RNA–Protein interactions for RNA: ENST00000589349.5

DNMT1-219, Transcript of DNA methyltransferase 1, human

TSL 4

Gene DNMT1, Length 603 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-219	ENST00000589349	GBA2	Q9HCG7	927 aa	Predicted RBP	10.24	□□□□□ -0.77
DNMT1-219	ENST00000589349	KANSL3	Q9P2N6	904 aa		10.24	□□□□□ -0.77
DNMT1-219	ENST00000589349	MYO3B	Q8WXR4	1341 aa		10.24	□□□□□ -0.77
DNMT1-219	ENST00000589349	CACNA1F	O60840	1977 aa		10.23	□□□□□ -0.77
DNMT1-219	ENST00000589349	FOXN1	O15353	648 aa		10.23	□□□□□ -0.77
DNMT1-219	ENST00000589349	IPO8	O15397	1037 aa	Known RBP	10.23	□□□□□ -0.77
DNMT1-219	ENST00000589349	CT47B1	P0C2W7	299 aa	Predicted RBP	10.23	□□□□□ -0.77
DNMT1-219	ENST00000589349	HIBADH	P31937	336 aa	Known RBP	10.23	□□□□□ -0.77
DNMT1-219	ENST00000589349	NF2	P35240	595 aa		10.23	□□□□□ -0.77
DNMT1-219	ENST00000589349	GYG1	P46976	350 aa		10.23	□□□□□ -0.77
DNMT1-219	ENST00000589349	ZNF157	P51786	506 aa	Predicted RBP	10.23	□□□□□ -0.77
DNMT1-219	ENST00000589349	GRIK5	Q16478	980 aa		10.23	□□□□□ -0.77
DNMT1-219	ENST00000589349	NBPF9	Q3BBW0	867 aa		10.23	□□□□□ -0.77
DNMT1-219	ENST00000589349	CAVIN4	Q5BKX8	364 aa		10.23	□□□□□ -0.77
DNMT1-219	ENST00000589349	DACT2	Q5SW24	774 aa		10.23	□□□□□ -0.77
DNMT1-219	ENST00000589349	SAPCD2	Q86UD0	394 aa		10.23	□□□□□ -0.77
DNMT1-219	ENST00000589349	WFDC8	Q8IUA0	241 aa		10.23	□□□□□ -0.77
DNMT1-219	ENST00000589349	CDCA5	Q96FF9	252 aa		10.23	□□□□□ -0.77
DNMT1-219	ENST00000589349	SIL1	Q9H173	461 aa		10.23	□□□□□ -0.77
DNMT1-219	ENST00000589349	PGAP2	Q9UHJ9	254 aa		10.23	□□□□□ -0.77
DNMT1-219	ENST00000589349	HDAC5	Q9UQL6	1122 aa		10.23	□□□□□ -0.77
DNMT1-219	ENST00000589349	MROH5	Q6ZUA9	1318 aa		10.23	□□□□□ -0.77
DNMT1-219	ENST00000589349	MYH3	P11055	1940 aa		10.23	□□□□□ -0.77
DNMT1-219	ENST00000589349	MYO1B	O43795	1136 aa		10.22	□□□□□ -0.77
DNMT1-219	ENST00000589349	SMNDC1	O75940	238 aa	Known RBP eCLIP	10.22	□□□□□ -0.77	9e-6	■■■■□ 24.8
DNMT1-219	ENST00000589349	LBX1	P52954	281 aa		10.22	□□□□□ -0.77
DNMT1-219	ENST00000589349	ZNF280A	P59817	542 aa	Predicted RBP	10.22	□□□□□ -0.77
DNMT1-219	ENST00000589349	RAC1	P63000	192 aa		10.22	□□□□□ -0.77
DNMT1-219	ENST00000589349	LRRC24	Q50LG9	513 aa		10.22	□□□□□ -0.77
DNMT1-219	ENST00000589349	FAM129B	Q96TA1	746 aa		10.22	□□□□□ -0.77
DNMT1-219	ENST00000589349	USP44	Q9H0E7	712 aa		10.22	□□□□□ -0.77
DNMT1-219	ENST00000589349	CHRD	Q9H2X0	955 aa		10.22	□□□□□ -0.77
DNMT1-219	ENST00000589349	VEZT	Q9HBM0	779 aa		10.22	□□□□□ -0.77
DNMT1-219	ENST00000589349	SALL4	Q9UJQ4	1053 aa		10.22	□□□□□ -0.77
DNMT1-219	ENST00000589349	FOXD3	Q9UJU5	478 aa	Predicted RBP	10.22	□□□□□ -0.77
DNMT1-219	ENST00000589349	IFIT1	P09914	478 aa	Known RBP	10.21	□□□□□ -0.77
DNMT1-219	ENST00000589349	RARS	P54136	660 aa	Known RBP	10.21	□□□□□ -0.77
DNMT1-219	ENST00000589349	UBE4A	Q14139	1066 aa		10.21	□□□□□ -0.77
DNMT1-219	ENST00000589349	RGMB	Q6NW40	437 aa		10.21	□□□□□ -0.77
DNMT1-219	ENST00000589349	CEP120	Q8N960	986 aa		10.21	□□□□□ -0.77
DNMT1-219	ENST00000589349	KAZALD1	Q96I82	304 aa		10.21	□□□□□ -0.77
DNMT1-219	ENST00000589349	DMRTB1	Q96MA1	342 aa		10.21	□□□□□ -0.77
DNMT1-219	ENST00000589349	RBCK1	Q9BYM8	510 aa		10.21	□□□□□ -0.77
DNMT1-219	ENST00000589349	DCTN4	Q9UJW0	460 aa		10.21	□□□□□ -0.77
DNMT1-219	ENST00000589349	KIF16B	Q96L93	1317 aa		10.21	□□□□□ -0.78
DNMT1-219	ENST00000589349	CLRN2	A0PK11	232 aa		10.2	□□□□□ -0.78
DNMT1-219	ENST00000589349	WNT10B	O00744	389 aa		10.2	□□□□□ -0.78
DNMT1-219	ENST00000589349	EDN3	P14138	238 aa		10.2	□□□□□ -0.78
DNMT1-219	ENST00000589349	ATP11A	P98196	1134 aa		10.2	□□□□□ -0.78
DNMT1-219	ENST00000589349	CFAP100	Q494V2	611 aa		10.2	□□□□□ -0.78
DNMT1-219	ENST00000589349	MFSD14B	Q5SR56	506 aa		10.2	□□□□□ -0.78
DNMT1-219	ENST00000589349	GDF6	Q6KF10	455 aa	Predicted RBP	10.2	□□□□□ -0.78
DNMT1-219	ENST00000589349	DTWD1	Q8N5C7	304 aa		10.2	□□□□□ -0.78
DNMT1-219	ENST00000589349	ADAMTSL1	Q8N6G6	1762 aa		10.2	□□□□□ -0.78
DNMT1-219	ENST00000589349	ANKRD44	Q8N8A2	993 aa		10.2	□□□□□ -0.78
DNMT1-219	ENST00000589349	GML	Q99445	158 aa		10.2	□□□□□ -0.78
DNMT1-219	ENST00000589349	PBX4	Q9BYU1	374 aa		10.2	□□□□□ -0.78
DNMT1-219	ENST00000589349	TTF2	Q9UNY4	1162 aa	Known RBP	10.2	□□□□□ -0.78
DNMT1-219	ENST00000589349	LRRFIP2	Q9Y608	721 aa	Known RBP	10.2	□□□□□ -0.78
DNMT1-219	ENST00000589349	UTY	O14607	1347 aa		10.19	□□□□□ -0.78
DNMT1-219	ENST00000589349	UBE2Q2L	H0YL09	131 aa		10.19	□□□□□ -0.78
DNMT1-219	ENST00000589349	EREG	O14944	169 aa		10.19	□□□□□ -0.78
DNMT1-219	ENST00000589349	BCAR3	O75815	825 aa		10.19	□□□□□ -0.78
DNMT1-219	ENST00000589349	SLC5A1	P13866	664 aa		10.19	□□□□□ -0.78
DNMT1-219	ENST00000589349	MAP2K2	P36507	400 aa		10.19	□□□□□ -0.78
DNMT1-219	ENST00000589349	NOG	Q13253	232 aa		10.19	□□□□□ -0.78
DNMT1-219	ENST00000589349	CEP135	Q66GS9	1140 aa		10.19	□□□□□ -0.78
DNMT1-219	ENST00000589349	ARMC9	Q7Z3E5	817 aa		10.19	□□□□□ -0.78
DNMT1-219	ENST00000589349	APOBEC3F	Q8IUX4	373 aa	Known RBP	10.19	□□□□□ -0.78
DNMT1-219	ENST00000589349	HOMEZ	Q8IX15	550 aa		10.19	□□□□□ -0.78
DNMT1-219	ENST00000589349	DMRTC2	Q8IXT2	367 aa	Predicted RBP	10.19	□□□□□ -0.78
DNMT1-219	ENST00000589349	FTSJ3	Q8IY81	847 aa	Known RBP	10.19	□□□□□ -0.78
DNMT1-219	ENST00000589349	TRMT2A	Q8IZ69	625 aa	Known RBP	10.19	□□□□□ -0.78
DNMT1-219	ENST00000589349	RASSF4	Q9H2L5	321 aa		10.19	□□□□□ -0.78
DNMT1-219	ENST00000589349	ZFYVE28	Q9HCC9	887 aa		10.19	□□□□□ -0.78
DNMT1-219	ENST00000589349	RIPOR2	Q9Y4F9	1068 aa		10.19	□□□□□ -0.78
DNMT1-219	ENST00000589349	SCN9A	Q15858	1988 aa		10.18	□□□□□ -0.78
DNMT1-219	ENST00000589349		A0A0A0MRY4	1105 aa		10.18	□□□□□ -0.78
DNMT1-219	ENST00000589349	EYA2	O00167	538 aa		10.18	□□□□□ -0.78
DNMT1-219	ENST00000589349	PDE8B	O95263	885 aa		10.18	□□□□□ -0.78
DNMT1-219	ENST00000589349	GNAI3	P08754	354 aa		10.18	□□□□□ -0.78
DNMT1-219	ENST00000589349	IL1R1	P14778	569 aa		10.18	□□□□□ -0.78
DNMT1-219	ENST00000589349	PUM3	Q15397	648 aa	Known RBP	10.18	□□□□□ -0.78
DNMT1-219	ENST00000589349	RABL6	Q3YEC7	729 aa	Predicted RBP	10.18	□□□□□ -0.78
DNMT1-219	ENST00000589349	MOB2	Q70IA6	237 aa		10.18	□□□□□ -0.78
DNMT1-219	ENST00000589349	FAM84B	Q96KN1	310 aa	Predicted RBP	10.18	□□□□□ -0.78
DNMT1-219	ENST00000589349	MEIS3	Q99687	375 aa		10.18	□□□□□ -0.78
DNMT1-219	ENST00000589349	MUC3B	Q9H195	1237 aa		10.18	□□□□□ -0.78
DNMT1-219	ENST00000589349	TRIM33	Q9UPN9	1127 aa		10.18	□□□□□ -0.78
DNMT1-219	ENST00000589349	PITPNM2	Q9BZ72	1349 aa		10.17	□□□□□ -0.78
DNMT1-219	ENST00000589349	KRBA1	A5PL33	1030 aa		10.17	□□□□□ -0.78
DNMT1-219	ENST00000589349	SRGAP3	O43295	1099 aa		10.17	□□□□□ -0.78
DNMT1-219	ENST00000589349	ELN	P15502	786 aa		10.17	□□□□□ -0.78
DNMT1-219	ENST00000589349	MAPK1	P28482	360 aa		10.17	□□□□□ -0.78
DNMT1-219	ENST00000589349	MMP14	P50281	582 aa		10.17	□□□□□ -0.78
DNMT1-219	ENST00000589349	KIF23	Q02241	960 aa	Predicted RBP	10.17	□□□□□ -0.78
DNMT1-219	ENST00000589349	OS9	Q13438	667 aa	Predicted RBP	10.17	□□□□□ -0.78
DNMT1-219	ENST00000589349	GORAB	Q5T7V8	394 aa		10.17	□□□□□ -0.78
DNMT1-219	ENST00000589349	ZKSCAN2	Q63HK3	967 aa		10.17	□□□□□ -0.78
DNMT1-219	ENST00000589349	C15orf52	Q6ZUT6	534 aa	Known RBP	10.17	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms