RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 REXO1Q8N1G1 1221 aaKnown RBP15.54■□□□□ 0.08
VPS39-206ENST00000562662 CUL5Q93034 780 aa15.54■□□□□ 0.08
VPS39-206ENST00000562662 SPATA32Q96LK8 384 aa15.54■□□□□ 0.08
VPS39-206ENST00000562662 GLT8D2Q9H1C3 349 aa15.54■□□□□ 0.08
VPS39-206ENST00000562662 ABCB11O95342 1321 aa15.53■□□□□ 0.08
VPS39-206ENST00000562662 CCDC194A0A1B0GVG4 234 aa15.53■□□□□ 0.08
VPS39-206ENST00000562662 SPDYE16A6NNV3 312 aaPredicted RBP15.53■□□□□ 0.08
VPS39-206ENST00000562662 VWA5AO00534 786 aa15.53■□□□□ 0.08
VPS39-206ENST00000562662 WNT7AO00755 349 aa15.53■□□□□ 0.08
VPS39-206ENST00000562662 ZBED4O75132 1171 aa15.53■□□□□ 0.08
VPS39-206ENST00000562662 GADD45BO75293 160 aaPredicted RBP15.53■□□□□ 0.08
VPS39-206ENST00000562662 YEATS4O95619 227 aa15.53■□□□□ 0.08
VPS39-206ENST00000562662 HOXA7P31268 230 aaPredicted RBP15.53■□□□□ 0.08
VPS39-206ENST00000562662 MRPL12P52815 198 aaKnown RBP15.53■□□□□ 0.08
VPS39-206ENST00000562662 NBR1Q14596 966 aa15.53■□□□□ 0.08
VPS39-206ENST00000562662 COG2Q14746 738 aa15.53■□□□□ 0.08
VPS39-206ENST00000562662 PTPAQ15257 358 aa15.53■□□□□ 0.08
VPS39-206ENST00000562662 SF3A1Q15459 793 aaKnown RBP15.53■□□□□ 0.08
VPS39-206ENST00000562662 UBE2SQ16763 222 aa15.53■□□□□ 0.08
VPS39-206ENST00000562662 KRT25Q7Z3Z0 450 aa15.53■□□□□ 0.08
VPS39-206ENST00000562662 LINC00301Q8NCQ3 95 aa15.53■□□□□ 0.08
VPS39-206ENST00000562662 PSTPIP2Q9H939 334 aa15.53■□□□□ 0.08
VPS39-206ENST00000562662 TMEM260Q9NX78 707 aa15.53■□□□□ 0.08
VPS39-206ENST00000562662 BIN2Q9UBW5 565 aaPredicted RBP15.53■□□□□ 0.08
VPS39-206ENST00000562662 NOL7Q9UMY1 257 aaKnown RBP15.53■□□□□ 0.08
VPS39-206ENST00000562662 MEIS2O14770 477 aa15.52■□□□□ 0.08
VPS39-206ENST00000562662 TRAPPC10P48553 1259 aa15.52■□□□□ 0.08
VPS39-206ENST00000562662 SNAPC2Q13487 334 aa15.52■□□□□ 0.08
VPS39-206ENST00000562662 JAKMIP3Q5VZ66 844 aa15.52■□□□□ 0.08
VPS39-206ENST00000562662 GPAT2Q6NUI2 795 aa15.52■□□□□ 0.08
VPS39-206ENST00000562662 AGBL1Q96MI9 1066 aa15.52■□□□□ 0.08
VPS39-206ENST00000562662 RAVER2Q9HCJ3 691 aaKnown RBP15.52■□□□□ 0.08
VPS39-206ENST00000562662 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.52■□□□□ 0.08
VPS39-206ENST00000562662 CCPG1Q9ULG6 757 aa15.52■□□□□ 0.08
VPS39-206ENST00000562662 AGTPBP1Q9UPW5 1226 aa15.52■□□□□ 0.08
VPS39-206ENST00000562662 MRPL11Q9Y3B7 192 aaKnown RBP15.52■□□□□ 0.08
VPS39-206ENST00000562662 PCDHB6Q9Y5E3 794 aa15.52■□□□□ 0.08
VPS39-206ENST00000562662 SLC39A14Q15043 492 aa15.51■□□□□ 0.07
VPS39-206ENST00000562662 STK38Q15208 465 aa15.51■□□□□ 0.07
VPS39-206ENST00000562662 NONOQ15233 471 aaKnown RBP eCLIP15.51■□□□□ 0.07
VPS39-206ENST00000562662 INF2Q27J81 1249 aa15.51■□□□□ 0.07
VPS39-206ENST00000562662 TTC38Q5R3I4 469 aa15.51■□□□□ 0.07
VPS39-206ENST00000562662 USP17L6PQ6QN14 398 aa15.51■□□□□ 0.07
VPS39-206ENST00000562662 FASTKD5Q7L8L6 764 aaKnown RBP15.51■□□□□ 0.07
VPS39-206ENST00000562662 TEX2Q8IWB9 1127 aa15.51■□□□□ 0.07
VPS39-206ENST00000562662 MS4A4AQ96JQ5 239 aa15.51■□□□□ 0.07
VPS39-206ENST00000562662 PGBD1Q96JS3 809 aa15.51■□□□□ 0.07
VPS39-206ENST00000562662 HOXC10Q9NYD6 342 aa15.51■□□□□ 0.07
VPS39-206ENST00000562662 LCTP09848 1927 aa15.51■□□□□ 0.07
VPS39-206ENST00000562662 PIK3CDO00329 1044 aa15.5■□□□□ 0.07
VPS39-206ENST00000562662 ATP2A1O14983 1001 aa15.5■□□□□ 0.07
VPS39-206ENST00000562662 SPTLC2O15270 562 aa15.5■□□□□ 0.07
VPS39-206ENST00000562662 ZBTB48P10074 688 aaPredicted RBP15.5■□□□□ 0.07
VPS39-206ENST00000562662 ATP2B1P20020 1258 aa15.5■□□□□ 0.07
VPS39-206ENST00000562662 OAZ1P54368 228 aa15.5■□□□□ 0.07
VPS39-206ENST00000562662 HUNKP57058 714 aa15.5■□□□□ 0.07
VPS39-206ENST00000562662 SPRYD7Q5W111 196 aa15.5■□□□□ 0.07
VPS39-206ENST00000562662 POTEEQ6S8J3 1075 aa15.5■□□□□ 0.07
VPS39-206ENST00000562662 LBX2Q6XYB7 198 aa15.5■□□□□ 0.07
VPS39-206ENST00000562662 CPXCR1Q8N123 301 aa15.5■□□□□ 0.07
VPS39-206ENST00000562662 SMC1BQ8NDV3 1235 aa15.5■□□□□ 0.07
VPS39-206ENST00000562662 P2RX7Q99572 595 aaKnown RBP15.5■□□□□ 0.07
VPS39-206ENST00000562662 PNMA2Q9UL42 364 aa15.5■□□□□ 0.07
VPS39-206ENST00000562662 ZNF214Q9UL59 606 aaPredicted RBP15.5■□□□□ 0.07
VPS39-206ENST00000562662 CTDP1Q9Y5B0 961 aaPredicted RBP15.5■□□□□ 0.07
VPS39-206ENST00000562662 MORC2Q9Y6X9 1032 aaPredicted RBP15.5■□□□□ 0.07
VPS39-206ENST00000562662 EDIL3O43854 480 aa15.49■□□□□ 0.07
VPS39-206ENST00000562662 GTF2A2P52657 109 aa15.49■□□□□ 0.07
VPS39-206ENST00000562662 UBE2HP62256 183 aa15.49■□□□□ 0.07
VPS39-206ENST00000562662 GHRHRQ02643 423 aa15.49■□□□□ 0.07
VPS39-206ENST00000562662 AP3B2Q13367 1082 aa15.49■□□□□ 0.07
VPS39-206ENST00000562662 TMEM132BQ14DG7 1078 aa15.49■□□□□ 0.07
VPS39-206ENST00000562662 GPT2Q8TD30 523 aa15.49■□□□□ 0.07
VPS39-206ENST00000562662 KCNG4Q8TDN1 519 aa15.49■□□□□ 0.07
VPS39-206ENST00000562662 TBCKQ8TEA7 893 aa15.49■□□□□ 0.07
VPS39-206ENST00000562662 CLEC4DQ8WXI8 215 aa15.49■□□□□ 0.07
VPS39-206ENST00000562662 TBC1D5Q92609 795 aa15.49■□□□□ 0.07
VPS39-206ENST00000562662 ASCC2Q9H1I8 757 aaPredicted RBP15.49■□□□□ 0.07
VPS39-206ENST00000562662 TRAK2O60296 914 aa15.48■□□□□ 0.07
VPS39-206ENST00000562662 PPP6R2O75170 966 aa15.48■□□□□ 0.07
VPS39-206ENST00000562662 CETPP11597 493 aa15.48■□□□□ 0.07
VPS39-206ENST00000562662 ALAS1P13196 640 aa15.48■□□□□ 0.07
VPS39-206ENST00000562662 IRX3P78415 501 aaPredicted RBP15.48■□□□□ 0.07
VPS39-206ENST00000562662 PABPC4Q13310 644 aaKnown RBP eCLIP15.48■□□□□ 0.07
VPS39-206ENST00000562662 ZNF174Q15697 407 aa15.48■□□□□ 0.07
VPS39-206ENST00000562662 SKOR2Q2VWA4 1001 aaPredicted RBP15.48■□□□□ 0.07
VPS39-206ENST00000562662 MCTP2Q6DN12 878 aa15.48■□□□□ 0.07
VPS39-206ENST00000562662 NEK8Q86SG6 692 aa15.48■□□□□ 0.07
VPS39-206ENST00000562662 SAPCD2Q86UD0 394 aa15.48■□□□□ 0.07
VPS39-206ENST00000562662 RASAL3Q86YV0 1011 aa15.48■□□□□ 0.07
VPS39-206ENST00000562662 ANO3Q9BYT9 981 aa15.48■□□□□ 0.07
VPS39-206ENST00000562662 PCDHA7Q9UN72 937 aa15.48■□□□□ 0.07
VPS39-206ENST00000562662 CEP131Q9UPN4 1083 aa15.48■□□□□ 0.07
VPS39-206ENST00000562662 CCL15-CCL14A0A0B4J2E2 113 aa15.47■□□□□ 0.07
VPS39-206ENST00000562662 GCOM1H8Y6P7 765 aaPredicted RBP15.47■□□□□ 0.07
VPS39-206ENST00000562662 NFIBO00712 420 aa15.47■□□□□ 0.07
VPS39-206ENST00000562662 BMP15O95972 392 aa15.47■□□□□ 0.07
VPS39-206ENST00000562662 MBD3O95983 291 aa15.47■□□□□ 0.07
VPS39-206ENST00000562662 CFBP00751 764 aa15.47■□□□□ 0.07
VPS39-206ENST00000562662 POLR2MP0CAP2 368 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms