□□□ -0.05
UPF1-203ENST00000594504 TKFCQ3LXA3 575 aa14.73□□□□□ -0.05
UPF1-203ENST00000594504 MCMDC2Q4G0Z9 681 aa14.73□□□□□ -0.05
UPF1-203ENST00000594504 NSMFQ6X4W1 530 aa14.73□□□□□ -0.05
UPF1-203ENST00000594504 C16orf59Q7L2K0 433 aa14.73□□□□□ -0.05
UPF1-203ENST00000594504 ZNF589Q86UQ0 364 aaPredicted RBP14.73□□□□□ -0.05
UPF1-203ENST00000594504 TMEM47Q9BQJ4 181 aa14.73□□□□□ -0.05
UPF1-203ENST00000594504 PPP1R12CQ9BZL4 782 aa14.73□□□□□ -0.05
UPF1-203ENST00000594504 SPC25Q9HBM1 224 aa14.73□□□□□ -0.05
UPF1-203ENST00000594504 GPCPD1Q9NPB8 672 aa14.73□□□□□ -0.05
UPF1-203ENST00000594504 PPP4R2Q9NY27 417 aa14.73□□□□□ -0.05
UPF1-203ENST00000594504 TBX21Q9UL17 535 aa14.73□□□□□ -0.05
UPF1-203ENST00000594504 GNEQ9Y223 722 aaKnown RBP14.73□□□□□ -0.05
UPF1-203ENST00000594504 A0A0U1RQG5 324 aaPredicted RBP14.72□□□□□ -0.05
UPF1-203ENST00000594504 ASB14A6NK59 587 aa14.72□□□□□ -0.05
UPF1-203ENST00000594504 DYNC1LI2O43237 492 aaPredicted RBP14.72□□□□□ -0.05
UPF1-203ENST00000594504 ORC4O43929 436 aa14.72□□□□□ -0.05
UPF1-203ENST00000594504 ACRP10323 421 aa14.72□□□□□ -0.05
UPF1-203ENST00000594504 HSPD1P10809 573 aaKnown RBP14.72□□□□□ -0.05
UPF1-203ENST00000594504 SMPD1P17405 629 aa14.72□□□□□ -0.05
UPF1-203ENST00000594504 TAPT1Q6NXT6 567 aa14.72□□□□□ -0.05
UPF1-203ENST00000594504 CXCL17Q6UXB2 119 aa14.72□□□□□ -0.05
UPF1-203ENST00000594504 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.72□□□□□ -0.05
UPF1-203ENST00000594504 FBXO16Q8IX29 292 aaPredicted RBP14.72□□□□□ -0.05
UPF1-203ENST00000594504 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.72□□□□□ -0.056e-8■■□□□ 13.6
UPF1-203ENST00000594504 DIAPH3Q9NSV4 1193 aa14.72□□□□□ -0.05
UPF1-203ENST00000594504 CYP39A1Q9NYL5 469 aa14.72□□□□□ -0.05
UPF1-203ENST00000594504 CCPG1Q9ULG6 757 aa14.72□□□□□ -0.05
UPF1-203ENST00000594504 DNAH12Q6ZR08 3092 aa14.72□□□□□ -0.05
UPF1-203ENST00000594504 LCTP09848 1927 aa14.72□□□□□ -0.05
UPF1-203ENST00000594504 CSF2RAP15509 400 aa14.71□□□□□ -0.05
UPF1-203ENST00000594504 MFAP1P55081 439 aaKnown RBP14.71□□□□□ -0.05
UPF1-203ENST00000594504 PPP4R3BQ5MIZ7 849 aa14.71□□□□□ -0.05
UPF1-203ENST00000594504 MFSD5Q6N075 450 aa14.71□□□□□ -0.05
UPF1-203ENST00000594504 FAM126BQ8IXS8 530 aa14.71□□□□□ -0.05
UPF1-203ENST00000594504 DCAF4Q8WV16 495 aa14.71□□□□□ -0.05
UPF1-203ENST00000594504 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.7□□□□□ -0.06
UPF1-203ENST00000594504 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.7□□□□□ -0.06
UPF1-203ENST00000594504 GRXCR1A8MXD5 290 aa14.7□□□□□ -0.06
UPF1-203ENST00000594504 ICAM1P05362 532 aa14.7□□□□□ -0.06
UPF1-203ENST00000594504 CYP2C18P33260 490 aa14.7□□□□□ -0.06
UPF1-203ENST00000594504 PSMC6P62333 389 aa14.7□□□□□ -0.06
UPF1-203ENST00000594504 NKX3-2P78367 333 aa14.7□□□□□ -0.06
UPF1-203ENST00000594504 BAATQ14032 418 aaPredicted RBP14.7□□□□□ -0.06
UPF1-203ENST00000594504 TMEM240Q5SV17 173 aa14.7□□□□□ -0.06
UPF1-203ENST00000594504 SYDE2Q5VT97 1194 aa14.7□□□□□ -0.06
UPF1-203ENST00000594504 KIAA1211Q6ZU35 1233 aa14.7□□□□□ -0.06
UPF1-203ENST00000594504 TLK2Q86UE8 772 aa14.7□□□□□ -0.06
UPF1-203ENST00000594504 COL25A1Q9BXS0 654 aaPredicted RBP14.7□□□□□ -0.06
UPF1-203ENST00000594504 RANBP17Q9H2T7 1088 aaKnown RBP14.7□□□□□ -0.06
UPF1-203ENST00000594504 GRIN2DO15399 1336 aa14.69□□□□□ -0.06
UPF1-203ENST00000594504 MROH7Q68CQ1 1323 aa14.69□□□□□ -0.06
UPF1-203ENST00000594504 CCDC171Q6TFL3 1326 aa14.69□□□□□ -0.06
UPF1-203ENST00000594504 COL6A3P12111 3177 aa14.69□□□□□ -0.06
UPF1-203ENST00000594504 NFIBO00712 420 aa14.69□□□□□ -0.06
UPF1-203ENST00000594504 CD4P01730 458 aa14.69□□□□□ -0.06
UPF1-203ENST00000594504 TOP1P11387 765 aaKnown RBP14.69□□□□□ -0.06
UPF1-203ENST00000594504 GRIN2CQ14957 1233 aa14.69□□□□□ -0.06
UPF1-203ENST00000594504 IQSEC1Q6DN90 963 aa14.69□□□□□ -0.06
UPF1-203ENST00000594504 CWC27Q6UX04 472 aaKnown RBP14.69□□□□□ -0.06
UPF1-203ENST00000594504 BTNL9Q6UXG8 535 aa14.69□□□□□ -0.06
UPF1-203ENST00000594504 ZNF365Q70YC5 407 aa14.69□□□□□ -0.06
UPF1-203ENST00000594504 MAFAQ8NHW3 353 aaPredicted RBP14.69□□□□□ -0.06
UPF1-203ENST00000594504 ZKSCAN3Q9BRR0 538 aa14.69□□□□□ -0.06
UPF1-203ENST00000594504 AP5M1Q9H0R1 490 aa14.69□□□□□ -0.06
UPF1-203ENST00000594504 TCP11L1Q9NUJ3 509 aa14.69□□□□□ -0.06
UPF1-203ENST00000594504 LRRC37A2A6NM11 1700 aa14.69□□□□□ -0.06
UPF1-203ENST00000594504 UMODL1Q5DID0 1318 aa14.68□□□□□ -0.06
UPF1-203ENST00000594504 PTPDC1A2A3K4 754 aa14.68□□□□□ -0.06
UPF1-203ENST00000594504 TLR3O15455 904 aaKnown RBP14.68□□□□□ -0.06
UPF1-203ENST00000594504 PDHBP11177 359 aa14.68□□□□□ -0.06
UPF1-203ENST00000594504 PBX2P40425 430 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms