RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 EGR3Q06889 387 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 FXNQ16595 210 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 C21orf62-AS1Q17RA5 79 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 TKFCQ3LXA3 575 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 MTERF2Q49AM1 385 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 TMEM201Q5SNT2 666 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 SCARA3Q6AZY7 606 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 VHLLQ6RSH7 139 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 CDC37L1Q7L3B6 337 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 NLRC3Q7RTR2 1065 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 IGDCC3Q8IVU1 814 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 TMEM192Q8IY95 271 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 C19orf47Q8N9M1 422 aaKnown RBP2.41□□□□□ -2.02
USP3-209ENST00000558925 FAM13CQ8NE31 585 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 XAGE3Q8WTP9 111 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 KLHL6Q8WZ60 621 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 TMEM87BQ96K49 555 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 ZNF512BQ96KM6 892 aaPredicted RBP2.41□□□□□ -2.02
USP3-209ENST00000558925 KIF2CQ99661 725 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 TM9SF2Q99805 663 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 WNT10AQ9GZT5 417 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 CCDC113Q9H0I3 377 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 WDR26Q9H7D7 661 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 CNNM2Q9H8M5 875 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 PICK1Q9NRD5 415 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 ZMYM5Q9UJ78 669 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 KDM2BQ8NHM5 1336 aa2.41□□□□□ -2.02
USP3-209ENST00000558925 C9IYK1 514 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 K7ESM1 405 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 TNFRSF10CO14798 259 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 FFAR3O14843 346 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 SUSD5O60279 629 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 CDC45O75419 566 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 TP53P04637 393 aaPredicted RBP2.4□□□□□ -2.03
USP3-209ENST00000558925 RAG1P15918 1043 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 HSD3B2P26439 372 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 CANXP27824 592 aaKnown RBP2.4□□□□□ -2.03
USP3-209ENST00000558925 VIPR1P32241 457 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 MAGEA10P43363 369 aaPredicted RBP2.4□□□□□ -2.03
USP3-209ENST00000558925 HMGA2P52926 109 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 CHMP4BP1P59074 171 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 PDE4BQ07343 736 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 SSRP1Q08945 709 aaKnown RBP2.4□□□□□ -2.03
USP3-209ENST00000558925 IFRD2Q12894 506 aaPredicted RBP2.4□□□□□ -2.03
USP3-209ENST00000558925 LRRFIP1Q32MZ4 808 aaKnown RBP2.4□□□□□ -2.03
USP3-209ENST00000558925 SLC10A6Q3KNW5 377 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 C2orf27AQ580R0 203 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 CRB2Q5IJ48 1285 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 ADGRF1Q5T601 910 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 PRAMEF13Q5VWM6 474 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 CDCP2Q5VXM1 449 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 FOXB2Q5VYV0 432 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 DIEXFQ68CQ4 756 aaKnown RBP2.4□□□□□ -2.03
USP3-209ENST00000558925 KIAA1211LQ6NV74 962 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 CNKSR3Q6P9H4 555 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 CDH24Q86UP0 819 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 NLRX1Q86UT6 975 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 FERMT3Q86UX7 667 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 PHACTR4Q8IZ21 702 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 TAB3Q8N5C8 712 aaPredicted RBP2.4□□□□□ -2.03
USP3-209ENST00000558925 LINC01356Q8N9X3 169 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 ZNF507Q8TCN5 953 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 SLC6A18Q96N87 628 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 G6PC3Q9BUM1 346 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 SUSD2Q9UGT4 822 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 SRRDQ9UH36 339 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 ADAM30Q9UKF2 790 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 PCDHA11Q9Y5I1 949 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 PTCH2Q9Y6C5 1203 aa2.4□□□□□ -2.03
USP3-209ENST00000558925 OR14I1A6ND48 311 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 TBX1O43435 398 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 ADCY3O60266 1144 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 FAM153BP0C7A2 387 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 CAP2P40123 477 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 KIR3DL1P43629 444 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 GNPTABQ3T906 1256 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 PLEKHG4Q58EX7 1191 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 AXDND1Q5T1B0 1012 aaPredicted RBP2.39□□□□□ -2.03
USP3-209ENST00000558925 ZFYVE27Q5T4F4 411 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 YOD1Q5VVQ6 348 aaPredicted RBP2.39□□□□□ -2.03
USP3-209ENST00000558925 DCAF15Q66K64 600 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 LRP10Q7Z4F1 713 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 HID1Q8IV36 788 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 MCATQ8IVS2 390 aaKnown RBP2.39□□□□□ -2.03
USP3-209ENST00000558925 ZFPM1Q8IX07 1006 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 MRPL41Q8IXM3 137 aaKnown RBP2.39□□□□□ -2.03
USP3-209ENST00000558925 ADGRG2Q8IZP9 1017 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 OXR1Q8N573 874 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 MFSD2AQ8NA29 543 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 KCT2Q8NC54 265 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 LINC01599Q8WXQ3 324 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 FGD4Q96M96 766 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 MRIQ9BWK5 157 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 TMEM260Q9NX78 707 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 APEX2Q9UBZ4 518 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 DUSP13Q9UII6 198 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 ZNF214Q9UL59 606 aaPredicted RBP2.39□□□□□ -2.03
USP3-209ENST00000558925 TACC3Q9Y6A5 838 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 DUSP10Q9Y6W6 482 aa2.39□□□□□ -2.03
USP3-209ENST00000558925 A0A1B0GTL3 188 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms