RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 SLC51AQ86UW1 340 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 TTLL6Q8N841 843 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 OR8K1Q8NGG5 319 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 CTCFLQ8NI51 663 aaPredicted RBP12.16□□□□□ -0.46
VPS4B-206ENST00000591475 CCDC102AQ96A19 550 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 MTRQ99707 1265 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 HAUS4Q9H6D7 363 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 MED4Q9NPJ6 270 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 POLLQ9UGP5 575 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 C6orf229H3BNL8 230 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 PSMD14O00487 310 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 RPS6KA5O75582 802 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 FGRP09769 529 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 PARP1P09874 1014 aaKnown RBP12.16□□□□□ -0.46
VPS4B-206ENST00000591475 SCG2P13521 617 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 LONP1P36776 959 aaKnown RBP12.16□□□□□ -0.46
VPS4B-206ENST00000591475 PTGER2P43116 358 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 IL17AQ16552 155 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 GRIPAP1Q4V328 841 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 ARL6IP4Q66PJ3 421 aaKnown RBP12.16□□□□□ -0.46
VPS4B-206ENST00000591475 WWC2Q6AWC2 1192 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 TRAPPC11Q7Z392 1133 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 TXNRD3Q86VQ6 643 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 CHP1Q99653 195 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 RIOK1Q9BRS2 568 aaKnown RBP12.16□□□□□ -0.46
VPS4B-206ENST00000591475 VIPAS39Q9H9C1 493 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 GUCA1BQ9UMX6 200 aa12.16□□□□□ -0.46
VPS4B-206ENST00000591475 REXO2Q9Y3B8 237 aaKnown RBP12.16□□□□□ -0.46
VPS4B-206ENST00000591475 MYH1P12882 1939 aa12.15□□□□□ -0.46
VPS4B-206ENST00000591475 A0A1W2PQC6 194 aa12.15□□□□□ -0.46
VPS4B-206ENST00000591475 LGALS16A8MUM7 142 aa12.15□□□□□ -0.46
VPS4B-206ENST00000591475 SMIM22K7EJ46 135 aa12.15□□□□□ -0.46
VPS4B-206ENST00000591475 DPEP1P16444 411 aa12.15□□□□□ -0.46
VPS4B-206ENST00000591475 STAT6P42226 847 aa12.15□□□□□ -0.46
VPS4B-206ENST00000591475 PRCPP42785 496 aa12.15□□□□□ -0.46
VPS4B-206ENST00000591475 SRBD1Q8N5C6 995 aaKnown RBP12.15□□□□□ -0.46
VPS4B-206ENST00000591475 MB21D1Q8N884 522 aa12.15□□□□□ -0.46
VPS4B-206ENST00000591475 C7orf43Q8WVR3 580 aa12.15□□□□□ -0.46
VPS4B-206ENST00000591475 DNAJC7Q99615 494 aa12.15□□□□□ -0.46
VPS4B-206ENST00000591475 RASSF4Q9H2L5 321 aa12.15□□□□□ -0.46
VPS4B-206ENST00000591475 GDAQ9Y2T3 454 aa12.15□□□□□ -0.46
VPS4B-206ENST00000591475 LUC7L2Q9Y383 392 aaKnown RBP12.15□□□□□ -0.46
VPS4B-206ENST00000591475 CD2APQ9Y5K6 639 aa12.15□□□□□ -0.46
VPS4B-206ENST00000591475 PDS5AQ29RF7 1337 aaKnown RBP12.15□□□□□ -0.46
VPS4B-206ENST00000591475 CYP2D7A0A087X1C5 515 aa12.15□□□□□ -0.47
VPS4B-206ENST00000591475 TTC26A0AVF1 554 aa12.15□□□□□ -0.47
VPS4B-206ENST00000591475 KCNA3P22001 575 aa12.15□□□□□ -0.47
VPS4B-206ENST00000591475 EEF1GP26641 437 aaKnown RBP12.15□□□□□ -0.47
VPS4B-206ENST00000591475 USP14P54578 494 aa12.15□□□□□ -0.47
VPS4B-206ENST00000591475 MAP9Q49MG5 647 aa12.15□□□□□ -0.47
VPS4B-206ENST00000591475 ADSSL1Q8N142 457 aa12.15□□□□□ -0.47
VPS4B-206ENST00000591475 EHBP1Q8NDI1 1231 aa12.15□□□□□ -0.47
VPS4B-206ENST00000591475 RPGRIP1Q96KN7 1286 aa12.15□□□□□ -0.47
VPS4B-206ENST00000591475 THAP9Q9H5L6 903 aa12.15□□□□□ -0.47
VPS4B-206ENST00000591475 PIM2Q9P1W9 311 aa12.15□□□□□ -0.47
VPS4B-206ENST00000591475 CAPN11Q9UMQ6 739 aa12.15□□□□□ -0.47
VPS4B-206ENST00000591475 KIF13BQ9NQT8 1826 aa12.14□□□□□ -0.47
VPS4B-206ENST00000591475 LRRIQ3A6PVS8 624 aaPredicted RBP12.14□□□□□ -0.47
VPS4B-206ENST00000591475 MYO1CO00159 1063 aa12.14□□□□□ -0.47
VPS4B-206ENST00000591475 CALML3P27482 149 aa12.14□□□□□ -0.47
VPS4B-206ENST00000591475 DYNLL1P63167 89 aaKnown RBP12.14□□□□□ -0.47
VPS4B-206ENST00000591475 KRT83P78385 493 aa12.14□□□□□ -0.47
VPS4B-206ENST00000591475 CKAP4Q07065 602 aaKnown RBP12.14□□□□□ -0.47
VPS4B-206ENST00000591475 STIM1Q13586 685 aa12.14□□□□□ -0.47
VPS4B-206ENST00000591475 PFKFB3Q16875 520 aaPredicted RBP12.14□□□□□ -0.47
VPS4B-206ENST00000591475 ZNF662Q6ZS27 426 aa12.14□□□□□ -0.47
VPS4B-206ENST00000591475 SRLQ86TD4 932 aa12.14□□□□□ -0.47
VPS4B-206ENST00000591475 IRF2BP1Q8IU81 584 aa12.14□□□□□ -0.47
VPS4B-206ENST00000591475 GOLGA6L1Q8N7Z2 621 aa12.14□□□□□ -0.47
VPS4B-206ENST00000591475 ZC3H12CQ9C0D7 883 aaKnown RBP12.14□□□□□ -0.47
VPS4B-206ENST00000591475 SPON1Q9HCB6 807 aa12.14□□□□□ -0.47
VPS4B-206ENST00000591475 MAGEC2Q9UBF1 373 aaPredicted RBP12.14□□□□□ -0.47
VPS4B-206ENST00000591475 PPP1R1BQ9UD71 204 aaPredicted RBP12.14□□□□□ -0.47
VPS4B-206ENST00000591475 TRIM10Q9UDY6 481 aa12.14□□□□□ -0.47
VPS4B-206ENST00000591475 MAPK8IP1Q9UQF2 711 aa12.14□□□□□ -0.47
VPS4B-206ENST00000591475 RRP15Q9Y3B9 282 aaKnown RBP12.14□□□□□ -0.47
VPS4B-206ENST00000591475 SAR1BQ9Y6B6 198 aa12.14□□□□□ -0.47
VPS4B-206ENST00000591475 SRCAPQ6ZRS2 3230 aa12.14□□□□□ -0.47
VPS4B-206ENST00000591475 PES1O00541 588 aaKnown RBP12.13□□□□□ -0.47
VPS4B-206ENST00000591475 HERVK_113P62684 666 aa12.13□□□□□ -0.47
VPS4B-206ENST00000591475 SEMA3FQ13275 785 aa12.13□□□□□ -0.47
VPS4B-206ENST00000591475 KCNB1Q14721 858 aa12.13□□□□□ -0.47
VPS4B-206ENST00000591475 CCDC122Q5T0U0 273 aa12.13□□□□□ -0.47
VPS4B-206ENST00000591475 PAPD7Q5XG87 772 aaKnown RBP12.13□□□□□ -0.47
VPS4B-206ENST00000591475 CTR9Q6PD62 1173 aa12.13□□□□□ -0.47
VPS4B-206ENST00000591475 KIAA1328Q86T90 577 aa12.13□□□□□ -0.47
VPS4B-206ENST00000591475 NOC3LQ8WTT2 800 aaKnown RBP12.13□□□□□ -0.47
VPS4B-206ENST00000591475 EYA3Q99504 573 aa12.13□□□□□ -0.47
VPS4B-206ENST00000591475 MKRN1Q9UHC7 482 aaKnown RBP12.13□□□□□ -0.47
VPS4B-206ENST00000591475 LTBP1Q14766 1721 aa12.13□□□□□ -0.47
VPS4B-206ENST00000591475 TARSL2A2RTX5 802 aaKnown RBP12.13□□□□□ -0.47
VPS4B-206ENST00000591475 ORC4O43929 436 aa12.13□□□□□ -0.47
VPS4B-206ENST00000591475 CYLC1P35663 651 aaPredicted RBP12.13□□□□□ -0.47
VPS4B-206ENST00000591475 AARSP49588 968 aaKnown RBP eCLIP12.13□□□□□ -0.47
VPS4B-206ENST00000591475 DNM2P50570 870 aa12.13□□□□□ -0.47
VPS4B-206ENST00000591475 C4orf32Q8N8J7 132 aa12.13□□□□□ -0.47
VPS4B-206ENST00000591475 ZNF507Q8TCN5 953 aa12.13□□□□□ -0.47
VPS4B-206ENST00000591475 GPR101Q96P66 508 aaPredicted RBP12.13□□□□□ -0.47
VPS4B-206ENST00000591475 RTFDC1Q9BY42 306 aaPredicted RBP12.13□□□□□ -0.47
VPS4B-206ENST00000591475 TRIM34Q9BYJ4 488 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms