RNA–Protein interactions for RNA: ENST00000565173.1

CAPN3-213, Transcript of calpain 3, humanhuman

TSL 4

Gene CAPN3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-213ENST00000565173 TICAM2Q86XR7 235 aa10.16□□□□□ -0.78
CAPN3-213ENST00000565173 PCSK9Q8NBP7 692 aaKnown RBP10.16□□□□□ -0.78
CAPN3-213ENST00000565173 GLT1D1Q96MS3 346 aa10.16□□□□□ -0.78
CAPN3-213ENST00000565173 PURBQ96QR8 312 aaKnown RBP10.16□□□□□ -0.78
CAPN3-213ENST00000565173 CYP39A1Q9NYL5 469 aa10.16□□□□□ -0.78
CAPN3-213ENST00000565173 GNEQ9Y223 722 aaKnown RBP10.16□□□□□ -0.78
CAPN3-213ENST00000565173 CHD7Q9P2D1 2997 aa10.16□□□□□ -0.78
CAPN3-213ENST00000565173 GRIN2DO15399 1336 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 MROH7Q68CQ1 1323 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 XIRP2A4UGR9 3374 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 ASB14A6NK59 587 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 CD4P01730 458 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 ICAM1P05362 532 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 HSPD1P10809 573 aaKnown RBP10.15□□□□□ -0.78
CAPN3-213ENST00000565173 SMPD1P17405 629 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 BEX3Q00994 111 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 TNFAIP2Q03169 654 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 IKQ13123 557 aaPredicted RBP10.15□□□□□ -0.78
CAPN3-213ENST00000565173 MCMDC2Q4G0Z9 681 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 TTBK2Q6IQ55 1244 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 MFSD5Q6N075 450 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 CCDC174Q6PII3 467 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 FAM126BQ8IXS8 530 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 SLC43A3Q8NBI5 491 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 MORC4Q8TE76 937 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 DCAF4Q8WV16 495 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 RNPC3Q96LT9 517 aaKnown RBP10.15□□□□□ -0.78
CAPN3-213ENST00000565173 TMEM47Q9BQJ4 181 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 RANBP17Q9H2T7 1088 aaKnown RBP10.15□□□□□ -0.78
CAPN3-213ENST00000565173 SPC25Q9HBM1 224 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 PDGFCQ9NRA1 345 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 TCP11L1Q9NUJ3 509 aa10.15□□□□□ -0.78
CAPN3-213ENST00000565173 ISY1Q9ULR0 285 aaKnown RBP10.15□□□□□ -0.78
CAPN3-213ENST00000565173 REV3LO60673 3130 aa10.15□□□□□ -0.79
CAPN3-213ENST00000565173 A0A0U1RQG5 324 aaPredicted RBP10.14□□□□□ -0.79
CAPN3-213ENST00000565173 TOP1P11387 765 aaKnown RBP10.14□□□□□ -0.79
CAPN3-213ENST00000565173 SLC16A2P36021 539 aa10.14□□□□□ -0.79
CAPN3-213ENST00000565173 TMEM240Q5SV17 173 aa10.14□□□□□ -0.79
CAPN3-213ENST00000565173 RASIP1Q5U651 963 aa10.14□□□□□ -0.79
CAPN3-213ENST00000565173 IQSEC1Q6DN90 963 aa10.14□□□□□ -0.79
CAPN3-213ENST00000565173 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.14□□□□□ -0.79
CAPN3-213ENST00000565173 VTI1AQ96AJ9 217 aa10.14□□□□□ -0.79
CAPN3-213ENST00000565173 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.14□□□□□ -0.79
CAPN3-213ENST00000565173 MTMR7Q9Y216 660 aa10.14□□□□□ -0.79
CAPN3-213ENST00000565173 LCTP09848 1927 aa10.13□□□□□ -0.79
CAPN3-213ENST00000565173 ZMYM6O95789 1325 aa10.13□□□□□ -0.79
CAPN3-213ENST00000565173 TMEM265A0A087WTH1 108 aa10.13□□□□□ -0.79
CAPN3-213ENST00000565173 DYNC1LI2O43237 492 aaPredicted RBP10.13□□□□□ -0.79
CAPN3-213ENST00000565173 CSF2RAP15509 400 aa10.13□□□□□ -0.79
CAPN3-213ENST00000565173 NMIQ13287 307 aaPredicted RBP10.13□□□□□ -0.79
CAPN3-213ENST00000565173 BAATQ14032 418 aaPredicted RBP10.13□□□□□ -0.79
CAPN3-213ENST00000565173 FSCN1Q16658 493 aaKnown RBP10.13□□□□□ -0.79
CAPN3-213ENST00000565173 CCDC96Q2M329 555 aa10.13□□□□□ -0.79
CAPN3-213ENST00000565173 SYDE2Q5VT97 1194 aa10.13□□□□□ -0.79
CAPN3-213ENST00000565173 CXCL17Q6UXB2 119 aa10.13□□□□□ -0.79
CAPN3-213ENST00000565173 EEPD1Q7L9B9 569 aa10.13□□□□□ -0.79
CAPN3-213ENST00000565173 TLK2Q86UE8 772 aa10.13□□□□□ -0.79
CAPN3-213ENST00000565173 FBXO16Q8IX29 292 aaPredicted RBP10.13□□□□□ -0.79
CAPN3-213ENST00000565173 SMC5Q8IY18 1101 aa10.13□□□□□ -0.79
CAPN3-213ENST00000565173 CLEC4DQ8WXI8 215 aa10.13□□□□□ -0.79
CAPN3-213ENST00000565173 MYLIPQ8WY64 445 aa10.13□□□□□ -0.79
CAPN3-213ENST00000565173 COL25A1Q9BXS0 654 aaPredicted RBP10.13□□□□□ -0.79
CAPN3-213ENST00000565173 LNPKQ9C0E8 428 aa10.13□□□□□ -0.79
CAPN3-213ENST00000565173 ZBTB47Q9UFB7 747 aaPredicted RBP10.13□□□□□ -0.79
CAPN3-213ENST00000565173 CCPG1Q9ULG6 757 aa10.13□□□□□ -0.79
CAPN3-213ENST00000565173 Q9Y3F1 56 aa10.13□□□□□ -0.79
CAPN3-213ENST00000565173 LRRC37A2A6NM11 1700 aa10.13□□□□□ -0.79
CAPN3-213ENST00000565173 FRMPD2Q68DX3 1309 aaPredicted RBP10.12□□□□□ -0.79
CAPN3-213ENST00000565173 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.12□□□□□ -0.79
CAPN3-213ENST00000565173 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.12□□□□□ -0.79
CAPN3-213ENST00000565173 NFIBO00712 420 aa10.12□□□□□ -0.79
CAPN3-213ENST00000565173 IGHDP01880 384 aa10.12□□□□□ -0.79
CAPN3-213ENST00000565173 SNHG28P0DPA3 235 aa10.12□□□□□ -0.79
CAPN3-213ENST00000565173 PDHBP11177 359 aa10.12□□□□□ -0.79
CAPN3-213ENST00000565173 HAND2P61296 217 aa10.12□□□□□ -0.79
CAPN3-213ENST00000565173 ZNF543Q08ER8 600 aa10.12□□□□□ -0.79
CAPN3-213ENST00000565173 GRIN2CQ14957 1233 aa10.12□□□□□ -0.79
CAPN3-213ENST00000565173 RRP12Q5JTH9 1297 aaKnown RBP10.12□□□□□ -0.79
CAPN3-213ENST00000565173 AKNAD1Q5T1N1 836 aa10.12□□□□□ -0.79
CAPN3-213ENST00000565173 NSMFQ6X4W1 530 aa10.12□□□□□ -0.79
CAPN3-213ENST00000565173 NOL8Q76FK4 1167 aaKnown RBP10.12□□□□□ -0.79
CAPN3-213ENST00000565173 MAFAQ8NHW3 353 aaPredicted RBP10.12□□□□□ -0.79
CAPN3-213ENST00000565173 VWCEQ96DN2 955 aa10.12□□□□□ -0.79
CAPN3-213ENST00000565173 TTC14Q96N46 770 aa10.12□□□□□ -0.79
CAPN3-213ENST00000565173 GPCPD1Q9NPB8 672 aa10.12□□□□□ -0.79
CAPN3-213ENST00000565173 TOMM22Q9NS69 142 aa10.12□□□□□ -0.79
CAPN3-213ENST00000565173 UMODL1Q5DID0 1318 aa10.11□□□□□ -0.79
CAPN3-213ENST00000565173 CCDC171Q6TFL3 1326 aa10.11□□□□□ -0.79
CAPN3-213ENST00000565173 LOC102724159A0A0B4J2E5 919 aa10.11□□□□□ -0.79
CAPN3-213ENST00000565173 RBM47A0AV96 593 aaKnown RBP10.11□□□□□ -0.79
CAPN3-213ENST00000565173 B4GALT4O60513 344 aa10.11□□□□□ -0.79
CAPN3-213ENST00000565173 CABYRO75952 493 aa10.11□□□□□ -0.79
CAPN3-213ENST00000565173 ACRP10323 421 aa10.11□□□□□ -0.79
CAPN3-213ENST00000565173 SDSP20132 328 aa10.11□□□□□ -0.79
CAPN3-213ENST00000565173 DNAJB2P25686 324 aa10.11□□□□□ -0.79
CAPN3-213ENST00000565173 CYP2C18P33260 490 aa10.11□□□□□ -0.79
CAPN3-213ENST00000565173 ALDH5A1P51649 535 aaPredicted RBP10.11□□□□□ -0.79
CAPN3-213ENST00000565173 PPIGQ13427 754 aaKnown RBP eCLIP10.11□□□□□ -0.79
CAPN3-213ENST00000565173 ITGA7Q13683 1181 aa10.11□□□□□ -0.79
CAPN3-213ENST00000565173 PWP2Q15269 919 aaKnown RBP10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms