RNA–Protein interactions for RNA: ENST00000561242.1

TPM1-229, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-229ENST00000561242 SH2B1Q9NRF2 756 aaPredicted RBP12.36□□□□□ -0.43
TPM1-229ENST00000561242 MAP3K20Q9NYL2 800 aaKnown RBP12.36□□□□□ -0.43
TPM1-229ENST00000561242 V9GY48 417 aaPredicted RBP12.36□□□□□ -0.43
TPM1-229ENST00000561242 FOCADQ5VW36 1801 aa12.36□□□□□ -0.43
TPM1-229ENST00000561242 hCG_1984214I3L0E3 225 aa12.35□□□□□ -0.43
TPM1-229ENST00000561242 XRCC5P13010 732 aaKnown RBP12.35□□□□□ -0.43
TPM1-229ENST00000561242 GNA11P29992 359 aa12.35□□□□□ -0.43
TPM1-229ENST00000561242 RBM25P49756 843 aaKnown RBP12.35□□□□□ -0.43
TPM1-229ENST00000561242 NAPAP54920 295 aa12.35□□□□□ -0.43
TPM1-229ENST00000561242 GNL2Q13823 731 aaKnown RBP12.35□□□□□ -0.43
TPM1-229ENST00000561242 ARHGEF16Q5VV41 709 aa12.35□□□□□ -0.43
TPM1-229ENST00000561242 MCTP2Q6DN12 878 aa12.35□□□□□ -0.43
TPM1-229ENST00000561242 TMTC3Q6ZXV5 915 aa12.35□□□□□ -0.43
TPM1-229ENST00000561242 FBXL16Q8N461 479 aa12.35□□□□□ -0.43
TPM1-229ENST00000561242 ZNF713Q8N859 430 aaPredicted RBP12.35□□□□□ -0.43
TPM1-229ENST00000561242 CCDC148Q8NFR7 591 aa12.35□□□□□ -0.43
TPM1-229ENST00000561242 NKX2-3Q8TAU0 364 aa12.35□□□□□ -0.43
TPM1-229ENST00000561242 PXYLP1Q8TE99 480 aa12.35□□□□□ -0.43
TPM1-229ENST00000561242 ARHGAP39Q9C0H5 1083 aa12.35□□□□□ -0.43
TPM1-229ENST00000561242 ALDH8A1Q9H2A2 487 aaPredicted RBP12.35□□□□□ -0.43
TPM1-229ENST00000561242 SPC25Q9HBM1 224 aa12.35□□□□□ -0.43
TPM1-229ENST00000561242 C6orf50Q9HD87 102 aa12.35□□□□□ -0.43
TPM1-229ENST00000561242 GPHNQ9NQX3 736 aaPredicted RBP12.35□□□□□ -0.43
TPM1-229ENST00000561242 DIS3Q9Y2L1 958 aaKnown RBP12.35□□□□□ -0.43
TPM1-229ENST00000561242 DDX60LQ5H9U9 1706 aaKnown RBP12.34□□□□□ -0.43
TPM1-229ENST00000561242 SPDYE3A6NKU9 549 aa12.34□□□□□ -0.43
TPM1-229ENST00000561242 CNMDO75829 334 aa12.34□□□□□ -0.43
TPM1-229ENST00000561242 MYCP01106 439 aaPredicted RBP12.34□□□□□ -0.43
TPM1-229ENST00000561242 HMGCRP04035 888 aa12.34□□□□□ -0.43
TPM1-229ENST00000561242 PDIA3P30101 505 aaKnown RBP12.34□□□□□ -0.43
TPM1-229ENST00000561242 AK2P54819 239 aa12.34□□□□□ -0.43
TPM1-229ENST00000561242 PDE4DQ08499 809 aa12.34□□□□□ -0.43
TPM1-229ENST00000561242 RIOX1Q9H6W3 641 aa12.34□□□□□ -0.43
TPM1-229ENST00000561242 HMX1Q9NP08 348 aaPredicted RBP12.34□□□□□ -0.43
TPM1-229ENST00000561242 ZNF214Q9UL59 606 aaPredicted RBP12.34□□□□□ -0.43
TPM1-229ENST00000561242 BRPF3Q9ULD4 1205 aa12.34□□□□□ -0.43
TPM1-229ENST00000561242 PTCH2Q9Y6C5 1203 aa12.34□□□□□ -0.43
TPM1-229ENST00000561242 ADGRA2Q96PE1 1338 aa12.34□□□□□ -0.43
TPM1-229ENST00000561242 CAPN2P17655 700 aa12.33□□□□□ -0.44
TPM1-229ENST00000561242 ADD1P35611 737 aaKnown RBP12.33□□□□□ -0.44
TPM1-229ENST00000561242 NLRP5P59047 1200 aa12.33□□□□□ -0.44
TPM1-229ENST00000561242 GRB14Q14449 540 aa12.33□□□□□ -0.44
TPM1-229ENST00000561242 SAFBQ15424 915 aaKnown RBP eCLIP12.33□□□□□ -0.44
TPM1-229ENST00000561242 MSL3Q8N5Y2 521 aaKnown RBP12.33□□□□□ -0.44
TPM1-229ENST00000561242 RGS22Q8NE09 1264 aa12.33□□□□□ -0.44
TPM1-229ENST00000561242 LARP6Q9BRS8 491 aaKnown RBP12.33□□□□□ -0.44
TPM1-229ENST00000561242 RNF208Q9H0X6 261 aa12.33□□□□□ -0.44
TPM1-229ENST00000561242 CPVLQ9H3G5 476 aa12.33□□□□□ -0.44
TPM1-229ENST00000561242 PSTPIP2Q9H939 334 aa12.33□□□□□ -0.44
TPM1-229ENST00000561242 SENP2Q9HC62 589 aa12.33□□□□□ -0.44
TPM1-229ENST00000561242 GABRQQ9UN88 632 aa12.33□□□□□ -0.44
TPM1-229ENST00000561242 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.33□□□□□ -0.44
TPM1-229ENST00000561242 PRPF3O43395 683 aaKnown RBP12.32□□□□□ -0.44
TPM1-229ENST00000561242 MSCO60682 206 aa12.32□□□□□ -0.44
TPM1-229ENST00000561242 PEX10O60683 326 aa12.32□□□□□ -0.44
TPM1-229ENST00000561242 PLEKHA8P1O95397 391 aa12.32□□□□□ -0.44
TPM1-229ENST00000561242 DEXIO95424 95 aa12.32□□□□□ -0.44
TPM1-229ENST00000561242 TFRCP02786 760 aaKnown RBP12.32□□□□□ -0.44
TPM1-229ENST00000561242 MYCNP04198 464 aaPredicted RBP12.32□□□□□ -0.44
TPM1-229ENST00000561242 PGK2P07205 417 aa12.32□□□□□ -0.44
TPM1-229ENST00000561242 ZNF76P36508 570 aa12.32□□□□□ -0.44
TPM1-229ENST00000561242 BAATQ14032 418 aaPredicted RBP12.32□□□□□ -0.44
TPM1-229ENST00000561242 BRDTQ58F21 947 aaPredicted RBP12.32□□□□□ -0.44
TPM1-229ENST00000561242 COL13A1Q5TAT6 717 aaPredicted RBP12.32□□□□□ -0.44
TPM1-229ENST00000561242 FCHSD1Q86WN1 690 aa12.32□□□□□ -0.44
TPM1-229ENST00000561242 HSCBQ8IWL3 235 aa12.32□□□□□ -0.44
TPM1-229ENST00000561242 CMTR1Q8N1G2 835 aaKnown RBP12.32□□□□□ -0.44
TPM1-229ENST00000561242 SRBD1Q8N5C6 995 aaKnown RBP12.32□□□□□ -0.44
TPM1-229ENST00000561242 NSUN6Q8TEA1 469 aaKnown RBP12.32□□□□□ -0.44
TPM1-229ENST00000561242 RNF26Q9BY78 433 aaPredicted RBP12.32□□□□□ -0.44
TPM1-229ENST00000561242 TCEAL9Q9UHQ7 104 aa12.32□□□□□ -0.44
TPM1-229ENST00000561242 HPS5Q9UPZ3 1129 aa12.32□□□□□ -0.44
TPM1-229ENST00000561242 LAMB1P07942 1786 aa12.31□□□□□ -0.44
TPM1-229ENST00000561242 SMCO2A6NFE2 343 aa12.31□□□□□ -0.44
TPM1-229ENST00000561242 SCG2P13521 617 aa12.31□□□□□ -0.44
TPM1-229ENST00000561242 IFNAR1P17181 557 aa12.31□□□□□ -0.44
TPM1-229ENST00000561242 ADCY7P51828 1080 aa12.31□□□□□ -0.44
TPM1-229ENST00000561242 HMGN5P82970 282 aaKnown RBP12.31□□□□□ -0.44
TPM1-229ENST00000561242 TOB2Q14106 344 aaPredicted RBP12.31□□□□□ -0.44
TPM1-229ENST00000561242 MORN1Q5T089 497 aa12.31□□□□□ -0.44
TPM1-229ENST00000561242 OLFML2BQ68BL8 750 aa12.31□□□□□ -0.44
TPM1-229ENST00000561242 PPP1R18Q6NYC8 613 aa12.31□□□□□ -0.44
TPM1-229ENST00000561242 TEX2Q8IWB9 1127 aa12.31□□□□□ -0.44
TPM1-229ENST00000561242 REPS2Q8NFH8 660 aa12.31□□□□□ -0.44
TPM1-229ENST00000561242 DNERQ8NFT8 737 aa12.31□□□□□ -0.44
TPM1-229ENST00000561242 SH3TC2Q8TF17 1288 aa12.31□□□□□ -0.44
TPM1-229ENST00000561242 TBC1D32Q96NH3 1257 aa12.31□□□□□ -0.44
TPM1-229ENST00000561242 ZHX1Q9UKY1 873 aaPredicted RBP12.31□□□□□ -0.44
TPM1-229ENST00000561242 FAM184BQ9ULE4 1060 aa12.31□□□□□ -0.44
TPM1-229ENST00000561242 RIPK3Q9Y572 518 aa12.31□□□□□ -0.44
TPM1-229ENST00000561242 LOC102724159A0A0B4J2E5 919 aa12.3□□□□□ -0.44
TPM1-229ENST00000561242 ZEB2O60315 1214 aa12.3□□□□□ -0.44
TPM1-229ENST00000561242 MARCH6O60337 910 aa12.3□□□□□ -0.44
TPM1-229ENST00000561242 PFKFB2O60825 505 aa12.3□□□□□ -0.44
TPM1-229ENST00000561242 FOSP01100 380 aaPredicted RBP12.3□□□□□ -0.44
TPM1-229ENST00000561242 INHAP05111 366 aa12.3□□□□□ -0.44
TPM1-229ENST00000561242 ELNP15502 786 aa12.3□□□□□ -0.44
TPM1-229ENST00000561242 PWP2Q15269 919 aaKnown RBP12.3□□□□□ -0.44
TPM1-229ENST00000561242 STXBP2Q15833 593 aa12.3□□□□□ -0.44
TPM1-229ENST00000561242 RASGRP2Q7LDG7 609 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms