RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 JAKMIP3Q5VZ66 844 aa12.01□□□□□ -0.49
SS18-217ENST00000580958 RESP18Q5W5W9 173 aa12.01□□□□□ -0.49
SS18-217ENST00000580958 SHC4Q6S5L8 630 aa12.01□□□□□ -0.49
SS18-217ENST00000580958 KRT25Q7Z3Z0 450 aa12.01□□□□□ -0.49
SS18-217ENST00000580958 FMR1NBQ8N0W7 255 aaPredicted RBP12.01□□□□□ -0.49
SS18-217ENST00000580958 REXO1Q8N1G1 1221 aaKnown RBP12.01□□□□□ -0.49
SS18-217ENST00000580958 FEZ1Q99689 392 aa12.01□□□□□ -0.49
SS18-217ENST00000580958 RIC8AQ9NPQ8 531 aa12.01□□□□□ -0.49
SS18-217ENST00000580958 TMEM260Q9NX78 707 aa12.01□□□□□ -0.49
SS18-217ENST00000580958 BIN2Q9UBW5 565 aaPredicted RBP12.01□□□□□ -0.49
SS18-217ENST00000580958 PRR12Q9ULL5 1215 aa12.01□□□□□ -0.49
SS18-217ENST00000580958 FZD1Q9UP38 647 aa12.01□□□□□ -0.49
SS18-217ENST00000580958 MORC2Q9Y6X9 1032 aaPredicted RBP12.01□□□□□ -0.49
SS18-217ENST00000580958 RLFQ13129 1914 aa12□□□□□ -0.49
SS18-217ENST00000580958 FAM237AA0A1B0GTK4 181 aa12□□□□□ -0.49
SS18-217ENST00000580958 POTEJP0CG39 1038 aa12□□□□□ -0.49
SS18-217ENST00000580958 NONOQ15233 471 aaKnown RBP eCLIP12□□□□□ -0.49
SS18-217ENST00000580958 CKAP2LQ8IYA6 745 aa12□□□□□ -0.49
SS18-217ENST00000580958 SCYL3Q8IZE3 742 aa12□□□□□ -0.49
SS18-217ENST00000580958 WRNIP1Q96S55 665 aa12□□□□□ -0.49
SS18-217ENST00000580958 RBSNQ9H1K0 784 aa12□□□□□ -0.49
SS18-217ENST00000580958 GRPEL1Q9HAV7 217 aa12□□□□□ -0.49
SS18-217ENST00000580958 SRPRBQ9Y5M8 271 aaKnown RBP12□□□□□ -0.49
SS18-217ENST00000580958 ADM5C9JUS6 153 aa11.99□□□□□ -0.49
SS18-217ENST00000580958 TAL1P17542 331 aaPredicted RBP11.99□□□□□ -0.49
SS18-217ENST00000580958 MCM7P33993 719 aa11.99□□□□□ -0.49
SS18-217ENST00000580958 MRE11P49959 708 aa11.99□□□□□ -0.49
SS18-217ENST00000580958 STAT2P52630 851 aa11.99□□□□□ -0.49
SS18-217ENST00000580958 ATP2C1P98194 919 aaPredicted RBP11.99□□□□□ -0.49
SS18-217ENST00000580958 PTGDRQ13258 359 aa11.99□□□□□ -0.49
SS18-217ENST00000580958 UBE2SQ16763 222 aa11.99□□□□□ -0.49
SS18-217ENST00000580958 SUPT20HL1Q3ZLR7 823 aa11.99□□□□□ -0.49
SS18-217ENST00000580958 SPECC1Q5M775 1068 aa11.99□□□□□ -0.49
SS18-217ENST00000580958 DPY19L2Q6NUT2 758 aa11.99□□□□□ -0.49
SS18-217ENST00000580958 RBM43Q6ZSC3 357 aaKnown RBP11.99□□□□□ -0.49
SS18-217ENST00000580958 FBXO11Q86XK2 927 aa11.99□□□□□ -0.49
SS18-217ENST00000580958 CHURC1Q8WUH1 139 aa11.99□□□□□ -0.49
SS18-217ENST00000580958 CUL5Q93034 780 aa11.99□□□□□ -0.49
SS18-217ENST00000580958 ZKSCAN4Q969J2 545 aaPredicted RBP11.99□□□□□ -0.49
SS18-217ENST00000580958 DCPSQ96C86 337 aaKnown RBP11.99□□□□□ -0.49
SS18-217ENST00000580958 L3MBTL3Q96JM7 780 aaPredicted RBP11.99□□□□□ -0.49
SS18-217ENST00000580958 FUCA2Q9BTY2 467 aa11.99□□□□□ -0.49
SS18-217ENST00000580958 AMNQ9BXJ7 453 aa11.99□□□□□ -0.49
SS18-217ENST00000580958 HPSEQ9Y251 543 aa11.99□□□□□ -0.49
SS18-217ENST00000580958 PCDHA1Q9Y5I3 950 aa11.99□□□□□ -0.49
SS18-217ENST00000580958 POTEFA5A3E0 1075 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 CTAGE5O15320 804 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 GRIN3BO60391 1043 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 PLA2G6O60733 806 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 ZNF202O95125 648 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 XRCC6P12956 609 aaKnown RBP eCLIP11.98□□□□□ -0.49
SS18-217ENST00000580958 SYKP43405 635 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 MRPL12P52815 198 aaKnown RBP11.98□□□□□ -0.49
SS18-217ENST00000580958 DGKZQ13574 1117 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 PRKG1Q13976 671 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 USH1GQ495M9 461 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 DLK2Q6UY11 383 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 FAM160B2Q86V87 743 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 C4orf32Q8N8J7 132 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 FERMT2Q96AC1 680 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 KIFC2Q96AC6 838 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 KIAA1683Q9H0B3 1180 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 CSRNP2Q9H175 543 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 PSTPIP2Q9H939 334 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 PICK1Q9NRD5 415 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 FBXO28Q9NVF7 368 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 FAM13BQ9NYF5 915 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 FEM1BQ9UK73 627 aa11.98□□□□□ -0.49
SS18-217ENST00000580958 ZC3H4Q9UPT8 1303 aaKnown RBP11.97□□□□□ -0.49
SS18-217ENST00000580958 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.97□□□□□ -0.49
SS18-217ENST00000580958 WDR46O15213 610 aaKnown RBP11.97□□□□□ -0.49
SS18-217ENST00000580958 PTPRAP18433 802 aa11.97□□□□□ -0.49
SS18-217ENST00000580958 EPHX2P34913 555 aa11.97□□□□□ -0.49
SS18-217ENST00000580958 CLK2P49760 499 aaKnown RBP11.97□□□□□ -0.49
SS18-217ENST00000580958 LETM2Q2VYF4 491 aa11.97□□□□□ -0.49
SS18-217ENST00000580958 NOL9Q5SY16 702 aaKnown RBP11.97□□□□□ -0.49
SS18-217ENST00000580958 CCDC174Q6PII3 467 aa11.97□□□□□ -0.49
SS18-217ENST00000580958 USP50Q70EL3 339 aaPredicted RBP11.97□□□□□ -0.49
SS18-217ENST00000580958 NEK8Q86SG6 692 aa11.97□□□□□ -0.49
SS18-217ENST00000580958 SULF1Q8IWU6 871 aa11.97□□□□□ -0.49
SS18-217ENST00000580958 TBCKQ8TEA7 893 aa11.97□□□□□ -0.49
SS18-217ENST00000580958 KLRG1Q96E93 195 aa11.97□□□□□ -0.49
SS18-217ENST00000580958 WDR18Q9BV38 432 aa11.97□□□□□ -0.49
SS18-217ENST00000580958 GLT8D2Q9H1C3 349 aa11.97□□□□□ -0.49
SS18-217ENST00000580958 TMEM60Q9H2L4 133 aa11.97□□□□□ -0.49
SS18-217ENST00000580958 RANBP17Q9H2T7 1088 aaKnown RBP11.97□□□□□ -0.49
SS18-217ENST00000580958 AS3MTQ9HBK9 375 aa11.97□□□□□ -0.49
SS18-217ENST00000580958 VWA3AA6NCI4 1184 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 GLTPD2A6NH11 291 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 USP17L15C9J2P7 530 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 USP17L13C9JLJ4 530 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 USP17L11C9JVI0 530 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 USP17L18D6R9N7 530 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 USP17L22D6RA61 530 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 USP17L17D6RBQ6 530 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 USP17L19D6RCP7 530 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 USP17L20D6RJB6 530 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 USP2O75604 605 aaPredicted RBP11.96□□□□□ -0.49
SS18-217ENST00000580958 CCDC192P0DO97 292 aa11.96□□□□□ -0.49
SS18-217ENST00000580958 USP14P54578 494 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms