RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 CCDC129Q6ZRS4 1044 aa14.05□□□□□ -0.16
LIG3-209ENST00000586435 KCTD1Q719H9 257 aa14.05□□□□□ -0.16
LIG3-209ENST00000586435 TLK2Q86UE8 772 aa14.05□□□□□ -0.16
LIG3-209ENST00000586435 TICAM2Q86XR7 235 aa14.05□□□□□ -0.16
LIG3-209ENST00000586435 TMEM199Q8N511 208 aa14.05□□□□□ -0.16
LIG3-209ENST00000586435 SLC43A3Q8NBI5 491 aa14.05□□□□□ -0.16
LIG3-209ENST00000586435 MORC4Q8TE76 937 aa14.05□□□□□ -0.16
LIG3-209ENST00000586435 EVI5LQ96CN4 794 aa14.05□□□□□ -0.16
LIG3-209ENST00000586435 CYP39A1Q9NYL5 469 aa14.05□□□□□ -0.16
LIG3-209ENST00000586435 PRR12Q9ULL5 1215 aa14.05□□□□□ -0.16
LIG3-209ENST00000586435 Q9Y3F1 56 aa14.05□□□□□ -0.16
LIG3-209ENST00000586435 GBF1Q92538 1859 aa14.05□□□□□ -0.16
LIG3-209ENST00000586435 LOC102724159A0A0B4J2E5 919 aa14.04□□□□□ -0.16
LIG3-209ENST00000586435 NMT2O60551 498 aa14.04□□□□□ -0.16
LIG3-209ENST00000586435 ICAM1P05362 532 aa14.04□□□□□ -0.16
LIG3-209ENST00000586435 CTDSPL2Q05D32 466 aa14.04□□□□□ -0.16
LIG3-209ENST00000586435 PWP2Q15269 919 aaKnown RBP14.04□□□□□ -0.16
LIG3-209ENST00000586435 TMEM240Q5SV17 173 aa14.04□□□□□ -0.16
LIG3-209ENST00000586435 BTNL9Q6UXG8 535 aa14.04□□□□□ -0.16
LIG3-209ENST00000586435 C16orf59Q7L2K0 433 aa14.04□□□□□ -0.16
LIG3-209ENST00000586435 DCAF4Q8WV16 495 aa14.04□□□□□ -0.16
LIG3-209ENST00000586435 VTI1AQ96AJ9 217 aa14.04□□□□□ -0.16
LIG3-209ENST00000586435 RANBP17Q9H2T7 1088 aaKnown RBP14.04□□□□□ -0.16
LIG3-209ENST00000586435 HELLSQ9NRZ9 838 aa14.04□□□□□ -0.16
LIG3-209ENST00000586435 ZMYM6O95789 1325 aa14.04□□□□□ -0.16
LIG3-209ENST00000586435 RANBP6O60518 1105 aaKnown RBP14.03□□□□□ -0.16
LIG3-209ENST00000586435 CSF2RAP15509 400 aa14.03□□□□□ -0.16
LIG3-209ENST00000586435 BEX3Q00994 111 aa14.03□□□□□ -0.16
LIG3-209ENST00000586435 FSCN1Q16658 493 aaKnown RBP14.03□□□□□ -0.16
LIG3-209ENST00000586435 MUM1L1Q5H9M0 696 aa14.03□□□□□ -0.16
LIG3-209ENST00000586435 VPS53Q5VIR6 699 aa14.03□□□□□ -0.16
LIG3-209ENST00000586435 IQSEC1Q6DN90 963 aa14.03□□□□□ -0.16
LIG3-209ENST00000586435 RASGRP2Q7LDG7 609 aa14.03□□□□□ -0.16
LIG3-209ENST00000586435 TIFAQ96CG3 184 aa14.03□□□□□ -0.16
LIG3-209ENST00000586435 VTA1Q9NP79 307 aa14.03□□□□□ -0.16
LIG3-209ENST00000586435 CCPG1Q9ULG6 757 aa14.03□□□□□ -0.16
LIG3-209ENST00000586435 LAMA4Q16363 1823 aa14.03□□□□□ -0.16
LIG3-209ENST00000586435 VCANP13611 3396 aa14.02□□□□□ -0.16
LIG3-209ENST00000586435 PRUNE2Q8WUY3 3088 aa14.02□□□□□ -0.16
LIG3-209ENST00000586435 TTC28Q96AY4 2481 aa14.02□□□□□ -0.16
LIG3-209ENST00000586435 SCN10AQ9Y5Y9 1956 aa14.02□□□□□ -0.16
LIG3-209ENST00000586435 ZEB2O60315 1214 aa14.02□□□□□ -0.17
LIG3-209ENST00000586435 SMPD1P17405 629 aa14.02□□□□□ -0.17
LIG3-209ENST00000586435 GRIN2CQ14957 1233 aa14.02□□□□□ -0.17
LIG3-209ENST00000586435 TAPT1Q6NXT6 567 aa14.02□□□□□ -0.17
LIG3-209ENST00000586435 CXCL17Q6UXB2 119 aa14.02□□□□□ -0.17
LIG3-209ENST00000586435 NOL8Q76FK4 1167 aaKnown RBP14.02□□□□□ -0.17
LIG3-209ENST00000586435 PPP1R12CQ9BZL4 782 aa14.02□□□□□ -0.17
LIG3-209ENST00000586435 AP5M1Q9H0R1 490 aa14.02□□□□□ -0.17
LIG3-209ENST00000586435 ZNF576Q9H609 170 aa14.02□□□□□ -0.17
LIG3-209ENST00000586435 INCENPQ9NQS7 918 aa14.02□□□□□ -0.17
LIG3-209ENST00000586435 TCP11L1Q9NUJ3 509 aa14.02□□□□□ -0.17
LIG3-209ENST00000586435 ADD3Q9UEY8 706 aaKnown RBP14.02□□□□□ -0.17
LIG3-209ENST00000586435 ZBTB47Q9UFB7 747 aaPredicted RBP14.02□□□□□ -0.17
LIG3-209ENST00000586435 TOP1P11387 765 aaKnown RBP14.01□□□□□ -0.17
LIG3-209ENST00000586435 PDE1AP54750 535 aa14.01□□□□□ -0.17
LIG3-209ENST00000586435 RRP1P56182 461 aaKnown RBP14.01□□□□□ -0.17
LIG3-209ENST00000586435 ITGA7Q13683 1181 aa14.01□□□□□ -0.17
LIG3-209ENST00000586435 CCDC96Q2M329 555 aa14.01□□□□□ -0.17
LIG3-209ENST00000586435 NSMFQ6X4W1 530 aa14.01□□□□□ -0.17
LIG3-209ENST00000586435 ZNF365Q70YC5 407 aa14.01□□□□□ -0.17
LIG3-209ENST00000586435 FBXO16Q8IX29 292 aaPredicted RBP14.01□□□□□ -0.17
LIG3-209ENST00000586435 HERVK_113Q902F9 699 aa14.01□□□□□ -0.17
LIG3-209ENST00000586435 PBX4Q9BYU1 374 aa14.01□□□□□ -0.17
LIG3-209ENST00000586435 IL23AQ9NPF7 189 aa14.01□□□□□ -0.17
LIG3-209ENST00000586435 PNMA2Q9UL42 364 aa14.01□□□□□ -0.17
LIG3-209ENST00000586435 GRIN2DO15399 1336 aa14□□□□□ -0.17
LIG3-209ENST00000586435 DYNC1LI2O43237 492 aaPredicted RBP14□□□□□ -0.17
LIG3-209ENST00000586435 FGAP02671 866 aa14□□□□□ -0.17
LIG3-209ENST00000586435 PCP11498 1178 aaKnown RBP14□□□□□ -0.17
LIG3-209ENST00000586435 CYP2C18P33260 490 aa14□□□□□ -0.17
LIG3-209ENST00000586435 ALDH5A1P51649 535 aaPredicted RBP14□□□□□ -0.17
LIG3-209ENST00000586435 SNAP25P60880 206 aa14□□□□□ -0.17
LIG3-209ENST00000586435 HDAC1Q13547 482 aaPredicted RBP14□□□□□ -0.17
LIG3-209ENST00000586435 DUSP28Q4G0W2 176 aa14□□□□□ -0.17
LIG3-209ENST00000586435 MCMDC2Q4G0Z9 681 aa14□□□□□ -0.17
LIG3-209ENST00000586435 ANKRD45Q5TZF3 282 aa14□□□□□ -0.17
LIG3-209ENST00000586435 SYDE2Q5VT97 1194 aa14□□□□□ -0.17
LIG3-209ENST00000586435 CHMP4CQ96CF2 233 aa14□□□□□ -0.17
LIG3-209ENST00000586435 TMEM47Q9BQJ4 181 aa14□□□□□ -0.17
LIG3-209ENST00000586435 MTIF3Q9H2K0 278 aaKnown RBP14□□□□□ -0.17
LIG3-209ENST00000586435 HIPK3Q9H422 1215 aa14□□□□□ -0.17
LIG3-209ENST00000586435 PDGFCQ9NRA1 345 aa14□□□□□ -0.17
LIG3-209ENST00000586435 TANC1Q9C0D5 1861 aa13.99□□□□□ -0.17
LIG3-209ENST00000586435 WDR19Q8NEZ3 1342 aa13.99□□□□□ -0.17
LIG3-209ENST00000586435 A0A0D9SFI3 127 aa13.99□□□□□ -0.17
LIG3-209ENST00000586435 RBM47A0AV96 593 aaKnown RBP13.99□□□□□ -0.17
LIG3-209ENST00000586435 ACRP10323 421 aa13.99□□□□□ -0.17
LIG3-209ENST00000586435 RAB30Q15771 203 aa13.99□□□□□ -0.17
LIG3-209ENST00000586435 TTBK2Q6IQ55 1244 aa13.99□□□□□ -0.17
LIG3-209ENST00000586435 EEPD1Q7L9B9 569 aa13.99□□□□□ -0.17
LIG3-209ENST00000586435 FAM227BQ96M60 508 aa13.99□□□□□ -0.17
LIG3-209ENST00000586435 TTC14Q96N46 770 aa13.99□□□□□ -0.17
LIG3-209ENST00000586435 NOC4LQ9BVI4 516 aaKnown RBP13.99□□□□□ -0.17
LIG3-209ENST00000586435 MTMR7Q9Y216 660 aa13.99□□□□□ -0.17
LIG3-209ENST00000586435 DDX49Q9Y6V7 483 aaKnown RBP13.99□□□□□ -0.17
LIG3-209ENST00000586435 MYH6P13533 1939 aa13.99□□□□□ -0.17
LIG3-209ENST00000586435 SPTBN5Q9NRC6 3674 aaKnown RBP13.98□□□□□ -0.17
LIG3-209ENST00000586435 NFIBO00712 420 aa13.98□□□□□ -0.17
LIG3-209ENST00000586435 B4GALT4O60513 344 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms