RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 TMEM47Q9BQJ4 181 aa22.07■■□□□ 1.12
CLN3-218ENST00000565688 RANBP17Q9H2T7 1088 aaKnown RBP22.07■■□□□ 1.12
CLN3-218ENST00000565688 CYP39A1Q9NYL5 469 aa22.07■■□□□ 1.12
CLN3-218ENST00000565688 ITGB8P26012 769 aa22.06■■□□□ 1.12
CLN3-218ENST00000565688 SMAD3P84022 425 aaKnown RBP22.06■■□□□ 1.12
CLN3-218ENST00000565688 MUM1L1Q5H9M0 696 aa22.06■■□□□ 1.12
CLN3-218ENST00000565688 AKNAD1Q5T1N1 836 aa22.06■■□□□ 1.12
CLN3-218ENST00000565688 ZNF697Q5TEC3 545 aa22.06■■□□□ 1.12
CLN3-218ENST00000565688 SYDE2Q5VT97 1194 aa22.06■■□□□ 1.12
CLN3-218ENST00000565688 B4GALNT3Q6L9W6 998 aa22.06■■□□□ 1.12
CLN3-218ENST00000565688 NOL8Q76FK4 1167 aaKnown RBP22.06■■□□□ 1.12
CLN3-218ENST00000565688 RASGRP2Q7LDG7 609 aa22.06■■□□□ 1.12
CLN3-218ENST00000565688 VTI1AQ96AJ9 217 aa22.06■■□□□ 1.12
CLN3-218ENST00000565688 YTHDC1Q96MU7 727 aaKnown RBP22.06■■□□□ 1.12
CLN3-218ENST00000565688 TTC14Q96N46 770 aa22.06■■□□□ 1.12
CLN3-218ENST00000565688 OSBPL3Q9H4L5 887 aa22.06■■□□□ 1.12
CLN3-218ENST00000565688 RNF41Q9H4P4 317 aaPredicted RBP22.06■■□□□ 1.12
CLN3-218ENST00000565688 PNMA2Q9UL42 364 aa22.06■■□□□ 1.12
CLN3-218ENST00000565688 A0A0U1RQG5 324 aaPredicted RBP22.05■■□□□ 1.12
CLN3-218ENST00000565688 SDSP20132 328 aa22.05■■□□□ 1.12
CLN3-218ENST00000565688 NT5C2P49902 561 aa22.05■■□□□ 1.12
CLN3-218ENST00000565688 HAND2P61296 217 aa22.05■■□□□ 1.12
CLN3-218ENST00000565688 FPGSQ05932 587 aa22.05■■□□□ 1.12
CLN3-218ENST00000565688 SLC16A2P36021 539 aa22.04■■□□□ 1.12
CLN3-218ENST00000565688 CDK7P50613 346 aa22.04■■□□□ 1.12
CLN3-218ENST00000565688 NUCB1Q02818 461 aa22.04■■□□□ 1.12
CLN3-218ENST00000565688 TTBK2Q6IQ55 1244 aa22.04■■□□□ 1.12
CLN3-218ENST00000565688 NSMFQ6X4W1 530 aa22.04■■□□□ 1.12
CLN3-218ENST00000565688 LOC102724159A0A0B4J2E5 919 aa22.03■■□□□ 1.12
CLN3-218ENST00000565688 ARVCFO00192 962 aa22.03■■□□□ 1.12
CLN3-218ENST00000565688 CTAGE5O15320 804 aa22.03■■□□□ 1.12
CLN3-218ENST00000565688 TIMP1P01033 207 aa22.03■■□□□ 1.12
CLN3-218ENST00000565688 PDHBP11177 359 aa22.03■■□□□ 1.12
CLN3-218ENST00000565688 IRX5P78411 483 aaPredicted RBP22.03■■□□□ 1.12
CLN3-218ENST00000565688 PWP2Q15269 919 aaKnown RBP22.03■■□□□ 1.12
CLN3-218ENST00000565688 IQSEC1Q6DN90 963 aa22.03■■□□□ 1.12
CLN3-218ENST00000565688 PLEKHM2Q8IWE5 1019 aa22.03■■□□□ 1.12
CLN3-218ENST00000565688 ESR2Q92731 530 aa22.03■■□□□ 1.12
CLN3-218ENST00000565688 RNPC3Q96LT9 517 aaKnown RBP22.03■■□□□ 1.12
CLN3-218ENST00000565688 AP5M1Q9H0R1 490 aa22.03■■□□□ 1.12
CLN3-218ENST00000565688 VTA1Q9NP79 307 aa22.03■■□□□ 1.12
CLN3-218ENST00000565688 GPCPD1Q9NPB8 672 aa22.03■■□□□ 1.12
CLN3-218ENST00000565688 ADD3Q9UEY8 706 aaKnown RBP22.03■■□□□ 1.12
CLN3-218ENST00000565688 TBX21Q9UL17 535 aa22.03■■□□□ 1.12
CLN3-218ENST00000565688 GNEQ9Y223 722 aaKnown RBP22.03■■□□□ 1.12
CLN3-218ENST00000565688 ASTN1O14525 1302 aa22.03■■□□□ 1.12
CLN3-218ENST00000565688 FRMPD2Q68DX3 1309 aaPredicted RBP22.03■■□□□ 1.12
CLN3-218ENST00000565688 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.02■■□□□ 1.12
CLN3-218ENST00000565688 HIP1O00291 1037 aa22.02■■□□□ 1.12
CLN3-218ENST00000565688 CABYRO75952 493 aa22.02■■□□□ 1.12
CLN3-218ENST00000565688 TLK2Q86UE8 772 aa22.02■■□□□ 1.12
CLN3-218ENST00000565688 MORC4Q8TE76 937 aa22.02■■□□□ 1.12
CLN3-218ENST00000565688 GUCD1Q96NT3 240 aa22.02■■□□□ 1.12
CLN3-218ENST00000565688 Q9Y3F1 56 aa22.02■■□□□ 1.12
CLN3-218ENST00000565688 ZNF213O14771 459 aa22.01■■□□□ 1.11
CLN3-218ENST00000565688 TLR3O15455 904 aaKnown RBP22.01■■□□□ 1.11
CLN3-218ENST00000565688 ZEB2O60315 1214 aa22.01■■□□□ 1.11
CLN3-218ENST00000565688 IGHDP01880 384 aa22.01■■□□□ 1.11
CLN3-218ENST00000565688 EPHB4P54760 987 aa22.01■■□□□ 1.11
CLN3-218ENST00000565688 ZNF543Q08ER8 600 aa22.01■■□□□ 1.11
CLN3-218ENST00000565688 BAATQ14032 418 aaPredicted RBP22.01■■□□□ 1.11
CLN3-218ENST00000565688 FSCN1Q16658 493 aaKnown RBP22.01■■□□□ 1.11
CLN3-218ENST00000565688 TBC1D10CQ8IV04 446 aa22.01■■□□□ 1.11
CLN3-218ENST00000565688 FAM161BQ96MY7 647 aa22.01■■□□□ 1.11
CLN3-218ENST00000565688 SEZ6LQ9BYH1 1024 aa22.01■■□□□ 1.11
CLN3-218ENST00000565688 DIAPH3Q9NSV4 1193 aa22.01■■□□□ 1.11
CLN3-218ENST00000565688 SNHG28P0DPA3 235 aa22■■□□□ 1.11
CLN3-218ENST00000565688 SMPD1P17405 629 aa22■■□□□ 1.11
CLN3-218ENST00000565688 BEX3Q00994 111 aa22■■□□□ 1.11
CLN3-218ENST00000565688 CCDC178Q5BJE1 867 aa22■■□□□ 1.11
CLN3-218ENST00000565688 MFSD5Q6N075 450 aa22■■□□□ 1.11
CLN3-218ENST00000565688 TAPT1Q6NXT6 567 aa22■■□□□ 1.11
CLN3-218ENST00000565688 NFIBO00712 420 aa21.99■■□□□ 1.11
CLN3-218ENST00000565688 DYNC1LI2O43237 492 aaPredicted RBP21.99■■□□□ 1.11
CLN3-218ENST00000565688 GPATCH4Q5T3I0 446 aaKnown RBP21.99■■□□□ 1.11
CLN3-218ENST00000565688 CWC27Q6UX04 472 aaKnown RBP21.99■■□□□ 1.11
CLN3-218ENST00000565688 EEPD1Q7L9B9 569 aa21.99■■□□□ 1.11
CLN3-218ENST00000565688 DGKHQ86XP1 1220 aa21.99■■□□□ 1.11
CLN3-218ENST00000565688 FBXO16Q8IX29 292 aaPredicted RBP21.99■■□□□ 1.11
CLN3-218ENST00000565688 FAM126BQ8IXS8 530 aa21.99■■□□□ 1.11
CLN3-218ENST00000565688 LRRC37A2A6NM11 1700 aa21.99■■□□□ 1.11
CLN3-218ENST00000565688 WDR19Q8NEZ3 1342 aa21.99■■□□□ 1.11
CLN3-218ENST00000565688 CUL9Q8IWT3 2517 aa21.98■■□□□ 1.11
CLN3-218ENST00000565688 TMEM265A0A087WTH1 108 aa21.98■■□□□ 1.11
CLN3-218ENST00000565688 PTPDC1A2A3K4 754 aa21.98■■□□□ 1.11
CLN3-218ENST00000565688 DLL1O00548 723 aa21.98■■□□□ 1.11
CLN3-218ENST00000565688 PPIGQ13427 754 aaKnown RBP eCLIP21.98■■□□□ 1.117e-7■■□□□ 11.5
CLN3-218ENST00000565688 CXCL17Q6UXB2 119 aa21.98■■□□□ 1.11
CLN3-218ENST00000565688 IQCA1Q86XH1 822 aa21.98■■□□□ 1.11
CLN3-218ENST00000565688 SLC43A3Q8NBI5 491 aa21.98■■□□□ 1.11
CLN3-218ENST00000565688 EXOC6Q8TAG9 804 aa21.98■■□□□ 1.11
CLN3-218ENST00000565688 MPHOSPH6Q99547 160 aaKnown RBP21.98■■□□□ 1.11
CLN3-218ENST00000565688 SEMA6BQ9H3T3 888 aa21.98■■□□□ 1.11
CLN3-218ENST00000565688 PDGFCQ9NRA1 345 aa21.98■■□□□ 1.11
CLN3-218ENST00000565688 NEDD4P46934 1319 aa21.98■■□□□ 1.11
CLN3-218ENST00000565688 ALDH5A1P51649 535 aaPredicted RBP21.97■■□□□ 1.11
CLN3-218ENST00000565688 KIAA1211Q6ZU35 1233 aa21.97■■□□□ 1.11
CLN3-218ENST00000565688 TMEM199Q8N511 208 aa21.97■■□□□ 1.11
CLN3-218ENST00000565688 CLEC4DQ8WXI8 215 aa21.97■■□□□ 1.11
CLN3-218ENST00000565688 PURBQ96QR8 312 aaKnown RBP21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms