RNA–Protein interactions for RNA: ENST00000583800.1

SMCHD1-210, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 865 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-210ENST00000583800 C12orf60Q5U649 245 aa9.37□□□□□ -0.91
SMCHD1-210ENST00000583800 MYSM1Q5VVJ2 828 aa9.37□□□□□ -0.91
SMCHD1-210ENST00000583800 C16orf86Q6ZW13 317 aa9.37□□□□□ -0.91
SMCHD1-210ENST00000583800 SIRT2Q8IXJ6 389 aa9.37□□□□□ -0.91
SMCHD1-210ENST00000583800 LENG1Q96BZ8 264 aaPredicted RBP9.37□□□□□ -0.91
SMCHD1-210ENST00000583800 MMP19Q99542 508 aa9.37□□□□□ -0.91
SMCHD1-210ENST00000583800 CDX2Q99626 313 aaPredicted RBP9.37□□□□□ -0.91
SMCHD1-210ENST00000583800 XPNPEP3Q9NQH7 507 aa9.37□□□□□ -0.91
SMCHD1-210ENST00000583800 ATP8A2Q9NTI2 1148 aa9.37□□□□□ -0.91
SMCHD1-210ENST00000583800 ROBO3Q96MS0 1386 aa9.37□□□□□ -0.91
SMCHD1-210ENST00000583800 ZBED9Q6R2W3 1325 aa9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 USP17L12C9JPN9 530 aa9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 USP17L21D6R901 530 aa9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 SLC25A27O95847 323 aa9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 PGK1P00558 417 aa9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 RARBP10826 455 aa9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 ITGB8P26012 769 aa9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 RFC5P40937 340 aa9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 TLE2Q04725 743 aa9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 TMEM259Q4ZIN3 620 aa9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 FAM83BQ5T0W9 1011 aa9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 C1orf53Q5VUE5 145 aa9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 RIOX2Q8IUF8 465 aa9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 RPAP2Q8IXW5 612 aaPredicted RBP9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 AMOTL1Q8IY63 956 aa9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 CCDC17Q96LX7 622 aa9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 TTYH1Q9H313 450 aaPredicted RBP9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 FAM217BQ9NTX9 383 aaPredicted RBP9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 ZNF214Q9UL59 606 aaPredicted RBP9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 PPP1R9AQ9ULJ8 1098 aa9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 ADAMTS5Q9UNA0 930 aa9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 PHF24Q9UPV7 400 aa9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 SLC4A4Q9Y6R1 1079 aa9.36□□□□□ -0.91
SMCHD1-210ENST00000583800 A0A1W2PQ45 241 aaPredicted RBP9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 A0A1W2PQY0 241 aa9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 VWA5AO00534 786 aa9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 PQBP1O60828 265 aaKnown RBP9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 HMMRO75330 724 aa9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 CLTBP09497 229 aa9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 ZNF865P0CJ78 1059 aaPredicted RBP9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 ATP5JP18859 108 aa9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 STAT3P40763 770 aa9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 EPHB4P54760 987 aa9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 KCTD2Q14681 263 aa9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 ZNF792Q3KQV3 632 aa9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 CTR9Q6PD62 1173 aa9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 STK11IPQ8N1F8 1099 aa9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 REPS2Q8NFH8 660 aa9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 MAFAQ8NHW3 353 aaPredicted RBP9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 MYLIPQ8WY64 445 aa9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 GBF1Q92538 1859 aa9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 HAUS7Q99871 368 aa9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 TINF2Q9BSI4 451 aa9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.35□□□□□ -0.913e-7■□□□□ 10.9
SMCHD1-210ENST00000583800 PUS7LQ9H0K6 701 aaKnown RBP9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 SEMA6BQ9H3T3 888 aa9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 KANSL2Q9H9L4 492 aa9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 NRBP1Q9UHY1 535 aa9.35□□□□□ -0.91
SMCHD1-210ENST00000583800 MYO9BQ13459 2157 aa9.34□□□□□ -0.91
SMCHD1-210ENST00000583800 LRRC37A2A6NM11 1700 aa9.34□□□□□ -0.91
SMCHD1-210ENST00000583800 RAB11FIP3O75154 756 aa9.34□□□□□ -0.91
SMCHD1-210ENST00000583800 ADAMTS4O75173 837 aa9.34□□□□□ -0.91
SMCHD1-210ENST00000583800 AKR1A1P14550 325 aa9.34□□□□□ -0.91
SMCHD1-210ENST00000583800 CLK2P49760 499 aaKnown RBP9.34□□□□□ -0.91
SMCHD1-210ENST00000583800 COPS2P61201 443 aa9.34□□□□□ -0.91
SMCHD1-210ENST00000583800 SMAD3P84022 425 aaKnown RBP9.34□□□□□ -0.91
SMCHD1-210ENST00000583800 UBE3CQ15386 1083 aa9.34□□□□□ -0.91
SMCHD1-210ENST00000583800 TRIM67Q6ZTA4 783 aa9.34□□□□□ -0.91
SMCHD1-210ENST00000583800 NUDT18Q6ZVK8 323 aa9.34□□□□□ -0.91
SMCHD1-210ENST00000583800 RNF180Q86T96 592 aa9.34□□□□□ -0.91
SMCHD1-210ENST00000583800 RNPC3Q96LT9 517 aaKnown RBP9.34□□□□□ -0.91
SMCHD1-210ENST00000583800 NUP88Q99567 741 aaPredicted RBP9.34□□□□□ -0.91
SMCHD1-210ENST00000583800 ZBTB40Q9NUA8 1239 aa9.34□□□□□ -0.91
SMCHD1-210ENST00000583800 ARPP21Q9UBL0 812 aaPredicted RBP9.34□□□□□ -0.91
SMCHD1-210ENST00000583800 DDX19BQ9UMR2 479 aa9.34□□□□□ -0.91
SMCHD1-210ENST00000583800 DIS3Q9Y2L1 958 aaKnown RBP9.34□□□□□ -0.91
SMCHD1-210ENST00000583800 VCANP13611 3396 aa9.34□□□□□ -0.91
SMCHD1-210ENST00000583800 SYNRGQ9UMZ2 1314 aa9.33□□□□□ -0.92
SMCHD1-210ENST00000583800 PRUNE2Q8WUY3 3088 aa9.33□□□□□ -0.92
SMCHD1-210ENST00000583800 MYADML2A6NDP7 307 aa9.33□□□□□ -0.92
SMCHD1-210ENST00000583800 SMARCA5O60264 1052 aaPredicted RBP9.33□□□□□ -0.92
SMCHD1-210ENST00000583800 FOSL2P15408 326 aa9.33□□□□□ -0.92
SMCHD1-210ENST00000583800 RAG1P15918 1043 aa9.33□□□□□ -0.92
SMCHD1-210ENST00000583800 COPB2P35606 906 aa9.33□□□□□ -0.92
SMCHD1-210ENST00000583800 SLC4A3P48751 1232 aa9.33□□□□□ -0.92
SMCHD1-210ENST00000583800 KCNA1Q09470 495 aa9.33□□□□□ -0.92
SMCHD1-210ENST00000583800 PPP2R2DQ66LE6 453 aa9.33□□□□□ -0.92
SMCHD1-210ENST00000583800 SNRNP48Q6IEG0 339 aaKnown RBP9.33□□□□□ -0.92
SMCHD1-210ENST00000583800 CALR3Q96L12 384 aaKnown RBP9.33□□□□□ -0.92
SMCHD1-210ENST00000583800 SLF1Q9BQI6 1058 aa9.33□□□□□ -0.92
SMCHD1-210ENST00000583800 STARD7Q9NQZ5 370 aa9.33□□□□□ -0.92
SMCHD1-210ENST00000583800 ZHX1Q9UKY1 873 aaPredicted RBP9.33□□□□□ -0.92
SMCHD1-210ENST00000583800 CNPY2Q9Y2B0 182 aa9.33□□□□□ -0.92
SMCHD1-210ENST00000583800 RIPK3Q9Y572 518 aa9.33□□□□□ -0.92
SMCHD1-210ENST00000583800 TACC3Q9Y6A5 838 aa9.33□□□□□ -0.92
SMCHD1-210ENST00000583800 LCTP09848 1927 aa9.33□□□□□ -0.92
SMCHD1-210ENST00000583800 KIAA0355O15063 1070 aa9.32□□□□□ -0.92
SMCHD1-210ENST00000583800 BRD1O95696 1058 aa9.32□□□□□ -0.92
SMCHD1-210ENST00000583800 SNAI1O95863 264 aaPredicted RBP9.32□□□□□ -0.92
SMCHD1-210ENST00000583800 NDUFB10O96000 172 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms