RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 LZTS2Q9BRK4 669 aa11.19□□□□□ -0.62
VPS53-206ENST00000570359 FAM198AQ9UFP1 575 aa11.19□□□□□ -0.62
VPS53-206ENST00000570359 N4BP3O15049 544 aa11.18□□□□□ -0.62
VPS53-206ENST00000570359 IDEP14735 1019 aa11.18□□□□□ -0.62
VPS53-206ENST00000570359 PMS1P54277 932 aaKnown RBP11.18□□□□□ -0.62
VPS53-206ENST00000570359 ZNF543Q08ER8 600 aa11.18□□□□□ -0.62
VPS53-206ENST00000570359 PAK1Q13153 545 aa11.18□□□□□ -0.62
VPS53-206ENST00000570359 DACT2Q5SW24 774 aa11.18□□□□□ -0.62
VPS53-206ENST00000570359 SPATA1Q5VX52 437 aa11.18□□□□□ -0.62
VPS53-206ENST00000570359 SPECC1LQ69YQ0 1117 aa11.18□□□□□ -0.62
VPS53-206ENST00000570359 TOGARAM2Q6ZUX3 1019 aa11.18□□□□□ -0.62
VPS53-206ENST00000570359 IGSF22Q8N9C0 903 aa11.18□□□□□ -0.62
VPS53-206ENST00000570359 TRIML1Q8N9V2 468 aa11.18□□□□□ -0.62
VPS53-206ENST00000570359 CDK5RAP3Q96JB5 506 aa11.18□□□□□ -0.62
VPS53-206ENST00000570359 PRMT6Q96LA8 375 aaPredicted RBP11.18□□□□□ -0.62
VPS53-206ENST00000570359 DNAI1Q9UI46 699 aa11.18□□□□□ -0.62
VPS53-206ENST00000570359 GH2P01242 217 aa11.18□□□□□ -0.62
VPS53-206ENST00000570359 FCER1AP12319 257 aa11.18□□□□□ -0.62
VPS53-206ENST00000570359 ZNF18P17022 549 aa11.18□□□□□ -0.62
VPS53-206ENST00000570359 CACNB1Q02641 598 aaPredicted RBP11.18□□□□□ -0.62
VPS53-206ENST00000570359 ICA1Q05084 483 aa11.18□□□□□ -0.62
VPS53-206ENST00000570359 TMED8Q6PL24 325 aaPredicted RBP11.18□□□□□ -0.62
VPS53-206ENST00000570359 PODNQ7Z5L7 613 aa11.18□□□□□ -0.62
VPS53-206ENST00000570359 SPATA20Q8TB22 786 aa11.18□□□□□ -0.62
VPS53-206ENST00000570359 TRIM47Q96LD4 638 aa11.18□□□□□ -0.62
VPS53-206ENST00000570359 STK32BQ9NY57 414 aa11.18□□□□□ -0.62
VPS53-206ENST00000570359 SOWAHDA6NJG2 315 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 JAG1P78504 1218 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 RBL2Q08999 1139 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 SLC15A2Q16348 729 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 ASPRV1Q53RT3 343 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 ARL6IP4Q66PJ3 421 aaKnown RBP11.17□□□□□ -0.62
VPS53-206ENST00000570359 MIGA2Q7L4E1 593 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 PPFIBP1Q86W92 1011 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 CDAN1Q8IWY9 1227 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 ZNF710Q8N1W2 664 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 CSRNP1Q96S65 589 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 BAG1Q99933 345 aaPredicted RBP11.17□□□□□ -0.62
VPS53-206ENST00000570359 A0A0U1RQJ8 604 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 YDJCA8MPS7 323 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 PDE4DQ08499 809 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 MCM6Q14566 821 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 KRT31Q15323 416 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 SLFN13Q68D06 897 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 FLAD1Q8NFF5 587 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 ATRIPQ8WXE1 791 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 NUDT12Q9BQG2 462 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 SLC39A2Q9NP94 309 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 TBC1D7Q9P0N9 293 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 LRWD1Q9UFC0 647 aa11.17□□□□□ -0.62
VPS53-206ENST00000570359 ERCC5P28715 1186 aaPredicted RBP11.16□□□□□ -0.62
VPS53-206ENST00000570359 QRICH1Q2TAL8 776 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 RBM26Q5T8P6 1007 aaKnown RBP11.16□□□□□ -0.62
VPS53-206ENST00000570359 POTEAQ6S8J7 498 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 HHIPL2Q6UWX4 724 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 SLC30A10Q6XR72 485 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 LARGE2Q8N3Y3 721 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 ZHX3Q9H4I2 956 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 RIOX1Q9H6W3 641 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 PSTPIP2Q9H939 334 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 POLD4Q9HCU8 107 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 LZTFL1Q9NQ48 299 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 SWAP70Q9UH65 585 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 KCNJ18B7U540 433 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 HOXA13P31271 388 aaPredicted RBP11.16□□□□□ -0.62
VPS53-206ENST00000570359 CASP14P31944 242 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 KCNJ12Q14500 433 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 FILIP1LQ4L180 1135 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 STRIP1Q5VSL9 837 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 TC2NQ8N9U0 490 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 DAGLBQ8NCG7 672 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 LRRN4CLQ8ND94 238 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 SNX29Q8TEQ0 813 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 ZDHHC15Q96MV8 337 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 EXOC1Q9NV70 894 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 PCDHA1Q9Y5I3 950 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 MYH4Q9Y623 1939 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 LTBP1Q14766 1721 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 PNMA6FA0A0J9YX94 578 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 TULP1O00294 542 aaPredicted RBP11.16□□□□□ -0.62
VPS53-206ENST00000570359 STAT3P40763 770 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 LRRC41Q15345 812 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 CDC37Q16543 378 aaPredicted RBP11.16□□□□□ -0.62
VPS53-206ENST00000570359 ABCB5Q2M3G0 1257 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 ZNF658Q5TYW1 1059 aaPredicted RBP11.16□□□□□ -0.62
VPS53-206ENST00000570359 KIF18AQ8NI77 898 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 PCMTD1Q96MG8 357 aaPredicted RBP11.16□□□□□ -0.62
VPS53-206ENST00000570359 SRRTQ9BXP5 876 aaKnown RBP11.16□□□□□ -0.62
VPS53-206ENST00000570359 PI4KBQ9UBF8 816 aa11.16□□□□□ -0.62
VPS53-206ENST00000570359 ZNF215Q9UL58 517 aaPredicted RBP11.16□□□□□ -0.62
VPS53-206ENST00000570359 LRRC37AA6NMS7 1700 aa11.15□□□□□ -0.62
VPS53-206ENST00000570359 ECE1P42892 770 aa11.15□□□□□ -0.62
VPS53-206ENST00000570359 UBXN2AP68543 259 aa11.15□□□□□ -0.62
VPS53-206ENST00000570359 UBXN1Q04323 297 aa11.15□□□□□ -0.62
VPS53-206ENST00000570359 RRP1BQ14684 758 aaKnown RBP11.15□□□□□ -0.62
VPS53-206ENST00000570359 GALNT17Q6IS24 598 aa11.15□□□□□ -0.62
VPS53-206ENST00000570359 NYAP1Q6ZVC0 841 aa11.15□□□□□ -0.62
VPS53-206ENST00000570359 FCHSD1Q86WN1 690 aa11.15□□□□□ -0.62
VPS53-206ENST00000570359 CUL5Q93034 780 aa11.15□□□□□ -0.62
VPS53-206ENST00000570359 CNKSR1Q969H4 720 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms