RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 LMTK2Q8IWU2 1503 aa16.9■□□□□ 0.3
CIITA-204ENST00000570546 CCDC144BQ3MJ40 725 aa16.89■□□□□ 0.3
CIITA-204ENST00000570546 TTLL11Q8NHH1 800 aa16.89■□□□□ 0.3
CIITA-204ENST00000570546 TXNDC16Q9P2K2 825 aa16.89■□□□□ 0.3
CIITA-204ENST00000570546 COMMD10Q9Y6G5 202 aa16.89■□□□□ 0.3
CIITA-204ENST00000570546 MYL1P05976 194 aa16.89■□□□□ 0.29
CIITA-204ENST00000570546 ERVV-1B6SEH8 477 aa16.89■□□□□ 0.29
CIITA-204ENST00000570546 USPL1Q5W0Q7 1092 aa16.89■□□□□ 0.29
CIITA-204ENST00000570546 THAP9Q9H5L6 903 aa16.89■□□□□ 0.29
CIITA-204ENST00000570546 TRPC3Q13507 836 aa16.89■□□□□ 0.29
CIITA-204ENST00000570546 KIFC2Q96AC6 838 aa16.89■□□□□ 0.29
CIITA-204ENST00000570546 NEDD4P46934 1319 aa16.89■□□□□ 0.29
CIITA-204ENST00000570546 RGS16O15492 202 aaPredicted RBP16.89■□□□□ 0.29
CIITA-204ENST00000570546 GUCY2DQ02846 1103 aa16.89■□□□□ 0.29
CIITA-204ENST00000570546 BCAS4Q8TDM0 211 aa16.89■□□□□ 0.29
CIITA-204ENST00000570546 MAIP1Q8WWC4 291 aa16.89■□□□□ 0.29
CIITA-204ENST00000570546 METTL14Q9HCE5 456 aaKnown RBP16.89■□□□□ 0.29
CIITA-204ENST00000570546 CDC25AP30304 524 aa16.88■□□□□ 0.29
CIITA-204ENST00000570546 EHHADHQ08426 723 aa16.88■□□□□ 0.29
CIITA-204ENST00000570546 CYB5R4Q7L1T6 521 aa16.88■□□□□ 0.29
CIITA-204ENST00000570546 DHX40Q8IX18 779 aaKnown RBP16.88■□□□□ 0.29
CIITA-204ENST00000570546 PPRC1Q5VV67 1664 aaKnown RBP16.88■□□□□ 0.29
CIITA-204ENST00000570546 CYP2D7A0A087X1C5 515 aa16.88■□□□□ 0.29
CIITA-204ENST00000570546 MIER3Q7Z3K6 550 aa16.88■□□□□ 0.29
CIITA-204ENST00000570546 CPXCR1Q8N123 301 aa16.88■□□□□ 0.29
CIITA-204ENST00000570546 STIM2Q9P246 746 aa16.88■□□□□ 0.29
CIITA-204ENST00000570546 KIAA1024Q9UPX6 916 aa16.88■□□□□ 0.29
CIITA-204ENST00000570546 CCDC151A5D8V7 595 aa16.88■□□□□ 0.29
CIITA-204ENST00000570546 NAA25Q14CX7 972 aa16.88■□□□□ 0.29
CIITA-204ENST00000570546 ERFEQ4G0M1 354 aa16.88■□□□□ 0.29
CIITA-204ENST00000570546 DPH5Q9H2P9 285 aa16.88■□□□□ 0.29
CIITA-204ENST00000570546 WDR19Q8NEZ3 1342 aa16.88■□□□□ 0.29
CIITA-204ENST00000570546 H2AFZP0C0S5 128 aa16.88■□□□□ 0.29
CIITA-204ENST00000570546 H2AFVQ71UI9 128 aa16.88■□□□□ 0.29
CIITA-204ENST00000570546 MB21D2Q8IYB1 491 aaPredicted RBP16.88■□□□□ 0.29
CIITA-204ENST00000570546 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.88■□□□□ 0.29
CIITA-204ENST00000570546 IRX3P78415 501 aaPredicted RBP16.87■□□□□ 0.29
CIITA-204ENST00000570546 APBA1Q02410 837 aa16.87■□□□□ 0.29
CIITA-204ENST00000570546 SF3A3Q12874 501 aaKnown RBP eCLIP16.87■□□□□ 0.29
CIITA-204ENST00000570546 PPP2R5EQ16537 467 aa16.87■□□□□ 0.29
CIITA-204ENST00000570546 TCP11X2Q5H9J9 407 aa16.87■□□□□ 0.29
CIITA-204ENST00000570546 COL4A3BPQ9Y5P4 624 aa16.87■□□□□ 0.29
CIITA-204ENST00000570546 USP42Q9H9J4 1324 aaKnown RBP16.87■□□□□ 0.29
CIITA-204ENST00000570546 BUB1BO60566 1050 aaPredicted RBP16.87■□□□□ 0.29
CIITA-204ENST00000570546 ZMYND10O75800 440 aa16.87■□□□□ 0.29
CIITA-204ENST00000570546 MAN2A1Q16706 1144 aa16.87■□□□□ 0.29
CIITA-204ENST00000570546 KRT12Q99456 494 aa16.87■□□□□ 0.29
CIITA-204ENST00000570546 FAN1Q9Y2M0 1017 aa16.87■□□□□ 0.29
CIITA-204ENST00000570546 HGSO14964 777 aaPredicted RBP16.87■□□□□ 0.29
CIITA-204ENST00000570546 CYP27B1O15528 508 aa16.87■□□□□ 0.29
CIITA-204ENST00000570546 MFAP3LO75121 409 aa16.87■□□□□ 0.29
CIITA-204ENST00000570546 C2orf54Q08AI8 447 aa16.87■□□□□ 0.29
CIITA-204ENST00000570546 TOGARAM2Q6ZUX3 1019 aa16.87■□□□□ 0.29
CIITA-204ENST00000570546 STAG1Q8WVM7 1258 aa16.87■□□□□ 0.29
CIITA-204ENST00000570546 NHEJ1Q9H9Q4 299 aaPredicted RBP16.87■□□□□ 0.29
CIITA-204ENST00000570546 STK36Q9NRP7 1315 aa16.87■□□□□ 0.29
CIITA-204ENST00000570546 MYO3AQ8NEV4 1616 aa16.87■□□□□ 0.29
CIITA-204ENST00000570546 NDUFA10O95299 355 aa16.87■□□□□ 0.29
CIITA-204ENST00000570546 FBXO11Q86XK2 927 aa16.87■□□□□ 0.29
CIITA-204ENST00000570546 TBCKQ8TEA7 893 aa16.87■□□□□ 0.29
CIITA-204ENST00000570546 CAPN7Q9Y6W3 813 aa16.87■□□□□ 0.29
CIITA-204ENST00000570546 FAM169AQ9Y6X4 670 aa16.87■□□□□ 0.29
CIITA-204ENST00000570546 KRT31Q15323 416 aa16.86■□□□□ 0.29
CIITA-204ENST00000570546 EXOC3L4Q17RC7 722 aa16.86■□□□□ 0.29
CIITA-204ENST00000570546 TSGA10IPQ3SY00 556 aa16.86■□□□□ 0.29
CIITA-204ENST00000570546 RNF40O75150 1001 aa16.86■□□□□ 0.29
CIITA-204ENST00000570546 PTPREP23469 700 aa16.86■□□□□ 0.29
CIITA-204ENST00000570546 SCNN1DP51172 638 aa16.86■□□□□ 0.29
CIITA-204ENST00000570546 LRRC41Q15345 812 aa16.86■□□□□ 0.29
CIITA-204ENST00000570546 ASPRV1Q53RT3 343 aa16.86■□□□□ 0.29
CIITA-204ENST00000570546 DCUN1D2Q6PH85 259 aa16.86■□□□□ 0.29
CIITA-204ENST00000570546 OSBPL5Q9H0X9 879 aaPredicted RBP16.86■□□□□ 0.29
CIITA-204ENST00000570546 ARHGEF40Q8TER5 1519 aa16.86■□□□□ 0.29
CIITA-204ENST00000570546 CAMSAP1Q5T5Y3 1602 aa16.86■□□□□ 0.29
CIITA-204ENST00000570546 TMEM232C9JQI7 657 aa16.86■□□□□ 0.29
CIITA-204ENST00000570546 PLEKHA8P1O95397 391 aa16.86■□□□□ 0.29
CIITA-204ENST00000570546 KMT5BQ4FZB7 885 aa16.86■□□□□ 0.29
CIITA-204ENST00000570546 HHATQ5VTY9 493 aa16.86■□□□□ 0.29
CIITA-204ENST00000570546 PNMA8AQ86V59 439 aaPredicted RBP16.86■□□□□ 0.29
CIITA-204ENST00000570546 SPATS2Q86XZ4 545 aaKnown RBP16.86■□□□□ 0.29
CIITA-204ENST00000570546 STMN2Q93045 179 aa16.86■□□□□ 0.29
CIITA-204ENST00000570546 ZBED4O75132 1171 aa16.86■□□□□ 0.29
CIITA-204ENST00000570546 GAS8O95995 478 aa16.86■□□□□ 0.29
CIITA-204ENST00000570546 ALDH1B1P30837 517 aa16.86■□□□□ 0.29
CIITA-204ENST00000570546 PIGBQ92521 554 aa16.86■□□□□ 0.29
CIITA-204ENST00000570546 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.86■□□□□ 0.29
CIITA-204ENST00000570546 CERKLQ49MI3 558 aaPredicted RBP16.85■□□□□ 0.29
CIITA-204ENST00000570546 VSIG1Q86XK7 387 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 CCDC170Q8IYT3 715 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 MGARPQ8TDB4 240 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 PICK1Q9NRD5 415 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 H0YIN7 160 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 XDHP47989 1333 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 ZBED6P86452 979 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 TTC19Q6DKK2 380 aaPredicted RBP16.85■□□□□ 0.29
CIITA-204ENST00000570546 PPFIBP2Q8ND30 876 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 CHURC1Q8WUH1 139 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 IWS1Q96ST2 819 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 RIC8AQ9NPQ8 531 aa16.85■□□□□ 0.29
CIITA-204ENST00000570546 BZW2Q9Y6E2 419 aaKnown RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms