RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 IQSEC1Q6DN90 963 aa17.55■□□□□ 0.4
CLN3-222ENST00000566083 B4GALNT3Q6L9W6 998 aa17.55■□□□□ 0.4
CLN3-222ENST00000566083 NOL8Q76FK4 1167 aaKnown RBP17.55■□□□□ 0.4
CLN3-222ENST00000566083 SH3RF1Q7Z6J0 888 aa17.55■□□□□ 0.4
CLN3-222ENST00000566083 VTI1AQ96AJ9 217 aa17.55■□□□□ 0.4
CLN3-222ENST00000566083 MPHOSPH6Q99547 160 aaKnown RBP17.55■□□□□ 0.4
CLN3-222ENST00000566083 TMEM47Q9BQJ4 181 aa17.55■□□□□ 0.4
CLN3-222ENST00000566083 RANBP17Q9H2T7 1088 aaKnown RBP17.55■□□□□ 0.4
CLN3-222ENST00000566083 CYP39A1Q9NYL5 469 aa17.55■□□□□ 0.4
CLN3-222ENST00000566083 MCM3APO60318 1980 aa17.54■□□□□ 0.4
CLN3-222ENST00000566083 LTBP2Q14767 1821 aa17.54■□□□□ 0.4
CLN3-222ENST00000566083 A0A0U1RQG5 324 aaPredicted RBP17.54■□□□□ 0.4
CLN3-222ENST00000566083 ZNF213O14771 459 aa17.54■□□□□ 0.4
CLN3-222ENST00000566083 ASGR1P07306 291 aa17.54■□□□□ 0.4
CLN3-222ENST00000566083 SMAD3P84022 425 aaKnown RBP17.54■□□□□ 0.4
CLN3-222ENST00000566083 FPGSQ05932 587 aa17.54■□□□□ 0.4
CLN3-222ENST00000566083 SHHQ15465 462 aa17.54■□□□□ 0.4
CLN3-222ENST00000566083 ZNF697Q5TEC3 545 aa17.54■□□□□ 0.4
CLN3-222ENST00000566083 ZNF589Q86UQ0 364 aaPredicted RBP17.54■□□□□ 0.4
CLN3-222ENST00000566083 PLEKHM2Q8IWE5 1019 aa17.54■□□□□ 0.4
CLN3-222ENST00000566083 YTHDC1Q96MU7 727 aaKnown RBP17.54■□□□□ 0.4
CLN3-222ENST00000566083 KATNBL1Q9H079 304 aa17.54■□□□□ 0.4
CLN3-222ENST00000566083 AP5M1Q9H0R1 490 aa17.54■□□□□ 0.4
CLN3-222ENST00000566083 VTA1Q9NP79 307 aa17.54■□□□□ 0.4
CLN3-222ENST00000566083 DIAPH3Q9NSV4 1193 aa17.54■□□□□ 0.4
CLN3-222ENST00000566083 MTMR7Q9Y216 660 aa17.54■□□□□ 0.4
CLN3-222ENST00000566083 SOWAHBA6NEL2 793 aa17.53■□□□□ 0.4
CLN3-222ENST00000566083 TLR3O15455 904 aaKnown RBP17.53■□□□□ 0.4
CLN3-222ENST00000566083 FAAP100Q0VG06 881 aa17.53■□□□□ 0.4
CLN3-222ENST00000566083 GPATCH4Q5T3I0 446 aaKnown RBP17.53■□□□□ 0.4
CLN3-222ENST00000566083 NSMFQ6X4W1 530 aa17.53■□□□□ 0.4
CLN3-222ENST00000566083 Q7L0L9 218 aa17.53■□□□□ 0.4
CLN3-222ENST00000566083 IQCA1Q86XH1 822 aa17.53■□□□□ 0.4
CLN3-222ENST00000566083 DGKHQ86XP1 1220 aa17.53■□□□□ 0.4
CLN3-222ENST00000566083 MAF1Q9H063 256 aa17.53■□□□□ 0.4
CLN3-222ENST00000566083 B4DLN1 442 aa17.52■□□□□ 0.4
CLN3-222ENST00000566083 ARVCFO00192 962 aa17.52■□□□□ 0.4
CLN3-222ENST00000566083 PDHBP11177 359 aa17.52■□□□□ 0.4
CLN3-222ENST00000566083 CDK7P50613 346 aa17.52■□□□□ 0.4
CLN3-222ENST00000566083 MRPL12P52815 198 aaKnown RBP17.52■□□□□ 0.4
CLN3-222ENST00000566083 HAND2P61296 217 aa17.52■□□□□ 0.4
CLN3-222ENST00000566083 CHMP4CQ96CF2 233 aa17.52■□□□□ 0.4
CLN3-222ENST00000566083 CTNNA3Q9UI47 895 aa17.52■□□□□ 0.4
CLN3-222ENST00000566083 WDR19Q8NEZ3 1342 aa17.51■□□□□ 0.39
CLN3-222ENST00000566083 TIMP1P01033 207 aa17.51■□□□□ 0.39
CLN3-222ENST00000566083 ZNF543Q08ER8 600 aa17.51■□□□□ 0.39
CLN3-222ENST00000566083 MUM1L1Q5H9M0 696 aa17.51■□□□□ 0.39
CLN3-222ENST00000566083 TLK2Q86UE8 772 aa17.51■□□□□ 0.39
CLN3-222ENST00000566083 MORC4Q8TE76 937 aa17.51■□□□□ 0.39
CLN3-222ENST00000566083 GNEQ9Y223 722 aaKnown RBP17.51■□□□□ 0.39
CLN3-222ENST00000566083 TMEM265A0A087WTH1 108 aa17.5■□□□□ 0.39
CLN3-222ENST00000566083 MYADML2A6NDP7 307 aa17.5■□□□□ 0.39
CLN3-222ENST00000566083 SNHG28P0DPA3 235 aa17.5■□□□□ 0.39
CLN3-222ENST00000566083 SLC16A2P36021 539 aa17.5■□□□□ 0.39
CLN3-222ENST00000566083 FSCN1Q16658 493 aaKnown RBP17.5■□□□□ 0.39
CLN3-222ENST00000566083 C9orf50Q5SZB4 431 aa17.5■□□□□ 0.39
CLN3-222ENST00000566083 CWC27Q6UX04 472 aaKnown RBP17.5■□□□□ 0.39
CLN3-222ENST00000566083 RNPC3Q96LT9 517 aaKnown RBP17.5■□□□□ 0.39
CLN3-222ENST00000566083 DSCC1Q9BVC3 393 aa17.5■□□□□ 0.39
CLN3-222ENST00000566083 GPCPD1Q9NPB8 672 aa17.5■□□□□ 0.39
CLN3-222ENST00000566083 TBX21Q9UL17 535 aa17.5■□□□□ 0.39
CLN3-222ENST00000566083 ADCY6O43306 1168 aa17.49■□□□□ 0.39
CLN3-222ENST00000566083 IGHDP01880 384 aa17.49■□□□□ 0.39
CLN3-222ENST00000566083 SNAP25P60880 206 aa17.49■□□□□ 0.39
CLN3-222ENST00000566083 PPIGQ13427 754 aaKnown RBP eCLIP17.49■□□□□ 0.396e-7■■□□□ 11.8
CLN3-222ENST00000566083 BAATQ14032 418 aaPredicted RBP17.49■□□□□ 0.39
CLN3-222ENST00000566083 IMMTQ16891 758 aaKnown RBP17.49■□□□□ 0.39
CLN3-222ENST00000566083 TTBK2Q6IQ55 1244 aa17.49■□□□□ 0.39
CLN3-222ENST00000566083 MFSD5Q6N075 450 aa17.49■□□□□ 0.39
CLN3-222ENST00000566083 TMEM199Q8N511 208 aa17.49■□□□□ 0.39
CLN3-222ENST00000566083 FRMPD2Q68DX3 1309 aaPredicted RBP17.49■□□□□ 0.39
CLN3-222ENST00000566083 PTPDC1A2A3K4 754 aa17.48■□□□□ 0.39
CLN3-222ENST00000566083 ITGB8P26012 769 aa17.48■□□□□ 0.39
CLN3-222ENST00000566083 RNF207Q6ZRF8 634 aa17.48■□□□□ 0.39
CLN3-222ENST00000566083 TBC1D10CQ8IV04 446 aa17.48■□□□□ 0.39
CLN3-222ENST00000566083 DNERQ8NFT8 737 aa17.48■□□□□ 0.39
CLN3-222ENST00000566083 KRT23Q9C075 422 aa17.48■□□□□ 0.39
CLN3-222ENST00000566083 CNNM2Q9H8M5 875 aa17.48■□□□□ 0.39
CLN3-222ENST00000566083 CTAGE5O15320 804 aa17.47■□□□□ 0.39
CLN3-222ENST00000566083 DYNC1LI2O43237 492 aaPredicted RBP17.47■□□□□ 0.39
CLN3-222ENST00000566083 SMPD1P17405 629 aa17.47■□□□□ 0.39
CLN3-222ENST00000566083 ALDH5A1P51649 535 aaPredicted RBP17.47■□□□□ 0.39
CLN3-222ENST00000566083 DUSP28Q4G0W2 176 aa17.47■□□□□ 0.39
CLN3-222ENST00000566083 BRDTQ58F21 947 aaPredicted RBP17.47■□□□□ 0.39
CLN3-222ENST00000566083 TAPT1Q6NXT6 567 aa17.47■□□□□ 0.39
CLN3-222ENST00000566083 KIAA1211Q6ZU35 1233 aa17.47■□□□□ 0.39
CLN3-222ENST00000566083 RASGRP2Q7LDG7 609 aa17.47■□□□□ 0.39
CLN3-222ENST00000566083 FAM126BQ8IXS8 530 aa17.47■□□□□ 0.39
CLN3-222ENST00000566083 RGS22Q8NE09 1264 aa17.47■□□□□ 0.39
CLN3-222ENST00000566083 EXOC6Q8TAG9 804 aa17.47■□□□□ 0.39
CLN3-222ENST00000566083 ANKS1AQ92625 1134 aa17.47■□□□□ 0.39
CLN3-222ENST00000566083 KAT14Q9H8E8 782 aa17.47■□□□□ 0.39
CLN3-222ENST00000566083 CUL9Q8IWT3 2517 aa17.47■□□□□ 0.39
CLN3-222ENST00000566083 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.47■□□□□ 0.39
CLN3-222ENST00000566083 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.47■□□□□ 0.39
CLN3-222ENST00000566083 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.47■□□□□ 0.39
CLN3-222ENST00000566083 NFIBO00712 420 aa17.47■□□□□ 0.39
CLN3-222ENST00000566083 NKRFO15226 690 aaKnown RBP eCLIP17.47■□□□□ 0.39
CLN3-222ENST00000566083 BEX3Q00994 111 aa17.47■□□□□ 0.39
CLN3-222ENST00000566083 EEPD1Q7L9B9 569 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms