RNA–Protein interactions for RNA: ENST00000591534.5

BRCA1-226, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-226ENST00000591534 FERMT2Q96AC1 680 aa11.25□□□□□ -0.61
BRCA1-226ENST00000591534 SLF1Q9BQI6 1058 aa11.25□□□□□ -0.61
BRCA1-226ENST00000591534 TSEN34Q9BSV6 310 aaKnown RBP11.25□□□□□ -0.61
BRCA1-226ENST00000591534 SPC25Q9HBM1 224 aa11.25□□□□□ -0.61
BRCA1-226ENST00000591534 ECHDC1Q9NTX5 307 aa11.25□□□□□ -0.61
BRCA1-226ENST00000591534 FAM184BQ9ULE4 1060 aa11.25□□□□□ -0.61
BRCA1-226ENST00000591534 SYNPO2Q9UMS6 1093 aa11.25□□□□□ -0.61
BRCA1-226ENST00000591534 PCDHGC3Q9UN70 934 aa11.25□□□□□ -0.61
BRCA1-226ENST00000591534 SUPT16HQ9Y5B9 1047 aaKnown RBP11.25□□□□□ -0.61
BRCA1-226ENST00000591534 ALPK3Q96L96 1907 aa11.25□□□□□ -0.61
BRCA1-226ENST00000591534 ZNF236Q9UL36 1845 aa11.24□□□□□ -0.61
BRCA1-226ENST00000591534 DCDC2CA8MYV0 355 aa11.24□□□□□ -0.61
BRCA1-226ENST00000591534 PGK2P07205 417 aa11.24□□□□□ -0.61
BRCA1-226ENST00000591534 SLC3A2P08195 630 aaKnown RBP11.24□□□□□ -0.61
BRCA1-226ENST00000591534 CLTBP09497 229 aa11.24□□□□□ -0.61
BRCA1-226ENST00000591534 FDX1P10109 184 aa11.24□□□□□ -0.61
BRCA1-226ENST00000591534 RAG1P15918 1043 aa11.24□□□□□ -0.61
BRCA1-226ENST00000591534 TLE2Q04725 743 aa11.24□□□□□ -0.61
BRCA1-226ENST00000591534 SHHQ15465 462 aa11.24□□□□□ -0.61
BRCA1-226ENST00000591534 ZNF792Q3KQV3 632 aa11.24□□□□□ -0.61
BRCA1-226ENST00000591534 FAM47AQ5JRC9 791 aa11.24□□□□□ -0.61
BRCA1-226ENST00000591534 FAM83BQ5T0W9 1011 aa11.24□□□□□ -0.61
BRCA1-226ENST00000591534 CCDC174Q6PII3 467 aa11.24□□□□□ -0.61
BRCA1-226ENST00000591534 CLEC10AQ8IUN9 316 aa11.24□□□□□ -0.61
BRCA1-226ENST00000591534 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.24□□□□□ -0.61
BRCA1-226ENST00000591534 ZNF444Q8N0Y2 327 aaPredicted RBP11.24□□□□□ -0.61
BRCA1-226ENST00000591534 ZFRQ96KR1 1074 aaKnown RBP11.24□□□□□ -0.61
BRCA1-226ENST00000591534 NACAP1Q9BZK3 213 aa11.24□□□□□ -0.61
BRCA1-226ENST00000591534 PDLIM7Q9NR12 457 aa11.24□□□□□ -0.61
BRCA1-226ENST00000591534 NYAP2Q9P242 653 aa11.24□□□□□ -0.61
BRCA1-226ENST00000591534 FBXO40Q9UH90 709 aa11.24□□□□□ -0.61
BRCA1-226ENST00000591534 SYNGAP1Q96PV0 1343 aa11.24□□□□□ -0.61
BRCA1-226ENST00000591534 TMEM265A0A087WTH1 108 aa11.23□□□□□ -0.61
BRCA1-226ENST00000591534 CYP2D7A0A087X1C5 515 aa11.23□□□□□ -0.61
BRCA1-226ENST00000591534 MINDY4BA8MYZ0 360 aa11.23□□□□□ -0.61
BRCA1-226ENST00000591534 F5H6K3 240 aa11.23□□□□□ -0.61
BRCA1-226ENST00000591534 APPP05067 770 aa11.23□□□□□ -0.61
BRCA1-226ENST00000591534 TDO2P48775 406 aa11.23□□□□□ -0.61
BRCA1-226ENST00000591534 KLRC3Q07444 240 aa11.23□□□□□ -0.61
BRCA1-226ENST00000591534 TMEM259Q4ZIN3 620 aa11.23□□□□□ -0.61
BRCA1-226ENST00000591534 SNRNP48Q6IEG0 339 aaKnown RBP11.23□□□□□ -0.61
BRCA1-226ENST00000591534 LAPTM4BQ86VI4 370 aa11.23□□□□□ -0.61
BRCA1-226ENST00000591534 PCSK9Q8NBP7 692 aaKnown RBP11.23□□□□□ -0.61
BRCA1-226ENST00000591534 FAM161BQ96MY7 647 aa11.23□□□□□ -0.61
BRCA1-226ENST00000591534 TOX2Q96NM4 488 aa11.23□□□□□ -0.61
BRCA1-226ENST00000591534 STRBPQ96SI9 672 aaKnown RBP11.23□□□□□ -0.61
BRCA1-226ENST00000591534 PUS7LQ9H0K6 701 aaKnown RBP11.23□□□□□ -0.61
BRCA1-226ENST00000591534 STARD7Q9NQZ5 370 aa11.23□□□□□ -0.61
BRCA1-226ENST00000591534 TMEM39AQ9NV64 488 aa11.23□□□□□ -0.61
BRCA1-226ENST00000591534 FBXO28Q9NVF7 368 aa11.23□□□□□ -0.61
BRCA1-226ENST00000591534 ZNF214Q9UL59 606 aaPredicted RBP11.23□□□□□ -0.61
BRCA1-226ENST00000591534 MROH7Q68CQ1 1323 aa11.23□□□□□ -0.61
BRCA1-226ENST00000591534 ROBO3Q96MS0 1386 aa11.23□□□□□ -0.61
BRCA1-226ENST00000591534 A0A1W2PQ45 241 aaPredicted RBP11.22□□□□□ -0.61
BRCA1-226ENST00000591534 A0A1W2PQY0 241 aa11.22□□□□□ -0.61
BRCA1-226ENST00000591534 ATP2A1O14983 1001 aa11.22□□□□□ -0.61
BRCA1-226ENST00000591534 PQBP1O60828 265 aaKnown RBP11.22□□□□□ -0.61
BRCA1-226ENST00000591534 AP1G2O75843 785 aa11.22□□□□□ -0.61
BRCA1-226ENST00000591534 PGK1P00558 417 aa11.22□□□□□ -0.61
BRCA1-226ENST00000591534 OAZ1P54368 228 aa11.22□□□□□ -0.61
BRCA1-226ENST00000591534 RRP1P56182 461 aaKnown RBP11.22□□□□□ -0.61
BRCA1-226ENST00000591534 LSM11P83369 360 aaKnown RBP eCLIP11.22□□□□□ -0.61
BRCA1-226ENST00000591534 FPGSQ05932 587 aa11.22□□□□□ -0.61
BRCA1-226ENST00000591534 FUT2Q10981 343 aa11.22□□□□□ -0.61
BRCA1-226ENST00000591534 ADGRD1Q6QNK2 874 aa11.22□□□□□ -0.61
BRCA1-226ENST00000591534 ANKRD35Q8N283 1001 aa11.22□□□□□ -0.61
BRCA1-226ENST00000591534 KBTBD3Q8NAB2 608 aa11.22□□□□□ -0.61
BRCA1-226ENST00000591534 NAV1Q8NEY1 1877 aa11.22□□□□□ -0.61
BRCA1-226ENST00000591534 APPBP2Q92624 585 aa11.22□□□□□ -0.61
BRCA1-226ENST00000591534 RNPC3Q96LT9 517 aaKnown RBP11.22□□□□□ -0.61
BRCA1-226ENST00000591534 GLT1D1Q96MS3 346 aa11.22□□□□□ -0.61
BRCA1-226ENST00000591534 GUCD1Q96NT3 240 aa11.22□□□□□ -0.61
BRCA1-226ENST00000591534 ARID3AQ99856 593 aa11.22□□□□□ -0.61
BRCA1-226ENST00000591534 SEMA6BQ9H3T3 888 aa11.22□□□□□ -0.61
BRCA1-226ENST00000591534 CLIP2Q9UDT6 1046 aa11.22□□□□□ -0.61
BRCA1-226ENST00000591534 FEM1BQ9UK73 627 aa11.22□□□□□ -0.61
BRCA1-226ENST00000591534 TRIM43BA6NCK2 446 aa11.21□□□□□ -0.61
BRCA1-226ENST00000591534 A6NJR5 290 aa11.21□□□□□ -0.61
BRCA1-226ENST00000591534 TK2O00142 265 aa11.21□□□□□ -0.61
BRCA1-226ENST00000591534 KIAA0355O15063 1070 aa11.21□□□□□ -0.61
BRCA1-226ENST00000591534 RNF113AO15541 343 aaKnown RBP11.21□□□□□ -0.61
BRCA1-226ENST00000591534 SMARCA5O60264 1052 aaPredicted RBP11.21□□□□□ -0.61
BRCA1-226ENST00000591534 DUSP11O75319 330 aaKnown RBP11.21□□□□□ -0.61
BRCA1-226ENST00000591534 TTLL1O95922 423 aa11.21□□□□□ -0.61
BRCA1-226ENST00000591534 CFHP08603 1231 aa11.21□□□□□ -0.61
BRCA1-226ENST00000591534 ZNF865P0CJ78 1059 aaPredicted RBP11.21□□□□□ -0.61
BRCA1-226ENST00000591534 RASA1P20936 1047 aa11.21□□□□□ -0.61
BRCA1-226ENST00000591534 SLC4A3P48751 1232 aa11.21□□□□□ -0.61
BRCA1-226ENST00000591534 ACLYP53396 1101 aa11.21□□□□□ -0.61
BRCA1-226ENST00000591534 USP46P62068 366 aa11.21□□□□□ -0.61
BRCA1-226ENST00000591534 PDE4BQ07343 736 aa11.21□□□□□ -0.61
BRCA1-226ENST00000591534 SLFNL1Q499Z3 407 aa11.21□□□□□ -0.61
BRCA1-226ENST00000591534 MAMDC4Q6UXC1 1216 aa11.21□□□□□ -0.61
BRCA1-226ENST00000591534 ANKRD33Q7Z3H0 272 aa11.21□□□□□ -0.61
BRCA1-226ENST00000591534 BANK1Q8NDB2 785 aa11.21□□□□□ -0.61
BRCA1-226ENST00000591534 CHST13Q8NET6 341 aa11.21□□□□□ -0.61
BRCA1-226ENST00000591534 REPS2Q8NFH8 660 aa11.21□□□□□ -0.61
BRCA1-226ENST00000591534 MKL1Q969V6 931 aa11.21□□□□□ -0.61
BRCA1-226ENST00000591534 VTI1AQ96AJ9 217 aa11.21□□□□□ -0.61
BRCA1-226ENST00000591534 TRIM43Q96BQ3 446 aaPredicted RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms