RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 MCMBPQ9BTE3 642 aa6.35□□□□□ -1.39
NUP88-202ENST00000570937 KRTAP4-9Q9BYQ8 210 aa6.35□□□□□ -1.39
NUP88-202ENST00000570937 SUGT1Q9Y2Z0 365 aa6.35□□□□□ -1.39
NUP88-202ENST00000570937 EMC9Q9Y3B6 208 aa6.35□□□□□ -1.39
NUP88-202ENST00000570937 PRDM2Q13029 1718 aa6.35□□□□□ -1.39
NUP88-202ENST00000570937 KLF4O43474 513 aa6.34□□□□□ -1.39
NUP88-202ENST00000570937 VAMP4O75379 141 aa6.34□□□□□ -1.39
NUP88-202ENST00000570937 PNLIPP16233 465 aa6.34□□□□□ -1.39
NUP88-202ENST00000570937 EEF1DP3Q658K8 133 aa6.34□□□□□ -1.39
NUP88-202ENST00000570937 POMZP3Q6PJE2 187 aa6.34□□□□□ -1.39
NUP88-202ENST00000570937 CRACR2BQ8N4Y2 399 aaPredicted RBP6.34□□□□□ -1.39
NUP88-202ENST00000570937 NAT16Q8N8M0 369 aa6.34□□□□□ -1.39
NUP88-202ENST00000570937 FBXO15Q8NCQ5 510 aaPredicted RBP6.34□□□□□ -1.39
NUP88-202ENST00000570937 BVESQ8NE79 360 aa6.34□□□□□ -1.39
NUP88-202ENST00000570937 MICAL1Q8TDZ2 1067 aa6.34□□□□□ -1.39
NUP88-202ENST00000570937 PTCHD1Q96NR3 888 aa6.34□□□□□ -1.39
NUP88-202ENST00000570937 JMJD8Q96S16 334 aa6.34□□□□□ -1.39
NUP88-202ENST00000570937 NSUN3Q9H649 340 aaKnown RBP6.34□□□□□ -1.39
NUP88-202ENST00000570937 ACSL6Q9UKU0 697 aa6.34□□□□□ -1.39
NUP88-202ENST00000570937 AKT3Q9Y243 479 aa6.34□□□□□ -1.39
NUP88-202ENST00000570937 TAF6LQ9Y6J9 622 aa6.34□□□□□ -1.39
NUP88-202ENST00000570937 URB2Q14146 1524 aaKnown RBP6.34□□□□□ -1.39
NUP88-202ENST00000570937 B2RBV5 119 aa6.33□□□□□ -1.4
NUP88-202ENST00000570937 DDAH1O94760 285 aa6.33□□□□□ -1.4
NUP88-202ENST00000570937 C8AP07357 584 aa6.33□□□□□ -1.4
NUP88-202ENST00000570937 AMPD2Q01433 879 aa6.33□□□□□ -1.4
NUP88-202ENST00000570937 ZNF648Q5T619 568 aaPredicted RBP6.33□□□□□ -1.4
NUP88-202ENST00000570937 ANKS3Q6ZW76 656 aa6.33□□□□□ -1.4
NUP88-202ENST00000570937 TRIM59Q8IWR1 403 aa6.33□□□□□ -1.4
NUP88-202ENST00000570937 HNRNPLLQ8WVV9 542 aaKnown RBP6.33□□□□□ -1.4
NUP88-202ENST00000570937 MRGPRX3Q96LB0 322 aa6.33□□□□□ -1.4
NUP88-202ENST00000570937 DIRC2Q96SL1 478 aa6.33□□□□□ -1.4
NUP88-202ENST00000570937 EPB41L4BQ9H329 900 aa6.33□□□□□ -1.4
NUP88-202ENST00000570937 DCP1AQ9NPI6 582 aaPredicted RBP6.33□□□□□ -1.4
NUP88-202ENST00000570937 BACE2Q9Y5Z0 518 aa6.33□□□□□ -1.4
NUP88-202ENST00000570937 HRKO00198 91 aa6.32□□□□□ -1.4
NUP88-202ENST00000570937 SUSD5O60279 629 aa6.32□□□□□ -1.4
NUP88-202ENST00000570937 PEX10O60683 326 aa6.32□□□□□ -1.4
NUP88-202ENST00000570937 GJB6O95452 261 aa6.32□□□□□ -1.4
NUP88-202ENST00000570937 TBC1D8O95759 1140 aa6.32□□□□□ -1.4
NUP88-202ENST00000570937 GALK1P51570 392 aa6.32□□□□□ -1.4
NUP88-202ENST00000570937 ERVFRD-1P60508 538 aa6.32□□□□□ -1.4
NUP88-202ENST00000570937 LAPTM5Q13571 262 aa6.32□□□□□ -1.4
NUP88-202ENST00000570937 MRM1Q6IN84 353 aaKnown RBP6.32□□□□□ -1.4
NUP88-202ENST00000570937 NLGN2Q8NFZ4 835 aa6.32□□□□□ -1.4
NUP88-202ENST00000570937 SLC38A3Q99624 504 aa6.32□□□□□ -1.4
NUP88-202ENST00000570937 EPN3Q9H201 632 aa6.32□□□□□ -1.4
NUP88-202ENST00000570937 ZNF552Q9H707 407 aaPredicted RBP6.32□□□□□ -1.4
NUP88-202ENST00000570937 R3HCC1Q9Y3T6 440 aaKnown RBP6.32□□□□□ -1.4
NUP88-202ENST00000570937 TOPBP1Q92547 1522 aa6.31□□□□□ -1.4
NUP88-202ENST00000570937 IFT140Q96RY7 1462 aa6.31□□□□□ -1.4
NUP88-202ENST00000570937 OR14I1A6ND48 311 aa6.31□□□□□ -1.4
NUP88-202ENST00000570937 C2orf71A6NGG8 1288 aa6.31□□□□□ -1.4
NUP88-202ENST00000570937 STXBP3O00186 592 aa6.31□□□□□ -1.4
NUP88-202ENST00000570937 NOP56O00567 594 aaKnown RBP6.31□□□□□ -1.4
NUP88-202ENST00000570937 CORO7P57737 925 aa6.31□□□□□ -1.4
NUP88-202ENST00000570937 DDR2Q16832 855 aa6.31□□□□□ -1.4
NUP88-202ENST00000570937 DPY19L1Q2PZI1 675 aa6.31□□□□□ -1.4
NUP88-202ENST00000570937 KSR1Q8IVT5 923 aa6.31□□□□□ -1.4
NUP88-202ENST00000570937 CELF2-AS1Q8N7Q2 184 aa6.31□□□□□ -1.4
NUP88-202ENST00000570937 COPS5Q92905 334 aa6.31□□□□□ -1.4
NUP88-202ENST00000570937 SLC26A8Q96RN1 970 aa6.31□□□□□ -1.4
NUP88-202ENST00000570937 IMPACTQ9P2X3 320 aa6.31□□□□□ -1.4
NUP88-202ENST00000570937 KCNH1O95259 989 aa6.3□□□□□ -1.4
NUP88-202ENST00000570937 TSPAN15O95858 294 aa6.3□□□□□ -1.4
NUP88-202ENST00000570937 PRKCAP17252 672 aa6.3□□□□□ -1.4
NUP88-202ENST00000570937 PDE6BP35913 854 aa6.3□□□□□ -1.4
NUP88-202ENST00000570937 ARL4AP40617 200 aa6.3□□□□□ -1.4
NUP88-202ENST00000570937 SEPHS1P49903 392 aa6.3□□□□□ -1.4
NUP88-202ENST00000570937 MVKQ03426 396 aa6.3□□□□□ -1.4
NUP88-202ENST00000570937 RAB33AQ14088 237 aa6.3□□□□□ -1.4
NUP88-202ENST00000570937 KIR3DS1Q14943 382 aa6.3□□□□□ -1.4
NUP88-202ENST00000570937 ADGRF1Q5T601 910 aa6.3□□□□□ -1.4
NUP88-202ENST00000570937 GTF2IRD2BQ6EKJ0 949 aa6.3□□□□□ -1.4
NUP88-202ENST00000570937 EEPD1Q7L9B9 569 aa6.3□□□□□ -1.4
NUP88-202ENST00000570937 GTF2IRD2Q86UP8 949 aa6.3□□□□□ -1.4
NUP88-202ENST00000570937 JAMLQ86YT9 394 aa6.3□□□□□ -1.4
NUP88-202ENST00000570937 SIRT2Q8IXJ6 389 aa6.3□□□□□ -1.4
NUP88-202ENST00000570937 NUP43Q8NFH3 380 aa6.3□□□□□ -1.4
NUP88-202ENST00000570937 PPP1R16BQ96T49 567 aa6.3□□□□□ -1.4
NUP88-202ENST00000570937 TNFRSF12AQ9NP84 129 aa6.3□□□□□ -1.4
NUP88-202ENST00000570937 DNMBPQ6XZF7 1577 aa6.3□□□□□ -1.4
NUP88-202ENST00000570937 TRBV23OR9-2A0A075B6M9 112 aa6.29□□□□□ -1.4
NUP88-202ENST00000570937 STK10O94804 968 aaKnown RBP6.29□□□□□ -1.4
NUP88-202ENST00000570937 KRT1P04264 644 aa6.29□□□□□ -1.4
NUP88-202ENST00000570937 CAPNS1P04632 268 aa6.29□□□□□ -1.4
NUP88-202ENST00000570937 ITGAVP06756 1048 aa6.29□□□□□ -1.4
NUP88-202ENST00000570937 MED14OSP0DP75 135 aa6.29□□□□□ -1.4
NUP88-202ENST00000570937 L1CAMP32004 1257 aa6.29□□□□□ -1.4
NUP88-202ENST00000570937 YBX1P67809 324 aaKnown RBP6.29□□□□□ -1.4
NUP88-202ENST00000570937 RBM10P98175 930 aaKnown RBP6.29□□□□□ -1.4
NUP88-202ENST00000570937 CYP4F8P98187 520 aa6.29□□□□□ -1.4
NUP88-202ENST00000570937 SYDE1Q6ZW31 735 aaPredicted RBP6.29□□□□□ -1.4
NUP88-202ENST00000570937 ZNF227Q86WZ6 799 aa6.29□□□□□ -1.4
NUP88-202ENST00000570937 ARMC5Q96C12 935 aa6.29□□□□□ -1.4
NUP88-202ENST00000570937 KRTAP4-2Q9BYR5 136 aa6.29□□□□□ -1.4
NUP88-202ENST00000570937 TANGO6Q9C0B7 1094 aa6.29□□□□□ -1.4
NUP88-202ENST00000570937 NKX2-4Q9H2Z4 354 aa6.29□□□□□ -1.4
NUP88-202ENST00000570937 CYP26B1Q9NR63 512 aa6.29□□□□□ -1.4
NUP88-202ENST00000570937 MYOCOSA0A1B0GUC4 107 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms