RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 CLTBP09497 229 aa17.05■□□□□ 0.32
SMARCE1-216ENST00000580419 ALAS1P13196 640 aa17.05■□□□□ 0.32
SMARCE1-216ENST00000580419 CDK7P50613 346 aa17.05■□□□□ 0.32
SMARCE1-216ENST00000580419 KCNA10Q16322 511 aa17.05■□□□□ 0.32
SMARCE1-216ENST00000580419 IQCA1Q86XH1 822 aa17.05■□□□□ 0.32
SMARCE1-216ENST00000580419 EXOC6Q8TAG9 804 aa17.05■□□□□ 0.32
SMARCE1-216ENST00000580419 GLT1D1Q96MS3 346 aa17.05■□□□□ 0.32
SMARCE1-216ENST00000580419 VTA1Q9NP79 307 aa17.05■□□□□ 0.32
SMARCE1-216ENST00000580419 STARD7Q9NQZ5 370 aa17.05■□□□□ 0.32
SMARCE1-216ENST00000580419 ZHX1Q9UKY1 873 aaPredicted RBP17.05■□□□□ 0.32
SMARCE1-216ENST00000580419 CCPG1Q9ULG6 757 aa17.05■□□□□ 0.32
SMARCE1-216ENST00000580419 GNEQ9Y223 722 aaKnown RBP17.05■□□□□ 0.32
SMARCE1-216ENST00000580419 SOWAHBA6NEL2 793 aa17.04■□□□□ 0.32
SMARCE1-216ENST00000580419 DCDC2CA8MYV0 355 aa17.04■□□□□ 0.32
SMARCE1-216ENST00000580419 CNTN2Q02246 1040 aa17.04■□□□□ 0.32
SMARCE1-216ENST00000580419 B4GALNT3Q6L9W6 998 aa17.04■□□□□ 0.32
SMARCE1-216ENST00000580419 FERMT2Q96AC1 680 aa17.04■□□□□ 0.32
SMARCE1-216ENST00000580419 CNNM2Q9H8M5 875 aa17.04■□□□□ 0.32
SMARCE1-216ENST00000580419 TOMM22Q9NS69 142 aa17.04■□□□□ 0.32
SMARCE1-216ENST00000580419 HOMER2Q9NSB8 354 aa17.04■□□□□ 0.32
SMARCE1-216ENST00000580419 RAD50Q92878 1312 aa17.03■□□□□ 0.32
SMARCE1-216ENST00000580419 CUL9Q8IWT3 2517 aa17.03■□□□□ 0.32
SMARCE1-216ENST00000580419 TRIM43BA6NCK2 446 aa17.03■□□□□ 0.32
SMARCE1-216ENST00000580419 CTAGE5O15320 804 aa17.03■□□□□ 0.32
SMARCE1-216ENST00000580419 TNFAIP2Q03169 654 aa17.03■□□□□ 0.32
SMARCE1-216ENST00000580419 CCDC96Q2M329 555 aa17.03■□□□□ 0.32
SMARCE1-216ENST00000580419 RRP12Q5JTH9 1297 aaKnown RBP17.03■□□□□ 0.32
SMARCE1-216ENST00000580419 TBC1D10CQ8IV04 446 aa17.03■□□□□ 0.32
SMARCE1-216ENST00000580419 DNERQ8NFT8 737 aa17.03■□□□□ 0.32
SMARCE1-216ENST00000580419 TRIM43Q96BQ3 446 aaPredicted RBP17.03■□□□□ 0.32
SMARCE1-216ENST00000580419 ASTN1O14525 1302 aa17.02■□□□□ 0.32
SMARCE1-216ENST00000580419 RBM47A0AV96 593 aaKnown RBP17.02■□□□□ 0.32
SMARCE1-216ENST00000580419 ADCY6O43306 1168 aa17.02■□□□□ 0.32
SMARCE1-216ENST00000580419 ASGR1P07306 291 aa17.02■□□□□ 0.32
SMARCE1-216ENST00000580419 C6orf222P0C671 652 aaPredicted RBP17.02■□□□□ 0.32
SMARCE1-216ENST00000580419 SMAD3P84022 425 aaKnown RBP17.02■□□□□ 0.32
SMARCE1-216ENST00000580419 FAAP100Q0VG06 881 aa17.02■□□□□ 0.32
SMARCE1-216ENST00000580419 IMMTQ16891 758 aaKnown RBP17.02■□□□□ 0.32
SMARCE1-216ENST00000580419 MUM1L1Q5H9M0 696 aa17.02■□□□□ 0.32
SMARCE1-216ENST00000580419 GNASQ5JWF2 1037 aa17.02■□□□□ 0.32
SMARCE1-216ENST00000580419 CWC27Q6UX04 472 aaKnown RBP17.02■□□□□ 0.32
SMARCE1-216ENST00000580419 DEFB123Q8N688 67 aa17.02■□□□□ 0.32
SMARCE1-216ENST00000580419 SLC43A3Q8NBI5 491 aa17.02■□□□□ 0.32
SMARCE1-216ENST00000580419 MPHOSPH6Q99547 160 aaKnown RBP17.02■□□□□ 0.32
SMARCE1-216ENST00000580419 KRT23Q9C075 422 aa17.02■□□□□ 0.32
SMARCE1-216ENST00000580419 MTMR10Q9NXD2 777 aa17.02■□□□□ 0.32
SMARCE1-216ENST00000580419 TBX21Q9UL17 535 aa17.02■□□□□ 0.32
SMARCE1-216ENST00000580419 ISY1Q9ULR0 285 aaKnown RBP17.02■□□□□ 0.32
SMARCE1-216ENST00000580419 STXBP5LQ9Y2K9 1186 aa17.02■□□□□ 0.32
SMARCE1-216ENST00000580419 MYH6P13533 1939 aa17.02■□□□□ 0.31
SMARCE1-216ENST00000580419 TMEM265A0A087WTH1 108 aa17.01■□□□□ 0.31
SMARCE1-216ENST00000580419 A0A0U1RQG5 324 aaPredicted RBP17.01■□□□□ 0.31
SMARCE1-216ENST00000580419 B4DLN1 442 aa17.01■□□□□ 0.31
SMARCE1-216ENST00000580419 ARVCFO00192 962 aa17.01■□□□□ 0.31
SMARCE1-216ENST00000580419 ZEB2O60315 1214 aa17.01■□□□□ 0.31
SMARCE1-216ENST00000580419 MYCNP04198 464 aaPredicted RBP17.01■□□□□ 0.31
SMARCE1-216ENST00000580419 SLC4A3P48751 1232 aa17.01■□□□□ 0.31
SMARCE1-216ENST00000580419 MRPL12P52815 198 aaKnown RBP17.01■□□□□ 0.31
SMARCE1-216ENST00000580419 HAND2P61296 217 aa17.01■□□□□ 0.31
SMARCE1-216ENST00000580419 TAPT1Q6NXT6 567 aa17.01■□□□□ 0.31
SMARCE1-216ENST00000580419 CCDC174Q6PII3 467 aa17.01■□□□□ 0.31
SMARCE1-216ENST00000580419 BADQ92934 168 aa17.01■□□□□ 0.31
SMARCE1-216ENST00000580419 YTHDC1Q96MU7 727 aaKnown RBP17.01■□□□□ 0.31
SMARCE1-216ENST00000580419 TIMP1P01033 207 aa17■□□□□ 0.31
SMARCE1-216ENST00000580419 EDNRBP24530 442 aa17■□□□□ 0.31
SMARCE1-216ENST00000580419 ASPRV1Q53RT3 343 aa17■□□□□ 0.31
SMARCE1-216ENST00000580419 TTBK2Q6IQ55 1244 aa17■□□□□ 0.31
SMARCE1-216ENST00000580419 SH3RF1Q7Z6J0 888 aa17■□□□□ 0.31
SMARCE1-216ENST00000580419 CLEC4DQ8WXI8 215 aa17■□□□□ 0.31
SMARCE1-216ENST00000580419 LENG1Q96BZ8 264 aaPredicted RBP17■□□□□ 0.31
SMARCE1-216ENST00000580419 TMEM39AQ9NV64 488 aa17■□□□□ 0.31
SMARCE1-216ENST00000580419 NEDD4P46934 1319 aa16.99■□□□□ 0.31
SMARCE1-216ENST00000580419 NKRFO15226 690 aaKnown RBP eCLIP16.99■□□□□ 0.31
SMARCE1-216ENST00000580419 RAG1P15918 1043 aa16.99■□□□□ 0.31
SMARCE1-216ENST00000580419 SLC16A2P36021 539 aa16.99■□□□□ 0.31
SMARCE1-216ENST00000580419 ALDH5A1P51649 535 aaPredicted RBP16.99■□□□□ 0.31
SMARCE1-216ENST00000580419 BAATQ14032 418 aaPredicted RBP16.99■□□□□ 0.31
SMARCE1-216ENST00000580419 DUSP28Q4G0W2 176 aa16.99■□□□□ 0.31
SMARCE1-216ENST00000580419 TLK2Q86UE8 772 aa16.99■□□□□ 0.31
SMARCE1-216ENST00000580419 PNMA1Q8ND90 353 aa16.99■□□□□ 0.31
SMARCE1-216ENST00000580419 RUFY2Q8WXA3 655 aa16.99■□□□□ 0.31
SMARCE1-216ENST00000580419 ZSCAN10Q96SZ4 725 aaPredicted RBP16.99■□□□□ 0.31
SMARCE1-216ENST00000580419 AP5M1Q9H0R1 490 aa16.99■□□□□ 0.31
SMARCE1-216ENST00000580419 PRDM5Q9NQX1 630 aaPredicted RBP16.99■□□□□ 0.31
SMARCE1-216ENST00000580419 ZSWIM5Q9P217 1185 aa16.99■□□□□ 0.31
SMARCE1-216ENST00000580419 MYADML2A6NDP7 307 aa16.98■□□□□ 0.31
SMARCE1-216ENST00000580419 PQBP1O60828 265 aaKnown RBP16.98■□□□□ 0.31
SMARCE1-216ENST00000580419 KDM4AO75164 1064 aa16.98■□□□□ 0.31
SMARCE1-216ENST00000580419 CD4P01730 458 aa16.98■□□□□ 0.31
SMARCE1-216ENST00000580419 GHRHRQ02643 423 aa16.98■□□□□ 0.31
SMARCE1-216ENST00000580419 SHHQ15465 462 aa16.98■□□□□ 0.31
SMARCE1-216ENST00000580419 FSCN1Q16658 493 aaKnown RBP16.98■□□□□ 0.31
SMARCE1-216ENST00000580419 TTC22Q5TAA0 569 aa16.98■□□□□ 0.31
SMARCE1-216ENST00000580419 MFSD5Q6N075 450 aa16.98■□□□□ 0.31
SMARCE1-216ENST00000580419 NSMFQ6X4W1 530 aa16.98■□□□□ 0.31
SMARCE1-216ENST00000580419 RASGRP2Q7LDG7 609 aa16.98■□□□□ 0.31
SMARCE1-216ENST00000580419 FAM126BQ8IXS8 530 aa16.98■□□□□ 0.31
SMARCE1-216ENST00000580419 SAMD3Q8N6K7 520 aa16.98■□□□□ 0.31
SMARCE1-216ENST00000580419 ENAHQ8N8S7 591 aaPredicted RBP16.98■□□□□ 0.31
SMARCE1-216ENST00000580419 MAP3K20Q9NYL2 800 aaKnown RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms