RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 CTDSPL2Q05D32 466 aa12.56□□□□□ -0.4
RFFL-209ENST00000581265 ALX1Q15699 326 aa12.56□□□□□ -0.4
RFFL-209ENST00000581265 AKNAD1Q5T1N1 836 aa12.56□□□□□ -0.4
RFFL-209ENST00000581265 MFSD5Q6N075 450 aa12.56□□□□□ -0.4
RFFL-209ENST00000581265 VTI1AQ96AJ9 217 aa12.56□□□□□ -0.4
RFFL-209ENST00000581265 TRERF1Q96PN7 1200 aa12.56□□□□□ -0.4
RFFL-209ENST00000581265 INCENPQ9NQS7 918 aa12.56□□□□□ -0.4
RFFL-209ENST00000581265 RNF146Q9NTX7 359 aa12.56□□□□□ -0.4
RFFL-209ENST00000581265 STX8Q9UNK0 236 aa12.56□□□□□ -0.4
RFFL-209ENST00000581265 A0A0U1RQG5 324 aaPredicted RBP12.55□□□□□ -0.4
RFFL-209ENST00000581265 ORC4O43929 436 aa12.55□□□□□ -0.4
RFFL-209ENST00000581265 NMT2O60551 498 aa12.55□□□□□ -0.4
RFFL-209ENST00000581265 TNFAIP2Q03169 654 aa12.55□□□□□ -0.4
RFFL-209ENST00000581265 IKQ13123 557 aaPredicted RBP12.55□□□□□ -0.4
RFFL-209ENST00000581265 KCTD1Q719H9 257 aa12.55□□□□□ -0.4
RFFL-209ENST00000581265 C16orf59Q7L2K0 433 aa12.55□□□□□ -0.4
RFFL-209ENST00000581265 TICAM2Q86XR7 235 aa12.55□□□□□ -0.4
RFFL-209ENST00000581265 EVI5LQ96CN4 794 aa12.55□□□□□ -0.4
RFFL-209ENST00000581265 PRDM12Q9H4Q4 367 aa12.55□□□□□ -0.4
RFFL-209ENST00000581265 PRR12Q9ULL5 1215 aa12.55□□□□□ -0.4
RFFL-209ENST00000581265 ISY1Q9ULR0 285 aaKnown RBP12.55□□□□□ -0.4
RFFL-209ENST00000581265 GNEQ9Y223 722 aaKnown RBP12.55□□□□□ -0.4
RFFL-209ENST00000581265 ARIH1Q9Y4X5 557 aaPredicted RBP12.55□□□□□ -0.4
RFFL-209ENST00000581265 MCM3APO60318 1980 aa12.54□□□□□ -0.4
RFFL-209ENST00000581265 RANBP6O60518 1105 aaKnown RBP12.54□□□□□ -0.4
RFFL-209ENST00000581265 CD4P01730 458 aa12.54□□□□□ -0.4
RFFL-209ENST00000581265 ALAS1P13196 640 aa12.54□□□□□ -0.4
RFFL-209ENST00000581265 ANKRD45Q5TZF3 282 aa12.54□□□□□ -0.4
RFFL-209ENST00000581265 VPS53Q5VIR6 699 aa12.54□□□□□ -0.4
RFFL-209ENST00000581265 IQSEC1Q6DN90 963 aa12.54□□□□□ -0.4
RFFL-209ENST00000581265 FAM126BQ8IXS8 530 aa12.54□□□□□ -0.4
RFFL-209ENST00000581265 SLC43A3Q8NBI5 491 aa12.54□□□□□ -0.4
RFFL-209ENST00000581265 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.54□□□□□ -0.4
RFFL-209ENST00000581265 HELLSQ9NRZ9 838 aa12.54□□□□□ -0.4
RFFL-209ENST00000581265 CYP39A1Q9NYL5 469 aa12.54□□□□□ -0.4
RFFL-209ENST00000581265 ZBTB47Q9UFB7 747 aaPredicted RBP12.54□□□□□ -0.4
RFFL-209ENST00000581265 Q9Y3F1 56 aa12.54□□□□□ -0.4
RFFL-209ENST00000581265 ASTN1O14525 1302 aa12.54□□□□□ -0.4
RFFL-209ENST00000581265 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.53□□□□□ -0.4
RFFL-209ENST00000581265 CABYRO75952 493 aa12.53□□□□□ -0.4
RFFL-209ENST00000581265 FGAP02671 866 aa12.53□□□□□ -0.4
RFFL-209ENST00000581265 ICAM1P05362 532 aa12.53□□□□□ -0.4
RFFL-209ENST00000581265 PDE1AP54750 535 aa12.53□□□□□ -0.4
RFFL-209ENST00000581265 BEX3Q00994 111 aa12.53□□□□□ -0.4
RFFL-209ENST00000581265 PPIGQ13427 754 aaKnown RBP eCLIP12.53□□□□□ -0.4
RFFL-209ENST00000581265 MUM1L1Q5H9M0 696 aa12.53□□□□□ -0.4
RFFL-209ENST00000581265 TMEM240Q5SV17 173 aa12.53□□□□□ -0.4
RFFL-209ENST00000581265 RASIP1Q5U651 963 aa12.53□□□□□ -0.4
RFFL-209ENST00000581265 TAPT1Q6NXT6 567 aa12.53□□□□□ -0.4
RFFL-209ENST00000581265 CCDC174Q6PII3 467 aa12.53□□□□□ -0.4
RFFL-209ENST00000581265 BTNL9Q6UXG8 535 aa12.53□□□□□ -0.4
RFFL-209ENST00000581265 NOL8Q76FK4 1167 aaKnown RBP12.53□□□□□ -0.4
RFFL-209ENST00000581265 TMEM199Q8N511 208 aa12.53□□□□□ -0.4
RFFL-209ENST00000581265 MORC4Q8TE76 937 aa12.53□□□□□ -0.4
RFFL-209ENST00000581265 DCAF4Q8WV16 495 aa12.53□□□□□ -0.4
RFFL-209ENST00000581265 CHMP4CQ96CF2 233 aa12.53□□□□□ -0.4
RFFL-209ENST00000581265 SEZ6LQ9BYH1 1024 aa12.53□□□□□ -0.4
RFFL-209ENST00000581265 TCP11L1Q9NUJ3 509 aa12.53□□□□□ -0.4
RFFL-209ENST00000581265 VCANP13611 3396 aa12.52□□□□□ -0.4
RFFL-209ENST00000581265 TLR3O15455 904 aaKnown RBP12.52□□□□□ -0.41
RFFL-209ENST00000581265 TOP1P11387 765 aaKnown RBP12.52□□□□□ -0.41
RFFL-209ENST00000581265 CSF2RAP15509 400 aa12.52□□□□□ -0.41
RFFL-209ENST00000581265 SMPD1P17405 629 aa12.52□□□□□ -0.41
RFFL-209ENST00000581265 SNAP25P60880 206 aa12.52□□□□□ -0.41
RFFL-209ENST00000581265 HDAC1Q13547 482 aaPredicted RBP12.52□□□□□ -0.41
RFFL-209ENST00000581265 FSCN1Q16658 493 aaKnown RBP12.52□□□□□ -0.41
RFFL-209ENST00000581265 AAK1Q2M2I8 961 aa12.52□□□□□ -0.41
RFFL-209ENST00000581265 MCMDC2Q4G0Z9 681 aa12.52□□□□□ -0.41
RFFL-209ENST00000581265 CXCL17Q6UXB2 119 aa12.52□□□□□ -0.41
RFFL-209ENST00000581265 NECAB3Q96P71 396 aaPredicted RBP12.52□□□□□ -0.41
RFFL-209ENST00000581265 LRFN3Q9BTN0 628 aa12.52□□□□□ -0.41
RFFL-209ENST00000581265 AP5M1Q9H0R1 490 aa12.52□□□□□ -0.41
RFFL-209ENST00000581265 RANBP17Q9H2T7 1088 aaKnown RBP12.52□□□□□ -0.41
RFFL-209ENST00000581265 PDGFCQ9NRA1 345 aa12.52□□□□□ -0.41
RFFL-209ENST00000581265 MSRAQ9UJ68 235 aa12.52□□□□□ -0.41
RFFL-209ENST00000581265 CCPG1Q9ULG6 757 aa12.52□□□□□ -0.41
RFFL-209ENST00000581265 LOC102724159A0A0B4J2E5 919 aa12.51□□□□□ -0.41
RFFL-209ENST00000581265 DYNC1LI2O43237 492 aaPredicted RBP12.51□□□□□ -0.41
RFFL-209ENST00000581265 ZEB2O60315 1214 aa12.51□□□□□ -0.41
RFFL-209ENST00000581265 RRP1P56182 461 aaKnown RBP12.51□□□□□ -0.41
RFFL-209ENST00000581265 PWP2Q15269 919 aaKnown RBP12.51□□□□□ -0.41
RFFL-209ENST00000581265 SKIV2LQ15477 1246 aaKnown RBP12.51□□□□□ -0.41
RFFL-209ENST00000581265 TMEM31Q5JXX7 168 aa12.51□□□□□ -0.41
RFFL-209ENST00000581265 TTBK2Q6IQ55 1244 aa12.51□□□□□ -0.41
RFFL-209ENST00000581265 NSMFQ6X4W1 530 aa12.51□□□□□ -0.41
RFFL-209ENST00000581265 RASGRP2Q7LDG7 609 aa12.51□□□□□ -0.41
RFFL-209ENST00000581265 TLK2Q86UE8 772 aa12.51□□□□□ -0.41
RFFL-209ENST00000581265 ALYREFQ86V81 257 aaKnown RBP12.51□□□□□ -0.41
RFFL-209ENST00000581265 MICALL1Q8N3F8 863 aa12.51□□□□□ -0.41
RFFL-209ENST00000581265 TMEM47Q9BQJ4 181 aa12.51□□□□□ -0.41
RFFL-209ENST00000581265 VTA1Q9NP79 307 aa12.51□□□□□ -0.41
RFFL-209ENST00000581265 GRIN2DO15399 1336 aa12.51□□□□□ -0.41
RFFL-209ENST00000581265 HSPD1P10809 573 aaKnown RBP12.5□□□□□ -0.41
RFFL-209ENST00000581265 CYP2C18P33260 490 aa12.5□□□□□ -0.41
RFFL-209ENST00000581265 SLC16A2P36021 539 aa12.5□□□□□ -0.41
RFFL-209ENST00000581265 ITGA7Q13683 1181 aa12.5□□□□□ -0.41
RFFL-209ENST00000581265 BAATQ14032 418 aaPredicted RBP12.5□□□□□ -0.41
RFFL-209ENST00000581265 CCDC96Q2M329 555 aa12.5□□□□□ -0.41
RFFL-209ENST00000581265 TMEM63BQ5T3F8 832 aa12.5□□□□□ -0.41
RFFL-209ENST00000581265 SYDE2Q5VT97 1194 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms