RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 BARHL2Q9NY43 387 aa7.39□□□□□ -1.23
SPG11-221ENST00000560299 VPS54Q9P1Q0 977 aa7.39□□□□□ -1.23
SPG11-221ENST00000560299 hCG_1642624A0A1W2PR95 340 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 ESYT2A0FGR8 921 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 DTNBO60941 627 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 ZBED4O75132 1171 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 BAG4O95429 457 aaKnown RBP7.38□□□□□ -1.23
SPG11-221ENST00000560299 U2AF2P26368 475 aaKnown RBP eCLIP7.38□□□□□ -1.23
SPG11-221ENST00000560299 MRPL12P52815 198 aaKnown RBP7.38□□□□□ -1.23
SPG11-221ENST00000560299 HMGCS2P54868 508 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 PABPC4Q13310 644 aaKnown RBP eCLIP7.38□□□□□ -1.23
SPG11-221ENST00000560299 MOGSQ13724 837 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 ARHGEF6Q15052 776 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 PKN2Q16513 984 aaKnown RBP7.38□□□□□ -1.23
SPG11-221ENST00000560299 CDC37Q16543 378 aaPredicted RBP7.38□□□□□ -1.23
SPG11-221ENST00000560299 MCTP2Q6DN12 878 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 LBX2Q6XYB7 198 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 FBXO11Q86XK2 927 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 DIS3L2Q8IYB7 885 aaKnown RBP7.38□□□□□ -1.23
SPG11-221ENST00000560299 KIFC2Q96AC6 838 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 MTMR8Q96EF0 704 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 CLMNQ96JQ2 1002 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 AIFM3Q96NN9 605 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 NUP88Q99567 741 aaPredicted RBP7.38□□□□□ -1.23
SPG11-221ENST00000560299 SLF1Q9BQI6 1058 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 TMEM106CQ9BVX2 250 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 TANGO6Q9C0B7 1094 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 ELP3Q9H9T3 547 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 EMILIN3Q9NT22 766 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 RNF186Q9NXI6 227 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 HOXC10Q9NYD6 342 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.38□□□□□ -1.23
SPG11-221ENST00000560299 PRR12Q9ULL5 1215 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 NOL7Q9UMY1 257 aaKnown RBP7.38□□□□□ -1.23
SPG11-221ENST00000560299 FZD1Q9UP38 647 aa7.38□□□□□ -1.23
SPG11-221ENST00000560299 MYPNQ86TC9 1320 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 PHIPQ8WWQ0 1821 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 CCDC194A0A1B0GVG4 234 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 SMCO2A6NFE2 343 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 USP17L15C9J2P7 530 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 USP17L13C9JLJ4 530 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 USP17L11C9JVI0 530 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 USP17L18D6R9N7 530 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 USP17L22D6RA61 530 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 USP17L17D6RBQ6 530 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 USP17L19D6RCP7 530 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 USP17L20D6RJB6 530 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 STXBP3O00186 592 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 TLR2O60603 784 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 FLOT1O75955 427 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 HSPA1AP0DMV8 641 aaKnown RBP7.37□□□□□ -1.23
SPG11-221ENST00000560299 HSPA1BP0DMV9 641 aaKnown RBP7.37□□□□□ -1.23
SPG11-221ENST00000560299 CAPN2P17655 700 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 VCAM1P19320 739 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 MCM4P33991 863 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 GJA5P36382 358 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 ADCY7P51828 1080 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 USP17L24Q0WX57 530 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 RESTQ13127 1097 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 COG2Q14746 738 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 QRICH1Q2TAL8 776 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 RILPL1Q5EBL4 403 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 WWC2Q6AWC2 1192 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 RASGRP2Q7LDG7 609 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 CCDC84Q86UT8 332 aaPredicted RBP7.37□□□□□ -1.23
SPG11-221ENST00000560299 NOSTRINQ8IVI9 506 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 BLIDQ8IZY5 108 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 DAGLBQ8NCG7 672 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 BRI3BPQ8WY22 251 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 GPKOWQ92917 476 aaPredicted RBP eCLIP7.37□□□□□ -1.23
SPG11-221ENST00000560299 CUL5Q93034 780 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 PTPN18Q99952 460 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 ZMYND12Q9H0C1 365 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 CPVLQ9H3G5 476 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 RPAP3Q9H6T3 665 aaPredicted RBP7.37□□□□□ -1.23
SPG11-221ENST00000560299 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.37□□□□□ -1.23
SPG11-221ENST00000560299 PNMA3Q9UL41 463 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 PCDHA4Q9UN74 947 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 KCNJ14Q9UNX9 436 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 CEP131Q9UPN4 1083 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 AGTPBP1Q9UPW5 1226 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 PCDHA1Q9Y5I3 950 aa7.37□□□□□ -1.23
SPG11-221ENST00000560299 ADGRA2Q96PE1 1338 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 CCL15-CCL14A0A0B4J2E2 113 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 GOLGA6L4A6NEF3 574 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 BTBD18B2RXH4 712 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 AOC2O75106 756 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 BMP15O95972 392 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 HSPA8P11142 646 aaKnown RBP7.36□□□□□ -1.23
SPG11-221ENST00000560299 GCLCP48506 637 aaPredicted RBP7.36□□□□□ -1.23
SPG11-221ENST00000560299 PRMT2P55345 433 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 IRX3P78415 501 aaPredicted RBP7.36□□□□□ -1.23
SPG11-221ENST00000560299 DNM1Q05193 864 aaKnown RBP7.36□□□□□ -1.23
SPG11-221ENST00000560299 SF3A1Q15459 793 aaKnown RBP7.36□□□□□ -1.23
SPG11-221ENST00000560299 NFKBIBQ15653 356 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 CCL15Q16663 113 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 SKOR2Q2VWA4 1001 aaPredicted RBP7.36□□□□□ -1.23
SPG11-221ENST00000560299 FOXD4L6Q3SYB3 417 aaPredicted RBP7.36□□□□□ -1.23
SPG11-221ENST00000560299 KIAA1755Q5JYT7 1200 aa7.36□□□□□ -1.23
SPG11-221ENST00000560299 MYSM1Q5VVJ2 828 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms