RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 SLC4A4Q9Y6R1 1079 aa19.41■□□□□ 0.7
CLK3-223ENST00000568488 BAZ2AQ9UIF9 1905 aaKnown RBP19.41■□□□□ 0.7
CLK3-223ENST00000568488 PIEZO1Q92508 2521 aa19.41■□□□□ 0.7
CLK3-223ENST00000568488 ARHGEF15O94989 841 aa19.4■□□□□ 0.7
CLK3-223ENST00000568488 MRE11P49959 708 aa19.4■□□□□ 0.7
CLK3-223ENST00000568488 ZKSCAN2Q63HK3 967 aa19.4■□□□□ 0.7
CLK3-223ENST00000568488 CTR9Q6PD62 1173 aa19.4■□□□□ 0.7
CLK3-223ENST00000568488 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.4■□□□□ 0.7
CLK3-223ENST00000568488 EEPD1Q7L9B9 569 aa19.4■□□□□ 0.7
CLK3-223ENST00000568488 FTOQ9C0B1 505 aaKnown RBP eCLIP19.4■□□□□ 0.7
CLK3-223ENST00000568488 PDGFCQ9NRA1 345 aa19.4■□□□□ 0.7
CLK3-223ENST00000568488 CLIP2Q9UDT6 1046 aa19.4■□□□□ 0.7
CLK3-223ENST00000568488 SOWAHBA6NEL2 793 aa19.39■□□□□ 0.69
CLK3-223ENST00000568488 ASB14A6NK59 587 aa19.39■□□□□ 0.69
CLK3-223ENST00000568488 PRR33A8MZF0 331 aa19.39■□□□□ 0.69
CLK3-223ENST00000568488 SUPT20HL2P0C7V6 817 aa19.39■□□□□ 0.69
CLK3-223ENST00000568488 ADD2P35612 726 aa19.39■□□□□ 0.69
CLK3-223ENST00000568488 TMEM63BQ5T3F8 832 aa19.39■□□□□ 0.69
CLK3-223ENST00000568488 HERC6Q8IVU3 1022 aa19.39■□□□□ 0.69
CLK3-223ENST00000568488 FAM133AQ8N9E0 248 aa19.39■□□□□ 0.69
CLK3-223ENST00000568488 PHOSPHO2Q8TCD6 241 aa19.39■□□□□ 0.69
CLK3-223ENST00000568488 MKNK2Q9HBH9 465 aa19.39■□□□□ 0.69
CLK3-223ENST00000568488 NYAP2Q9P242 653 aa19.39■□□□□ 0.69
CLK3-223ENST00000568488 FEM1BQ9UK73 627 aa19.39■□□□□ 0.69
CLK3-223ENST00000568488 ISY1Q9ULR0 285 aaKnown RBP19.39■□□□□ 0.69
CLK3-223ENST00000568488 COG6Q9Y2V7 657 aa19.39■□□□□ 0.69
CLK3-223ENST00000568488 DDX49Q9Y6V7 483 aaKnown RBP19.39■□□□□ 0.69
CLK3-223ENST00000568488 TNKSO95271 1327 aa19.38■□□□□ 0.69
CLK3-223ENST00000568488 IQSEC1Q6DN90 963 aa19.38■□□□□ 0.69
CLK3-223ENST00000568488 ACAD9Q9H845 621 aa19.38■□□□□ 0.69
CLK3-223ENST00000568488 SSTR3P32745 418 aaPredicted RBP19.37■□□□□ 0.69
CLK3-223ENST00000568488 OAZ1P54368 228 aa19.37■□□□□ 0.69
CLK3-223ENST00000568488 CSPP1Q1MSJ5 1256 aa19.37■□□□□ 0.69
CLK3-223ENST00000568488 SPRED2Q7Z698 418 aa19.37■□□□□ 0.69
CLK3-223ENST00000568488 ITPRIPQ8IWB1 547 aa19.37■□□□□ 0.69
CLK3-223ENST00000568488 FBXO16Q8IX29 292 aaPredicted RBP19.37■□□□□ 0.69
CLK3-223ENST00000568488 GJD3Q8N144 294 aa19.37■□□□□ 0.69
CLK3-223ENST00000568488 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.37■□□□□ 0.69
CLK3-223ENST00000568488 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.37■□□□□ 0.695e-7■■■□□ 15.4
CLK3-223ENST00000568488 LPXNO60711 386 aa19.36■□□□□ 0.69
CLK3-223ENST00000568488 CHGBP05060 677 aa19.36■□□□□ 0.69
CLK3-223ENST00000568488 IFIT2P09913 472 aaKnown RBP19.36■□□□□ 0.69
CLK3-223ENST00000568488 FAM47CQ5HY64 1035 aa19.36■□□□□ 0.69
CLK3-223ENST00000568488 KIAA1211Q6ZU35 1233 aa19.36■□□□□ 0.69
CLK3-223ENST00000568488 CLASRPQ8N2M8 674 aaKnown RBP19.36■□□□□ 0.69
CLK3-223ENST00000568488 RETREG2Q8NC44 543 aa19.36■□□□□ 0.69
CLK3-223ENST00000568488 RHPN1Q8TCX5 695 aa19.36■□□□□ 0.69
CLK3-223ENST00000568488 BOLA2Q9H3K6 86 aa19.36■□□□□ 0.69
CLK3-223ENST00000568488 A1CFQ9NQ94 594 aaKnown RBP19.36■□□□□ 0.69
CLK3-223ENST00000568488 RNF146Q9NTX7 359 aa19.36■□□□□ 0.69
CLK3-223ENST00000568488 PAG1Q9NWQ8 432 aa19.36■□□□□ 0.69
CLK3-223ENST00000568488 MYL3P08590 195 aa19.35■□□□□ 0.69
CLK3-223ENST00000568488 RASA1P20936 1047 aa19.35■□□□□ 0.69
CLK3-223ENST00000568488 RFC2P35250 354 aa19.35■□□□□ 0.69
CLK3-223ENST00000568488 TAPT1Q6NXT6 567 aa19.35■□□□□ 0.69
CLK3-223ENST00000568488 CEP85Q6P2H3 762 aa19.35■□□□□ 0.69
CLK3-223ENST00000568488 FTSJ3Q8IY81 847 aaKnown RBP19.35■□□□□ 0.69
CLK3-223ENST00000568488 GDPD5Q8WTR4 605 aa19.35■□□□□ 0.69
CLK3-223ENST00000568488 Q9Y3F1 56 aa19.35■□□□□ 0.69
CLK3-223ENST00000568488 MINDY4BA8MYZ0 360 aa19.34■□□□□ 0.69
CLK3-223ENST00000568488 IQCF3P0C7M6 154 aa19.34■□□□□ 0.69
CLK3-223ENST00000568488 HSP90AB4PQ58FF6 505 aa19.34■□□□□ 0.69
CLK3-223ENST00000568488 PPP1R13LQ8WUF5 828 aa19.34■□□□□ 0.69
CLK3-223ENST00000568488 CHMP4CQ96CF2 233 aa19.34■□□□□ 0.69
CLK3-223ENST00000568488 TRERF1Q96PN7 1200 aa19.34■□□□□ 0.69
CLK3-223ENST00000568488 ZBED2Q9BTP6 218 aa19.34■□□□□ 0.69
CLK3-223ENST00000568488 GPHNQ9NQX3 736 aaPredicted RBP19.34■□□□□ 0.69
CLK3-223ENST00000568488 POLR3EQ9NVU0 708 aa19.34■□□□□ 0.69
CLK3-223ENST00000568488 ARPP21Q9UBL0 812 aaPredicted RBP19.34■□□□□ 0.69
CLK3-223ENST00000568488 SCN5AQ14524 2016 aa19.34■□□□□ 0.69
CLK3-223ENST00000568488 BMP3P12645 472 aa19.33■□□□□ 0.68
CLK3-223ENST00000568488 ALAS1P13196 640 aa19.33■□□□□ 0.68
CLK3-223ENST00000568488 ALADP13716 330 aa19.33■□□□□ 0.68
CLK3-223ENST00000568488 KCNJ6P48051 423 aa19.33■□□□□ 0.68
CLK3-223ENST00000568488 IKQ13123 557 aaPredicted RBP19.33■□□□□ 0.68
CLK3-223ENST00000568488 FAM178BQ8IXR5 827 aa19.33■□□□□ 0.68
CLK3-223ENST00000568488 LRRC47Q8N1G4 583 aaKnown RBP19.33■□□□□ 0.68
CLK3-223ENST00000568488 UBE2ZQ9H832 354 aaPredicted RBP19.33■□□□□ 0.68
CLK3-223ENST00000568488 MTUS1Q9ULD2 1270 aa19.33■□□□□ 0.68
CLK3-223ENST00000568488 ZBED9Q6R2W3 1325 aa19.32■□□□□ 0.68
CLK3-223ENST00000568488 LCHNA4D1U4 455 aa19.32■□□□□ 0.68
CLK3-223ENST00000568488 TMEM232C9JQI7 657 aa19.32■□□□□ 0.68
CLK3-223ENST00000568488 FDX1P10109 184 aa19.32■□□□□ 0.68
CLK3-223ENST00000568488 KCNA5P22460 613 aa19.32■□□□□ 0.68
CLK3-223ENST00000568488 SLFN13Q68D06 897 aa19.32■□□□□ 0.68
CLK3-223ENST00000568488 TMCO2Q7Z6W1 182 aaPredicted RBP19.32■□□□□ 0.68
CLK3-223ENST00000568488 ZNF444Q8N0Y2 327 aaPredicted RBP19.32■□□□□ 0.68
CLK3-223ENST00000568488 SNX27Q96L92 541 aa19.32■□□□□ 0.68
CLK3-223ENST00000568488 LMCD1Q9NZU5 365 aa19.32■□□□□ 0.68
CLK3-223ENST00000568488 PURAQ00577 322 aaKnown RBP19.31■□□□□ 0.68
CLK3-223ENST00000568488 NHLH1Q02575 133 aa19.31■□□□□ 0.68
CLK3-223ENST00000568488 UBE3CQ15386 1083 aa19.31■□□□□ 0.68
CLK3-223ENST00000568488 NBPF20Q3BBV1 942 aa19.31■□□□□ 0.68
CLK3-223ENST00000568488 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.31■□□□□ 0.68
CLK3-223ENST00000568488 MKL1Q969V6 931 aa19.31■□□□□ 0.68
CLK3-223ENST00000568488 CEP95Q96GE4 821 aa19.31■□□□□ 0.68
CLK3-223ENST00000568488 MTG1Q9BT17 334 aaPredicted RBP19.31■□□□□ 0.68
CLK3-223ENST00000568488 PUS7LQ9H0K6 701 aaKnown RBP19.31■□□□□ 0.68
CLK3-223ENST00000568488 VTA1Q9NP79 307 aa19.31■□□□□ 0.68
CLK3-223ENST00000568488 ZNF536O15090 1300 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms