RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 CDC23Q9UJX2 597 aa15.13■□□□□ 0.01
CLK3-215ENST00000564353 PLEKP08567 350 aaPredicted RBP15.12■□□□□ 0.01
CLK3-215ENST00000564353 TRIM21P19474 475 aaKnown RBP15.12■□□□□ 0.01
CLK3-215ENST00000564353 SPTY2D1Q68D10 685 aaPredicted RBP15.12■□□□□ 0.01
CLK3-215ENST00000564353 RMND1Q9NWS8 449 aa15.12■□□□□ 0.01
CLK3-215ENST00000564353 EPN1Q9Y6I3 576 aaPredicted RBP15.12■□□□□ 0.01
CLK3-215ENST00000564353 MACROD2A1Z1Q3 448 aa15.12■□□□□ 0.01
CLK3-215ENST00000564353 POTEMA6NI47 508 aa15.12■□□□□ 0.01
CLK3-215ENST00000564353 H3BQF6 201 aa15.12■□□□□ 0.01
CLK3-215ENST00000564353 M0R2N6 131 aa15.12■□□□□ 0.01
CLK3-215ENST00000564353 LRRC41Q15345 812 aa15.12■□□□□ 0.01
CLK3-215ENST00000564353 MFSD14BQ5SR56 506 aa15.12■□□□□ 0.01
CLK3-215ENST00000564353 TMTC1Q8IUR5 882 aa15.12■□□□□ 0.01
CLK3-215ENST00000564353 GLIS3Q8NEA6 775 aa15.12■□□□□ 0.01
CLK3-215ENST00000564353 SMCR8Q8TEV9 937 aaPredicted RBP15.12■□□□□ 0.01
CLK3-215ENST00000564353 PSMB7Q99436 277 aa15.12■□□□□ 0.01
CLK3-215ENST00000564353 MAGEC2Q9UBF1 373 aaPredicted RBP15.12■□□□□ 0.01
CLK3-215ENST00000564353 LUC7L2Q9Y383 392 aaKnown RBP15.12■□□□□ 0.01
CLK3-215ENST00000564353 RCCD1A6NED2 376 aa15.12■□□□□ 0.01
CLK3-215ENST00000564353 C6orf229H3BNL8 230 aa15.12■□□□□ 0.01
CLK3-215ENST00000564353 NDUFA10O95299 355 aa15.12■□□□□ 0.01
CLK3-215ENST00000564353 IDEP14735 1019 aa15.12■□□□□ 0.01
CLK3-215ENST00000564353 MTIF2P46199 727 aaKnown RBP15.12■□□□□ 0.01
CLK3-215ENST00000564353 IRX5P78411 483 aaPredicted RBP15.12■□□□□ 0.01
CLK3-215ENST00000564353 ARL6IP4Q66PJ3 421 aaKnown RBP15.12■□□□□ 0.01
CLK3-215ENST00000564353 KRT26Q7Z3Y9 468 aa15.12■□□□□ 0.01
CLK3-215ENST00000564353 TUBGCP2Q9BSJ2 902 aa15.12■□□□□ 0.01
CLK3-215ENST00000564353 NAA15Q9BXJ9 866 aaKnown RBP15.12■□□□□ 0.01
CLK3-215ENST00000564353 RTFDC1Q9BY42 306 aaPredicted RBP15.12■□□□□ 0.01
CLK3-215ENST00000564353 TCP11L1Q9NUJ3 509 aa15.12■□□□□ 0.01
CLK3-215ENST00000564353 PSMA7O14818 248 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 SLC16A2P36021 539 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 VSNL1P62760 191 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 RAD51AP2Q09MP3 1159 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 WDR59Q6PJI9 974 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 WDR66Q8TBY9 1149 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 RABGGTAQ92696 567 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 RPGRQ92834 1020 aaKnown RBP15.11■□□□□ 0.01
CLK3-215ENST00000564353 NAPGQ99747 312 aaPredicted RBP15.11■□□□□ 0.01
CLK3-215ENST00000564353 FUT8Q9BYC5 575 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 KANSL2Q9H9L4 492 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 ABCB6Q9NP58 842 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 A0A1B0GUL6 1792 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 FAM170AA1A519 330 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 PALM3A6NDB9 673 aaPredicted RBP15.11■□□□□ 0.01
CLK3-215ENST00000564353 ZNF185O15231 689 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 TDP2O95551 362 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 ATP1A1P05023 1023 aaKnown RBP15.11■□□□□ 0.01
CLK3-215ENST00000564353 TBC1D8BQ0IIM8 1120 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 UBE2SQ16763 222 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 CCDC122Q5T0U0 273 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 FNBP4Q8N3X1 1017 aaPredicted RBP15.11■□□□□ 0.01
CLK3-215ENST00000564353 CCDC155Q8N6L0 562 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 DUSP9Q99956 384 aaKnown RBP15.11■□□□□ 0.01
CLK3-215ENST00000564353 NUDT12Q9BQG2 462 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 LACRTQ9GZZ8 138 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 PDE11AQ9HCR9 933 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 EXOC1Q9NV70 894 aa15.11■□□□□ 0.01
CLK3-215ENST00000564353 LRRC10BA6NIK2 292 aa15.1■□□□□ 0.01
CLK3-215ENST00000564353 OR52Z1P0C646 297 aa15.1■□□□□ 0.01
CLK3-215ENST00000564353 GRAPQ13588 217 aa15.1■□□□□ 0.01
CLK3-215ENST00000564353 TRAPPC3LQ5T215 181 aa15.1■□□□□ 0.01
CLK3-215ENST00000564353 GSPT2Q8IYD1 628 aaKnown RBP15.1■□□□□ 0.01
CLK3-215ENST00000564353 GRAPLQ8TC17 118 aaPredicted RBP15.1■□□□□ 0.01
CLK3-215ENST00000564353 CD209Q9NNX6 404 aa15.1■□□□□ 0.01
CLK3-215ENST00000564353 FAM207AQ9NSI2 230 aaPredicted RBP15.1■□□□□ 0.01
CLK3-215ENST00000564353 TBC1D7Q9P0N9 293 aa15.1■□□□□ 0.01
CLK3-215ENST00000564353 CNTNAP4Q9C0A0 1308 aa15.1■□□□□ 0.01
CLK3-215ENST00000564353 H7C1D1 291 aa15.1■□□□□ 0.01
CLK3-215ENST00000564353 SLC37A4O43826 429 aa15.1■□□□□ 0.01
CLK3-215ENST00000564353 HERVK_113P62684 666 aa15.1■□□□□ 0.01
CLK3-215ENST00000564353 CACNB1Q02641 598 aaPredicted RBP15.1■□□□□ 0.01
CLK3-215ENST00000564353 KCTD19Q17RG1 926 aaPredicted RBP15.1■□□□□ 0.01
CLK3-215ENST00000564353 FKBP15Q5T1M5 1219 aa15.1■□□□□ 0.01
CLK3-215ENST00000564353 SOGA3Q5TF21 947 aa15.1■□□□□ 0.01
CLK3-215ENST00000564353 TTI2Q6NXR4 508 aa15.1■□□□□ 0.01
CLK3-215ENST00000564353 ZNF804AQ7Z570 1209 aa15.1■□□□□ 0.01
CLK3-215ENST00000564353 KIAA1328Q86T90 577 aa15.1■□□□□ 0.01
CLK3-215ENST00000564353 CCDC148Q8NFR7 591 aa15.1■□□□□ 0.01
CLK3-215ENST00000564353 OR8K1Q8NGG5 319 aa15.1■□□□□ 0.01
CLK3-215ENST00000564353 CNOT6LQ96LI5 555 aaKnown RBP15.1■□□□□ 0.01
CLK3-215ENST00000564353 SEC63Q9UGP8 760 aaKnown RBP15.1■□□□□ 0.01
CLK3-215ENST00000564353 TTF2Q9UNY4 1162 aaKnown RBP15.1■□□□□ 0.01
CLK3-215ENST00000564353 MYH8P13535 1937 aa15.1■□□□□ 0.01
CLK3-215ENST00000564353 FAM196BA6NMK8 535 aa15.09■□□□□ 0.01
CLK3-215ENST00000564353 LGALS16A8MUM7 142 aa15.09■□□□□ 0.01
CLK3-215ENST00000564353 SSBP05455 408 aaKnown RBP eCLIP15.09■□□□□ 0.01
CLK3-215ENST00000564353 TNNI2P48788 182 aa15.09■□□□□ 0.01
CLK3-215ENST00000564353 SPAG1Q07617 926 aa15.09■□□□□ 0.01
CLK3-215ENST00000564353 NONOQ15233 471 aaKnown RBP eCLIP15.09■□□□□ 0.01
CLK3-215ENST00000564353 TRIM9Q9C026 710 aa15.09■□□□□ 0.01
CLK3-215ENST00000564353 KBTBD4Q9NVX7 518 aa15.09■□□□□ 0.01
CLK3-215ENST00000564353 FLT1P17948 1338 aa15.09■□□□□ 0.01
CLK3-215ENST00000564353 IRS2Q9Y4H2 1338 aa15.09■□□□□ 0.01
CLK3-215ENST00000564353 RASSF10A6NK89 507 aa15.09■□□□□ 0.01
CLK3-215ENST00000564353 EPHB6O15197 1021 aa15.09■□□□□ 0.01
CLK3-215ENST00000564353 SCNN1DP51172 638 aa15.09■□□□□ 0.01
CLK3-215ENST00000564353 GTF2IP78347 998 aa15.09■□□□□ 0.01
CLK3-215ENST00000564353 STIM1Q13586 685 aa15.09■□□□□ 0.01
CLK3-215ENST00000564353 SHROOM1Q2M3G4 852 aaPredicted RBP15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms