RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 EEPD1Q7L9B9 569 aa19.96■□□□□ 0.79
CLN3-211ENST00000564091 FAM126BQ8IXS8 530 aa19.96■□□□□ 0.79
CLN3-211ENST00000564091 PURBQ96QR8 312 aaKnown RBP19.96■□□□□ 0.79
CLN3-211ENST00000564091 PPP1R12CQ9BZL4 782 aa19.96■□□□□ 0.79
CLN3-211ENST00000564091 PDGFCQ9NRA1 345 aa19.96■□□□□ 0.79
CLN3-211ENST00000564091 GNEQ9Y223 722 aaKnown RBP19.96■□□□□ 0.79
CLN3-211ENST00000564091 ZNFX1Q9P2E3 1918 aaKnown RBP19.96■□□□□ 0.79
CLN3-211ENST00000564091 DYNC1LI2O43237 492 aaPredicted RBP19.95■□□□□ 0.78
CLN3-211ENST00000564091 CSF2RAP15509 400 aa19.95■□□□□ 0.78
CLN3-211ENST00000564091 SMPD1P17405 629 aa19.95■□□□□ 0.78
CLN3-211ENST00000564091 NKX3-2P78367 333 aa19.95■□□□□ 0.78
CLN3-211ENST00000564091 GRIN2CQ14957 1233 aa19.95■□□□□ 0.78
CLN3-211ENST00000564091 CCDC96Q2M329 555 aa19.95■□□□□ 0.78
CLN3-211ENST00000564091 TMEM63BQ5T3F8 832 aa19.95■□□□□ 0.78
CLN3-211ENST00000564091 TTBK2Q6IQ55 1244 aa19.95■□□□□ 0.78
CLN3-211ENST00000564091 EVI5LQ96CN4 794 aa19.95■□□□□ 0.78
CLN3-211ENST00000564091 CYP39A1Q9NYL5 469 aa19.95■□□□□ 0.78
CLN3-211ENST00000564091 ZBTB47Q9UFB7 747 aaPredicted RBP19.95■□□□□ 0.78
CLN3-211ENST00000564091 ANAPC4Q9UJX5 808 aa19.95■□□□□ 0.78
CLN3-211ENST00000564091 CCPG1Q9ULG6 757 aa19.95■□□□□ 0.78
CLN3-211ENST00000564091 ACRP10323 421 aa19.94■□□□□ 0.78
CLN3-211ENST00000564091 DNAJB2P25686 324 aa19.94■□□□□ 0.78
CLN3-211ENST00000564091 SLC16A2P36021 539 aa19.94■□□□□ 0.78
CLN3-211ENST00000564091 NOVP48745 357 aa19.94■□□□□ 0.78
CLN3-211ENST00000564091 RRP1P56182 461 aaKnown RBP19.94■□□□□ 0.78
CLN3-211ENST00000564091 PPIGQ13427 754 aaKnown RBP eCLIP19.94■□□□□ 0.786e-7■□□□□ 10.9
CLN3-211ENST00000564091 TMEM240Q5SV17 173 aa19.94■□□□□ 0.78
CLN3-211ENST00000564091 NSMFQ6X4W1 530 aa19.94■□□□□ 0.78
CLN3-211ENST00000564091 TLK2Q86UE8 772 aa19.94■□□□□ 0.78
CLN3-211ENST00000564091 FBXO16Q8IX29 292 aaPredicted RBP19.94■□□□□ 0.78
CLN3-211ENST00000564091 FAM227BQ96M60 508 aa19.94■□□□□ 0.78
CLN3-211ENST00000564091 TOMM22Q9NS69 142 aa19.94■□□□□ 0.78
CLN3-211ENST00000564091 TMEM265A0A087WTH1 108 aa19.93■□□□□ 0.78
CLN3-211ENST00000564091 GRXCR1A8MXD5 290 aa19.93■□□□□ 0.78
CLN3-211ENST00000564091 TLR3O15455 904 aaKnown RBP19.93■□□□□ 0.78
CLN3-211ENST00000564091 ORC4O43929 436 aa19.93■□□□□ 0.78
CLN3-211ENST00000564091 CYP2C18P33260 490 aa19.93■□□□□ 0.78
CLN3-211ENST00000564091 FSCN1Q16658 493 aaKnown RBP19.93■□□□□ 0.78
CLN3-211ENST00000564091 RRP12Q5JTH9 1297 aaKnown RBP19.93■□□□□ 0.78
CLN3-211ENST00000564091 TAPT1Q6NXT6 567 aa19.93■□□□□ 0.78
CLN3-211ENST00000564091 TMEM199Q8N511 208 aa19.93■□□□□ 0.78
CLN3-211ENST00000564091 CRBNQ96SW2 442 aa19.93■□□□□ 0.78
CLN3-211ENST00000564091 AP5M1Q9H0R1 490 aa19.93■□□□□ 0.78
CLN3-211ENST00000564091 HELLSQ9NRZ9 838 aa19.93■□□□□ 0.78
CLN3-211ENST00000564091 CD4P01730 458 aa19.92■□□□□ 0.78
CLN3-211ENST00000564091 FGAP02671 866 aa19.92■□□□□ 0.78
CLN3-211ENST00000564091 FGRP09769 529 aa19.92■□□□□ 0.78
CLN3-211ENST00000564091 PDE1AP54750 535 aa19.92■□□□□ 0.78
CLN3-211ENST00000564091 ALX1Q15699 326 aa19.92■□□□□ 0.78
CLN3-211ENST00000564091 ZNF365Q70YC5 407 aa19.92■□□□□ 0.78
CLN3-211ENST00000564091 DCAF4Q8WV16 495 aa19.92■□□□□ 0.78
CLN3-211ENST00000564091 TIFAQ96CG3 184 aa19.92■□□□□ 0.78
CLN3-211ENST00000564091 GRIN2DO15399 1336 aa19.92■□□□□ 0.78
CLN3-211ENST00000564091 A0A0D9SFI3 127 aa19.91■□□□□ 0.78
CLN3-211ENST00000564091 ICAM1P05362 532 aa19.91■□□□□ 0.78
CLN3-211ENST00000564091 PBX2P40425 430 aa19.91■□□□□ 0.78
CLN3-211ENST00000564091 ITGA7Q13683 1181 aa19.91■□□□□ 0.78
CLN3-211ENST00000564091 BAATQ14032 418 aaPredicted RBP19.91■□□□□ 0.78
CLN3-211ENST00000564091 IQSEC1Q6DN90 963 aa19.91■□□□□ 0.78
CLN3-211ENST00000564091 SLC43A3Q8NBI5 491 aa19.91■□□□□ 0.78
CLN3-211ENST00000564091 TMEM47Q9BQJ4 181 aa19.91■□□□□ 0.78
CLN3-211ENST00000564091 RANBP17Q9H2T7 1088 aaKnown RBP19.91■□□□□ 0.78
CLN3-211ENST00000564091 ZNF576Q9H609 170 aa19.91■□□□□ 0.78
CLN3-211ENST00000564091 GPCPD1Q9NPB8 672 aa19.91■□□□□ 0.78
CLN3-211ENST00000564091 FRMPD2Q68DX3 1309 aaPredicted RBP19.91■□□□□ 0.78
CLN3-211ENST00000564091 PLXNA1Q9UIW2 1896 aa19.9■□□□□ 0.78
CLN3-211ENST00000564091 CABYRO75952 493 aa19.9■□□□□ 0.78
CLN3-211ENST00000564091 PSMC6P62333 389 aa19.9■□□□□ 0.78
CLN3-211ENST00000564091 MCMDC2Q4G0Z9 681 aa19.9■□□□□ 0.78
CLN3-211ENST00000564091 RASIP1Q5U651 963 aa19.9■□□□□ 0.78
CLN3-211ENST00000564091 SYDE2Q5VT97 1194 aa19.9■□□□□ 0.78
CLN3-211ENST00000564091 KIAA1211Q6ZU35 1233 aa19.9■□□□□ 0.78
CLN3-211ENST00000564091 PBX4Q9BYU1 374 aa19.9■□□□□ 0.78
CLN3-211ENST00000564091 NFIBO00712 420 aa19.89■□□□□ 0.77
CLN3-211ENST00000564091 ZEB2O60315 1214 aa19.89■□□□□ 0.77
CLN3-211ENST00000564091 TOP1P11387 765 aaKnown RBP19.89■□□□□ 0.77
CLN3-211ENST00000564091 HAND2P61296 217 aa19.89■□□□□ 0.77
CLN3-211ENST00000564091 UMODL1Q5DID0 1318 aa19.89■□□□□ 0.77
CLN3-211ENST00000564091 BTNL9Q6UXG8 535 aa19.89■□□□□ 0.77
CLN3-211ENST00000564091 ZNF589Q86UQ0 364 aaPredicted RBP19.89■□□□□ 0.77
CLN3-211ENST00000564091 TRPV6Q9H1D0 765 aa19.89■□□□□ 0.77
CLN3-211ENST00000564091 HSPD1P10809 573 aaKnown RBP19.88■□□□□ 0.77
CLN3-211ENST00000564091 CCL23P55773 120 aa19.88■□□□□ 0.77
CLN3-211ENST00000564091 NMIQ13287 307 aaPredicted RBP19.88■□□□□ 0.77
CLN3-211ENST00000564091 PSRC1Q6PGN9 363 aaPredicted RBP19.88■□□□□ 0.77
CLN3-211ENST00000564091 USP38Q8NB14 1042 aa19.88■□□□□ 0.77
CLN3-211ENST00000564091 MORC4Q8TE76 937 aa19.88■□□□□ 0.77
CLN3-211ENST00000564091 HIPK3Q9H422 1215 aa19.88■□□□□ 0.77
CLN3-211ENST00000564091 VTA1Q9NP79 307 aa19.88■□□□□ 0.77
CLN3-211ENST00000564091 IL23AQ9NPF7 189 aa19.88■□□□□ 0.77
CLN3-211ENST00000564091 TCP11L1Q9NUJ3 509 aa19.88■□□□□ 0.77
CLN3-211ENST00000564091 CXXC1Q9P0U4 656 aaPredicted RBP19.88■□□□□ 0.77
CLN3-211ENST00000564091 Q9Y3F1 56 aa19.88■□□□□ 0.77
CLN3-211ENST00000564091 PTPDC1A2A3K4 754 aa19.87■□□□□ 0.77
CLN3-211ENST00000564091 ALDH5A1P51649 535 aaPredicted RBP19.87■□□□□ 0.77
CLN3-211ENST00000564091 HDAC1Q13547 482 aaPredicted RBP19.87■□□□□ 0.77
CLN3-211ENST00000564091 ADD3Q9UEY8 706 aaKnown RBP19.87■□□□□ 0.77
CLN3-211ENST00000564091 TTC28Q96AY4 2481 aa19.87■□□□□ 0.77
CLN3-211ENST00000564091 B4GALT4O60513 344 aa19.86■□□□□ 0.77
CLN3-211ENST00000564091 PDHBP11177 359 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms