RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 MS4A4AQ96JQ5 239 aa17.49■□□□□ 0.39
SS18-206ENST00000577572 RTEL1Q9NZ71 1219 aa17.49■□□□□ 0.39
SS18-206ENST00000577572 PCDHA6Q9UN73 950 aa17.49■□□□□ 0.39
SS18-206ENST00000577572 PCDHA8Q9Y5H6 950 aa17.49■□□□□ 0.39
SS18-206ENST00000577572 TLL2Q9Y6L7 1015 aa17.49■□□□□ 0.39
SS18-206ENST00000577572 TRPM7Q96QT4 1865 aa17.49■□□□□ 0.39
SS18-206ENST00000577572 ZNF536O15090 1300 aa17.48■□□□□ 0.39
SS18-206ENST00000577572 BAZ2BQ9UIF8 2168 aaKnown RBP17.48■□□□□ 0.39
SS18-206ENST00000577572 CCDC194A0A1B0GVG4 234 aa17.48■□□□□ 0.39
SS18-206ENST00000577572 COPB2P35606 906 aa17.48■□□□□ 0.39
SS18-206ENST00000577572 GJA5P36382 358 aa17.48■□□□□ 0.39
SS18-206ENST00000577572 NASPP49321 788 aaPredicted RBP17.48■□□□□ 0.39
SS18-206ENST00000577572 CLK2P49760 499 aaKnown RBP17.48■□□□□ 0.39
SS18-206ENST00000577572 IRX3P78415 501 aaPredicted RBP17.48■□□□□ 0.39
SS18-206ENST00000577572 NR5A1Q13285 461 aa17.48■□□□□ 0.39
SS18-206ENST00000577572 RGMBQ6NW40 437 aa17.48■□□□□ 0.39
SS18-206ENST00000577572 ANKRD23Q86SG2 305 aa17.48■□□□□ 0.39
SS18-206ENST00000577572 REPS2Q8NFH8 660 aa17.48■□□□□ 0.39
SS18-206ENST00000577572 OXER1Q8TDS5 423 aa17.48■□□□□ 0.39
SS18-206ENST00000577572 NAP1L4Q99733 375 aaKnown RBP17.48■□□□□ 0.39
SS18-206ENST00000577572 RCOR1Q9UKL0 485 aa17.48■□□□□ 0.39
SS18-206ENST00000577572 CEP131Q9UPN4 1083 aa17.48■□□□□ 0.39
SS18-206ENST00000577572 MANSC4A6NHS7 340 aaPredicted RBP17.47■□□□□ 0.39
SS18-206ENST00000577572 TMEM88BA6NKF7 163 aa17.47■□□□□ 0.39
SS18-206ENST00000577572 SPDYE16A6NNV3 312 aaPredicted RBP17.47■□□□□ 0.39
SS18-206ENST00000577572 DGKZQ13574 1117 aa17.47■□□□□ 0.39
SS18-206ENST00000577572 TREML2Q5T2D2 321 aa17.47■□□□□ 0.39
SS18-206ENST00000577572 GPAT2Q6NUI2 795 aa17.47■□□□□ 0.39
SS18-206ENST00000577572 KCNG4Q8TDN1 519 aa17.47■□□□□ 0.39
SS18-206ENST00000577572 ATG4CQ96DT6 458 aa17.47■□□□□ 0.39
SS18-206ENST00000577572 TEX13BQ9BXU2 312 aa17.47■□□□□ 0.39
SS18-206ENST00000577572 CCPG1Q9ULG6 757 aa17.47■□□□□ 0.39
SS18-206ENST00000577572 YY1P25490 414 aa17.46■□□□□ 0.39
SS18-206ENST00000577572 ZNF157P51786 506 aaPredicted RBP17.46■□□□□ 0.39
SS18-206ENST00000577572 NONOQ15233 471 aaKnown RBP eCLIP17.46■□□□□ 0.39
SS18-206ENST00000577572 NFKBIBQ15653 356 aa17.46■□□□□ 0.39
SS18-206ENST00000577572 ANO1Q5XXA6 986 aa17.46■□□□□ 0.39
SS18-206ENST00000577572 CCDC174Q6PII3 467 aa17.46■□□□□ 0.39
SS18-206ENST00000577572 ASCC2Q9H1I8 757 aaPredicted RBP17.46■□□□□ 0.39
SS18-206ENST00000577572 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.46■□□□□ 0.39
SS18-206ENST00000577572 ZNF214Q9UL59 606 aaPredicted RBP17.46■□□□□ 0.39
SS18-206ENST00000577572 PTPRFP10586 1907 aa17.46■□□□□ 0.39
SS18-206ENST00000577572 GCOM1H8Y6P7 765 aaPredicted RBP17.45■□□□□ 0.38
SS18-206ENST00000577572 POLR2MP0CAP2 368 aa17.45■□□□□ 0.38
SS18-206ENST00000577572 USH1GQ495M9 461 aa17.45■□□□□ 0.38
SS18-206ENST00000577572 RASAL3Q86YV0 1011 aa17.45■□□□□ 0.38
SS18-206ENST00000577572 JMYQ8N9B5 988 aa17.45■□□□□ 0.38
SS18-206ENST00000577572 SPATA32Q96LK8 384 aa17.45■□□□□ 0.38
SS18-206ENST00000577572 USP28Q96RU2 1077 aa17.45■□□□□ 0.38
SS18-206ENST00000577572 EHMT1Q9H9B1 1298 aa17.45■□□□□ 0.38
SS18-206ENST00000577572 RABGAP1Q9Y3P9 1069 aa17.45■□□□□ 0.38
SS18-206ENST00000577572 CCL15-CCL14A0A0B4J2E2 113 aa17.44■□□□□ 0.38
SS18-206ENST00000577572 MEIS2O14770 477 aa17.44■□□□□ 0.38
SS18-206ENST00000577572 PPP6R2O75170 966 aa17.44■□□□□ 0.38
SS18-206ENST00000577572 SLC10A3P09131 477 aa17.44■□□□□ 0.38
SS18-206ENST00000577572 NCLP19338 710 aaKnown RBP17.44■□□□□ 0.38
SS18-206ENST00000577572 STAT3P40763 770 aa17.44■□□□□ 0.38
SS18-206ENST00000577572 GCLCP48506 637 aaPredicted RBP17.44■□□□□ 0.38
SS18-206ENST00000577572 USP11P51784 963 aa17.44■□□□□ 0.38
SS18-206ENST00000577572 SNAP25P60880 206 aa17.44■□□□□ 0.38
SS18-206ENST00000577572 HERVK_113P62684 666 aa17.44■□□□□ 0.38
SS18-206ENST00000577572 SLC39A14Q15043 492 aa17.44■□□□□ 0.38
SS18-206ENST00000577572 CCL15Q16663 113 aa17.44■□□□□ 0.38
SS18-206ENST00000577572 SKOR2Q2VWA4 1001 aaPredicted RBP17.44■□□□□ 0.38
SS18-206ENST00000577572 FAM173BQ6P4H8 233 aa17.44■□□□□ 0.38
SS18-206ENST00000577572 PIK3AP1Q6ZUJ8 805 aa17.44■□□□□ 0.38
SS18-206ENST00000577572 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.44■□□□□ 0.38
SS18-206ENST00000577572 REM2Q8IYK8 340 aaPredicted RBP17.44■□□□□ 0.38
SS18-206ENST00000577572 ZNF784Q8NCA9 323 aaPredicted RBP17.44■□□□□ 0.38
SS18-206ENST00000577572 LINC00301Q8NCQ3 95 aa17.44■□□□□ 0.38
SS18-206ENST00000577572 CHST13Q8NET6 341 aa17.44■□□□□ 0.38
SS18-206ENST00000577572 LEO1Q8WVC0 666 aaPredicted RBP17.44■□□□□ 0.38
SS18-206ENST00000577572 FBXO40Q9UH90 709 aa17.44■□□□□ 0.38
SS18-206ENST00000577572 CNPY2Q9Y2B0 182 aa17.44■□□□□ 0.38
SS18-206ENST00000577572 SPDYE3A6NKU9 549 aa17.43■□□□□ 0.38
SS18-206ENST00000577572 LAD1O00515 517 aa17.43■□□□□ 0.38
SS18-206ENST00000577572 OPLAHO14841 1288 aa17.43■□□□□ 0.38
SS18-206ENST00000577572 SLC25A27O95847 323 aa17.43■□□□□ 0.38
SS18-206ENST00000577572 GCFC2P16383 781 aaKnown RBP17.43■□□□□ 0.38
SS18-206ENST00000577572 TOB1P50616 345 aaPredicted RBP17.43■□□□□ 0.38
SS18-206ENST00000577572 HSD17B4P51659 736 aa17.43■□□□□ 0.38
SS18-206ENST00000577572 TMEM132BQ14DG7 1078 aa17.43■□□□□ 0.38
SS18-206ENST00000577572 MOXD1Q6UVY6 613 aa17.43■□□□□ 0.38
SS18-206ENST00000577572 RIOX2Q8IUF8 465 aa17.43■□□□□ 0.38
SS18-206ENST00000577572 CLEC4DQ8WXI8 215 aa17.43■□□□□ 0.38
SS18-206ENST00000577572 BRI3BPQ8WY22 251 aa17.43■□□□□ 0.38
SS18-206ENST00000577572 AGBL1Q96MI9 1066 aa17.43■□□□□ 0.38
SS18-206ENST00000577572 P2RX7Q99572 595 aaKnown RBP17.43■□□□□ 0.38
SS18-206ENST00000577572 RAVER2Q9HCJ3 691 aaKnown RBP17.43■□□□□ 0.38
SS18-206ENST00000577572 RLFQ13129 1914 aa17.43■□□□□ 0.38
SS18-206ENST00000577572 UBE2HP62256 183 aa17.42■□□□□ 0.38
SS18-206ENST00000577572 STK38Q15208 465 aa17.42■□□□□ 0.38
SS18-206ENST00000577572 TTC38Q5R3I4 469 aa17.42■□□□□ 0.38
SS18-206ENST00000577572 PPP4R3AQ6IN85 833 aa17.42■□□□□ 0.38
SS18-206ENST00000577572 NEK8Q86SG6 692 aa17.42■□□□□ 0.38
SS18-206ENST00000577572 CPXCR1Q8N123 301 aa17.42■□□□□ 0.38
SS18-206ENST00000577572 PARK7Q99497 189 aaKnown RBP17.42■□□□□ 0.38
SS18-206ENST00000577572 TFIP11Q9UBB9 837 aaKnown RBP17.42■□□□□ 0.38
SS18-206ENST00000577572 BIN2Q9UBW5 565 aaPredicted RBP17.42■□□□□ 0.38
SS18-206ENST00000577572 BTBD19C9JJ37 291 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms