RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 HELLSQ9NRZ9 838 aa22.48■■□□□ 1.19
VPS35-202ENST00000561713 TOMM22Q9NS69 142 aa22.48■■□□□ 1.19
VPS35-202ENST00000561713 SYNPO2Q9UMS6 1093 aa22.48■■□□□ 1.19
VPS35-202ENST00000561713 A0A0U1RQG5 324 aaPredicted RBP22.47■■□□□ 1.19
VPS35-202ENST00000561713 CTAGE5O15320 804 aa22.47■■□□□ 1.19
VPS35-202ENST00000561713 ACRP10323 421 aa22.47■■□□□ 1.19
VPS35-202ENST00000561713 SLC1A4P43007 532 aa22.47■■□□□ 1.19
VPS35-202ENST00000561713 STAT2P52630 851 aa22.47■■□□□ 1.19
VPS35-202ENST00000561713 HAND2P61296 217 aa22.47■■□□□ 1.19
VPS35-202ENST00000561713 RASIP1Q5U651 963 aa22.47■■□□□ 1.19
VPS35-202ENST00000561713 CHST13Q8NET6 341 aa22.47■■□□□ 1.19
VPS35-202ENST00000561713 RILPL2Q969X0 211 aa22.47■■□□□ 1.19
VPS35-202ENST00000561713 PPP1R12CQ9BZL4 782 aa22.47■■□□□ 1.19
VPS35-202ENST00000561713 KATNBL1Q9H079 304 aa22.47■■□□□ 1.19
VPS35-202ENST00000561713 FBXO40Q9UH90 709 aa22.47■■□□□ 1.19
VPS35-202ENST00000561713 CHD7Q9P2D1 2997 aa22.46■■□□□ 1.19
VPS35-202ENST00000561713 IGHDP01880 384 aa22.46■■□□□ 1.19
VPS35-202ENST00000561713 CNTN2Q02246 1040 aa22.46■■□□□ 1.19
VPS35-202ENST00000561713 TJAP1Q5JTD0 557 aa22.46■■□□□ 1.19
VPS35-202ENST00000561713 CCDC174Q6PII3 467 aa22.46■■□□□ 1.19
VPS35-202ENST00000561713 ZNF365Q70YC5 407 aa22.46■■□□□ 1.19
VPS35-202ENST00000561713 FAM126BQ8IXS8 530 aa22.46■■□□□ 1.19
VPS35-202ENST00000561713 SMC5Q8IY18 1101 aa22.46■■□□□ 1.19
VPS35-202ENST00000561713 TMEM199Q8N511 208 aa22.46■■□□□ 1.19
VPS35-202ENST00000561713 GMCL1Q96IK5 515 aa22.46■■□□□ 1.19
VPS35-202ENST00000561713 AGBL1Q96MI9 1066 aa22.46■■□□□ 1.19
VPS35-202ENST00000561713 DDX49Q9Y6V7 483 aaKnown RBP22.46■■□□□ 1.19
VPS35-202ENST00000561713 OAZ1P54368 228 aa22.45■■□□□ 1.18
VPS35-202ENST00000561713 BEX3Q00994 111 aa22.45■■□□□ 1.18
VPS35-202ENST00000561713 CCDC96Q2M329 555 aa22.45■■□□□ 1.18
VPS35-202ENST00000561713 MCMDC2Q4G0Z9 681 aa22.45■■□□□ 1.18
VPS35-202ENST00000561713 PPM1EQ8WY54 764 aa22.45■■□□□ 1.18
VPS35-202ENST00000561713 PRDM12Q9H4Q4 367 aa22.45■■□□□ 1.18
VPS35-202ENST00000561713 RNF146Q9NTX7 359 aa22.45■■□□□ 1.18
VPS35-202ENST00000561713 ANAPC4Q9UJX5 808 aa22.45■■□□□ 1.18
VPS35-202ENST00000561713 ZNF536O15090 1300 aa22.45■■□□□ 1.18
VPS35-202ENST00000561713 CCDC171Q6TFL3 1326 aa22.45■■□□□ 1.18
VPS35-202ENST00000561713 XIRP2A4UGR9 3374 aa22.44■■□□□ 1.18
VPS35-202ENST00000561713 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.44■■□□□ 1.18
VPS35-202ENST00000561713 ORC4O43929 436 aa22.44■■□□□ 1.18
VPS35-202ENST00000561713 FGAP02671 866 aa22.44■■□□□ 1.18
VPS35-202ENST00000561713 HSPD1P10809 573 aaKnown RBP22.44■■□□□ 1.18
VPS35-202ENST00000561713 CYP2C18P33260 490 aa22.44■■□□□ 1.18
VPS35-202ENST00000561713 REV3LO60673 3130 aa22.43■■□□□ 1.18
VPS35-202ENST00000561713 ASTN1O14525 1302 aa22.43■■□□□ 1.18
VPS35-202ENST00000561713 TLR3O15455 904 aaKnown RBP22.43■■□□□ 1.18
VPS35-202ENST00000561713 CD4P01730 458 aa22.43■■□□□ 1.18
VPS35-202ENST00000561713 FAM160B2Q86V87 743 aa22.43■■□□□ 1.18
VPS35-202ENST00000561713 TBC1D10CQ8IV04 446 aa22.43■■□□□ 1.18
VPS35-202ENST00000561713 STAG1Q8WVM7 1258 aa22.43■■□□□ 1.18
VPS35-202ENST00000561713 GAS2L1Q99501 681 aaPredicted RBP22.43■■□□□ 1.18
VPS35-202ENST00000561713 ACAD9Q9H845 621 aa22.43■■□□□ 1.18
VPS35-202ENST00000561713 MYH6P13533 1939 aa22.43■■□□□ 1.18
VPS35-202ENST00000561713 FRMPD2Q68DX3 1309 aaPredicted RBP22.42■■□□□ 1.18
VPS35-202ENST00000561713 ALAS1P13196 640 aa22.42■■□□□ 1.18
VPS35-202ENST00000561713 PTGS1P23219 599 aa22.42■■□□□ 1.18
VPS35-202ENST00000561713 NKX3-2P78367 333 aa22.42■■□□□ 1.18
VPS35-202ENST00000561713 TNFAIP2Q03169 654 aa22.42■■□□□ 1.18
VPS35-202ENST00000561713 ALX1Q15699 326 aa22.42■■□□□ 1.18
VPS35-202ENST00000561713 TTBK2Q6IQ55 1244 aa22.42■■□□□ 1.18
VPS35-202ENST00000561713 PSRC1Q6PGN9 363 aaPredicted RBP22.42■■□□□ 1.18
VPS35-202ENST00000561713 CXCL17Q6UXB2 119 aa22.42■■□□□ 1.18
VPS35-202ENST00000561713 NOL8Q76FK4 1167 aaKnown RBP22.42■■□□□ 1.18
VPS35-202ENST00000561713 CHD1LQ86WJ1 897 aa22.42■■□□□ 1.18
VPS35-202ENST00000561713 PLEKHM2Q8IWE5 1019 aa22.42■■□□□ 1.18
VPS35-202ENST00000561713 FAM133AQ8N9E0 248 aa22.42■■□□□ 1.18
VPS35-202ENST00000561713 RWDD1Q9H446 243 aaPredicted RBP22.42■■□□□ 1.18
VPS35-202ENST00000561713 A1CFQ9NQ94 594 aaKnown RBP22.42■■□□□ 1.18
VPS35-202ENST00000561713 PRR12Q9ULL5 1215 aa22.42■■□□□ 1.18
VPS35-202ENST00000561713 NEDD4P46934 1319 aa22.41■■□□□ 1.18
VPS35-202ENST00000561713 SOWAHBA6NEL2 793 aa22.41■■□□□ 1.18
VPS35-202ENST00000561713 CHURC1Q8WUH1 139 aa22.41■■□□□ 1.18
VPS35-202ENST00000561713 IL23AQ9NPF7 189 aa22.41■■□□□ 1.18
VPS35-202ENST00000561713 CXXC1Q9P0U4 656 aaPredicted RBP22.41■■□□□ 1.18
VPS35-202ENST00000561713 ZMYM6O95789 1325 aa22.4■■□□□ 1.18
VPS35-202ENST00000561713 UMODL1Q5DID0 1318 aa22.4■■□□□ 1.18
VPS35-202ENST00000561713 TNFRSF10AO00220 468 aa22.4■■□□□ 1.18
VPS35-202ENST00000561713 SLC16A2P36021 539 aa22.4■■□□□ 1.18
VPS35-202ENST00000561713 MUM1L1Q5H9M0 696 aa22.4■■□□□ 1.18
VPS35-202ENST00000561713 SLC43A3Q8NBI5 491 aa22.4■■□□□ 1.18
VPS35-202ENST00000561713 HERVK_113Q902F9 699 aa22.4■■□□□ 1.18
VPS35-202ENST00000561713 GNEQ9Y223 722 aaKnown RBP22.4■■□□□ 1.18
VPS35-202ENST00000561713 FGRP09769 529 aa22.39■■□□□ 1.17
VPS35-202ENST00000561713 SDSP20132 328 aa22.39■■□□□ 1.17
VPS35-202ENST00000561713 NUCB1Q02818 461 aa22.39■■□□□ 1.17
VPS35-202ENST00000561713 ADGRE1Q14246 886 aa22.39■■□□□ 1.17
VPS35-202ENST00000561713 PPP4R3BQ5MIZ7 849 aa22.39■■□□□ 1.17
VPS35-202ENST00000561713 AKNAD1Q5T1N1 836 aa22.39■■□□□ 1.17
VPS35-202ENST00000561713 RCSD1Q6JBY9 416 aa22.39■■□□□ 1.17
VPS35-202ENST00000561713 TLK2Q86UE8 772 aa22.39■■□□□ 1.17
VPS35-202ENST00000561713 TRERF1Q96PN7 1200 aa22.39■■□□□ 1.17
VPS35-202ENST00000561713 TMEM47Q9BQJ4 181 aa22.39■■□□□ 1.17
VPS35-202ENST00000561713 HIPK3Q9H422 1215 aa22.39■■□□□ 1.17
VPS35-202ENST00000561713 GPCPD1Q9NPB8 672 aa22.39■■□□□ 1.17
VPS35-202ENST00000561713 MSRAQ9UJ68 235 aa22.39■■□□□ 1.17
VPS35-202ENST00000561713 CCPG1Q9ULG6 757 aa22.39■■□□□ 1.17
VPS35-202ENST00000561713 GRIN2DO15399 1336 aa22.38■■□□□ 1.17
VPS35-202ENST00000561713 FDX1P10109 184 aa22.38■■□□□ 1.17
VPS35-202ENST00000561713 NOVP48745 357 aa22.38■■□□□ 1.17
VPS35-202ENST00000561713 ITGA7Q13683 1181 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms