RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 CCDC173Q0VFZ6 552 aa11.34□□□□□ -0.59
SMG6-213ENST00000573166 DHX37Q8IY37 1157 aaKnown RBP11.34□□□□□ -0.59
SMG6-213ENST00000573166 CLIC6Q96NY7 704 aa11.34□□□□□ -0.59
SMG6-213ENST00000573166 RMDN3Q96TC7 470 aa11.34□□□□□ -0.59
SMG6-213ENST00000573166 ZNF577Q9BSK1 485 aa11.34□□□□□ -0.59
SMG6-213ENST00000573166 EHD4Q9H223 541 aa11.34□□□□□ -0.59
SMG6-213ENST00000573166 ALDH8A1Q9H2A2 487 aaPredicted RBP11.34□□□□□ -0.59
SMG6-213ENST00000573166 SEPT11Q9NVA2 429 aaKnown RBP11.34□□□□□ -0.59
SMG6-213ENST00000573166 COL18A1P39060 1754 aa11.34□□□□□ -0.59
SMG6-213ENST00000573166 GAKO14976 1311 aa11.34□□□□□ -0.59
SMG6-213ENST00000573166 LDHDQ86WU2 507 aa11.34□□□□□ -0.59
SMG6-213ENST00000573166 ZFPM1Q8IX07 1006 aa11.34□□□□□ -0.59
SMG6-213ENST00000573166 ZFP91Q96JP5 570 aaPredicted RBP11.34□□□□□ -0.59
SMG6-213ENST00000573166 PPP2R3BQ9Y5P8 575 aa11.34□□□□□ -0.59
SMG6-213ENST00000573166 GLI3P10071 1580 aa11.34□□□□□ -0.59
SMG6-213ENST00000573166 CCL15-CCL14A0A0B4J2E2 113 aa11.34□□□□□ -0.59
SMG6-213ENST00000573166 RHBDL3P58872 404 aa11.34□□□□□ -0.59
SMG6-213ENST00000573166 CCL15Q16663 113 aa11.34□□□□□ -0.59
SMG6-213ENST00000573166 HERC4Q5GLZ8 1057 aaPredicted RBP11.34□□□□□ -0.59
SMG6-213ENST00000573166 USP50Q70EL3 339 aaPredicted RBP11.34□□□□□ -0.59
SMG6-213ENST00000573166 CACNA2D4Q7Z3S7 1137 aa11.34□□□□□ -0.59
SMG6-213ENST00000573166 FAM114A1Q8IWE2 563 aa11.34□□□□□ -0.59
SMG6-213ENST00000573166 USP25Q9UHP3 1055 aa11.34□□□□□ -0.59
SMG6-213ENST00000573166 KLRG2A4D1S0 409 aaPredicted RBP11.33□□□□□ -0.59
SMG6-213ENST00000573166 YDJCA8MPS7 323 aa11.33□□□□□ -0.59
SMG6-213ENST00000573166 ECE1P42892 770 aa11.33□□□□□ -0.59
SMG6-213ENST00000573166 FAM47CQ5HY64 1035 aa11.33□□□□□ -0.59
SMG6-213ENST00000573166 IFT74Q96LB3 600 aa11.33□□□□□ -0.59
SMG6-213ENST00000573166 MMRN2Q9H8L6 949 aa11.33□□□□□ -0.59
SMG6-213ENST00000573166 SH3GLB2Q9NR46 395 aa11.33□□□□□ -0.59
SMG6-213ENST00000573166 STK36Q9NRP7 1315 aa11.33□□□□□ -0.6
SMG6-213ENST00000573166 SMTNP53814 917 aa11.33□□□□□ -0.6
SMG6-213ENST00000573166 TYRO3Q06418 890 aa11.33□□□□□ -0.6
SMG6-213ENST00000573166 ODF2Q5BJF6 829 aa11.33□□□□□ -0.6
SMG6-213ENST00000573166 UTP14CQ5TAP6 766 aaKnown RBP11.33□□□□□ -0.6
SMG6-213ENST00000573166 FKBP1CQ5VVH2 108 aa11.33□□□□□ -0.6
SMG6-213ENST00000573166 ERO1BQ86YB8 467 aa11.33□□□□□ -0.6
SMG6-213ENST00000573166 CCAR2Q8N163 923 aaKnown RBP11.33□□□□□ -0.6
SMG6-213ENST00000573166 CDHR1Q96JP9 859 aa11.33□□□□□ -0.6
SMG6-213ENST00000573166 SPZ1Q9BXG8 430 aa11.33□□□□□ -0.6
SMG6-213ENST00000573166 FTOQ9C0B1 505 aaKnown RBP eCLIP11.33□□□□□ -0.6
SMG6-213ENST00000573166 PCDHA7Q9UN72 937 aa11.33□□□□□ -0.6
SMG6-213ENST00000573166 N4BP3O15049 544 aa11.33□□□□□ -0.6
SMG6-213ENST00000573166 SLC39A14Q15043 492 aa11.33□□□□□ -0.6
SMG6-213ENST00000573166 SLC51AQ86UW1 340 aa11.33□□□□□ -0.6
SMG6-213ENST00000573166 TTC12Q9H892 705 aaPredicted RBP11.33□□□□□ -0.6
SMG6-213ENST00000573166 TRPC6Q9Y210 931 aa11.33□□□□□ -0.6
SMG6-213ENST00000573166 NFKBIEO00221 500 aa11.33□□□□□ -0.6
SMG6-213ENST00000573166 MYCP01106 439 aaPredicted RBP11.33□□□□□ -0.6
SMG6-213ENST00000573166 LRSAM1Q6UWE0 723 aa11.33□□□□□ -0.6
SMG6-213ENST00000573166 OTUD6AQ7L8S5 288 aa11.33□□□□□ -0.6
SMG6-213ENST00000573166 BARHL2Q9NY43 387 aa11.33□□□□□ -0.6
SMG6-213ENST00000573166 PRR12Q9ULL5 1215 aa11.33□□□□□ -0.6
SMG6-213ENST00000573166 MAPK8IP1Q9UQF2 711 aa11.33□□□□□ -0.6
SMG6-213ENST00000573166 CCND2P30279 289 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 ZSCAN30Q86W11 494 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 CCDC150Q8NCX0 1101 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 TEX13BQ9BXU2 312 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 ACAD9Q9H845 621 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 GINM1Q9NU53 330 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 PCDHA6Q9UN73 950 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 RABGAP1Q9Y3P9 1069 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 PCDHA8Q9Y5H6 950 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 ABCB11O95342 1321 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 KRT13P13646 458 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 PFKFB1P16118 471 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 DNM2P50570 870 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 AP3B2Q13367 1082 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 ENOX2Q16206 610 aaKnown RBP11.32□□□□□ -0.6
SMG6-213ENST00000573166 AOPEPQ8N6M6 819 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 ZNF397Q8NF99 534 aaPredicted RBP11.32□□□□□ -0.6
SMG6-213ENST00000573166 TRPM4Q8TD43 1214 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 CPLX3Q8WVH0 158 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 GTPBP4Q9BZE4 634 aaKnown RBP11.32□□□□□ -0.6
SMG6-213ENST00000573166 FBXO28Q9NVF7 368 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 KDM3AQ9Y4C1 1321 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 CETPP11597 493 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 USP37Q86T82 979 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 ZNF830Q96NB3 372 aaPredicted RBP11.32□□□□□ -0.6
SMG6-213ENST00000573166 FAM198AQ9UFP1 575 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 SERTAD1Q9UHV2 236 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 PCDHB6Q9Y5E3 794 aa11.32□□□□□ -0.6
SMG6-213ENST00000573166 AFDNP55196 1824 aaKnown RBP11.32□□□□□ -0.6
SMG6-213ENST00000573166 XIRP1Q702N8 1843 aaKnown RBP11.32□□□□□ -0.6
SMG6-213ENST00000573166 HARSP12081 509 aaKnown RBP11.31□□□□□ -0.6
SMG6-213ENST00000573166 GUCY1A2P33402 732 aa11.31□□□□□ -0.6
SMG6-213ENST00000573166 SHMT1P34896 483 aa11.31□□□□□ -0.6
SMG6-213ENST00000573166 TROAPQ12815 778 aa11.31□□□□□ -0.6
SMG6-213ENST00000573166 XKR9Q5GH70 373 aa11.31□□□□□ -0.6
SMG6-213ENST00000573166 FAM200AQ8TCP9 573 aa11.31□□□□□ -0.6
SMG6-213ENST00000573166 FAM212AQ96EL1 285 aa11.31□□□□□ -0.6
SMG6-213ENST00000573166 LUC7LQ9NQ29 371 aaKnown RBP11.31□□□□□ -0.6
SMG6-213ENST00000573166 COL22A1Q8NFW1 1626 aaPredicted RBP11.31□□□□□ -0.6
SMG6-213ENST00000573166 MYCT1Q8N699 235 aa11.31□□□□□ -0.6
SMG6-213ENST00000573166 OXER1Q8TDS5 423 aa11.31□□□□□ -0.6
SMG6-213ENST00000573166 NSUN6Q8TEA1 469 aaKnown RBP11.31□□□□□ -0.6
SMG6-213ENST00000573166 LMBRD1Q9NUN5 540 aa11.31□□□□□ -0.6
SMG6-213ENST00000573166 POLR3EQ9NVU0 708 aa11.31□□□□□ -0.6
SMG6-213ENST00000573166 TBC1D7Q9P0N9 293 aa11.31□□□□□ -0.6
SMG6-213ENST00000573166 A0A0U1RQG5 324 aaPredicted RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms