RNA–Protein interactions for RNA: ENST00000582114.5

CDK5RAP3-223, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 2

Gene CDK5RAP3, Length 647 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-223	ENST00000582114	TNFAIP2	Q03169	654 aa		13.74	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	NMI	Q13287	307 aa	Predicted RBP	13.74	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	HDAC1	Q13547	482 aa	Predicted RBP	13.74	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	TKFC	Q3LXA3	575 aa		13.74	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	MCMDC2	Q4G0Z9	681 aa		13.74	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	FBXO16	Q8IX29	292 aa	Predicted RBP	13.74	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	PCSK9	Q8NBP7	692 aa	Known RBP	13.74	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	TOX2	Q96NM4	488 aa		13.74	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	TTYH1	Q9H313	450 aa	Predicted RBP	13.74	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	GPCPD1	Q9NPB8	672 aa		13.74	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	PDGFC	Q9NRA1	345 aa		13.74	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	ELP1	O95163	1332 aa		13.73	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114		A0A0U1RQG5	324 aa	Predicted RBP	13.73	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	ASB14	A6NK59	587 aa		13.73	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	CTAGE5	O15320	804 aa		13.73	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	ORC4	O43929	436 aa		13.73	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	PLA2G6	O60733	806 aa		13.73	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	TIMP1	P01033	207 aa		13.73	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	HSPD1	P10809	573 aa	Known RBP	13.73	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	SMAD3	P84022	425 aa	Known RBP	13.73	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	ALX1	Q15699	326 aa		13.73	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	TMEM63B	Q5T3F8	832 aa		13.73	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	TLK2	Q86UE8	772 aa		13.73	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	DCAF4	Q8WV16	495 aa		13.73	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	MYLIP	Q8WY64	445 aa		13.73	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	TMEM47	Q9BQJ4	181 aa		13.73	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	PPP1R12C	Q9BZL4	782 aa		13.73	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	CYP39A1	Q9NYL5	469 aa		13.73	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	TBX21	Q9UL17	535 aa		13.73	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	LRRC37A2	A6NM11	1700 aa		13.73	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	ARVCF	O00192	962 aa		13.72	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	DYNC1LI2	O43237	492 aa	Predicted RBP	13.72	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	ICAM1	P05362	532 aa		13.72	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	SMPD1	P17405	629 aa		13.72	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	CDK7	P50613	346 aa		13.72	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	SYDE2	Q5VT97	1194 aa		13.72	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	CXCL17	Q6UXB2	119 aa		13.72	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	RANBP17	Q9H2T7	1088 aa	Known RBP	13.72	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	GNE	Q9Y223	722 aa	Known RBP	13.72	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	LCT	P09848	1927 aa		13.72	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	MROH7	Q68CQ1	1323 aa		13.71	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	CCDC171	Q6TFL3	1326 aa		13.71	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	PTPDC1	A2A3K4	754 aa		13.71	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	NFIB	O00712	420 aa		13.71	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	FGR	P09769	529 aa		13.71	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	ACR	P10323	421 aa		13.71	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	TOP1	P11387	765 aa	Known RBP	13.71	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	CSF2RA	P15509	400 aa		13.71	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	NOV	P48745	357 aa		13.71	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	BAAT	Q14032	418 aa	Predicted RBP	13.71	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	FSCN1	Q16658	493 aa	Known RBP	13.71	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	TBC1D10C	Q8IV04	446 aa		13.71	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	FAM126B	Q8IXS8	530 aa		13.71	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	13.71	□□□□□ -0.21	4e-22	■□□□□ 10.4
CDK5RAP3-223	ENST00000582114	ZKSCAN3	Q9BRR0	538 aa		13.71	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	AP5M1	Q9H0R1	490 aa		13.71	□□□□□ -0.21
CDK5RAP3-223	ENST00000582114	TLR3	O15455	904 aa	Known RBP	13.7	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	PDHB	P11177	359 aa		13.7	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	CYP2C18	P33260	490 aa		13.7	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	PSMC6	P62333	389 aa		13.7	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	MFSD5	Q6N075	450 aa		13.7	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	TAPT1	Q6NXT6	567 aa		13.7	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	SLC30A10	Q6XR72	485 aa		13.7	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	KIAA1211	Q6ZU35	1233 aa		13.7	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	MAFA	Q8NHW3	353 aa	Predicted RBP	13.7	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	NEDD4	P46934	1319 aa		13.69	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	UMODL1	Q5DID0	1318 aa		13.69	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	PRUNE2	Q8WUY3	3088 aa		13.69	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	GRXCR1	A8MXD5	290 aa		13.69	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	FOSL2	P15408	326 aa		13.69	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	DNAJB2	P25686	324 aa		13.69	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	CALML3	P27482	149 aa		13.69	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	ALDH5A1	P51649	535 aa	Predicted RBP	13.69	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	PPIG	Q13427	754 aa	Known RBP eCLIP	13.69	□□□□□ -0.22	2e-10	■■■■□ 19.7
CDK5RAP3-223	ENST00000582114	ITGA7	Q13683	1181 aa		13.69	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	TMEM240	Q5SV17	173 aa		13.69	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	AKNAD1	Q5T1N1	836 aa		13.69	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	BTNL9	Q6UXG8	535 aa		13.69	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	MFSD6	Q6ZSS7	791 aa		13.69	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	C16orf59	Q7L2K0	433 aa		13.69	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	CPVL	Q9H3G5	476 aa		13.69	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	GRIN2D	O15399	1336 aa		13.68	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	13.68	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	13.68	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	CD4	P01730	458 aa		13.68	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	IGHD	P01880	384 aa		13.68	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	GOLGA8H	P0CJ92	632 aa		13.68	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	SDS	P20132	328 aa		13.68	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	IQSEC1	Q6DN90	963 aa		13.68	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	ZNF365	Q70YC5	407 aa		13.68	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	TMEM199	Q8N511	208 aa		13.68	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	COL25A1	Q9BXS0	654 aa	Predicted RBP	13.68	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	TRPV6	Q9H1D0	765 aa		13.68	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	VTA1	Q9NP79	307 aa		13.68	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	TCP11L1	Q9NUJ3	509 aa		13.68	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	ZMYM6	O95789	1325 aa		13.67	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	ZEB2	O60315	1214 aa		13.67	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	B4GALT4	O60513	344 aa		13.67	□□□□□ -0.22
CDK5RAP3-223	ENST00000582114	PBX2	P40425	430 aa		13.67	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms