RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 TUBBP07437 444 aa12.6□□□□□ -0.39
LDLR-208ENST00000558518 RPSAP08865 295 aaKnown RBP12.6□□□□□ -0.39
LDLR-208ENST00000558518 EHHADHQ08426 723 aa12.6□□□□□ -0.39
LDLR-208ENST00000558518 DZIP3Q86Y13 1208 aaKnown RBP12.6□□□□□ -0.39
LDLR-208ENST00000558518 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.6□□□□□ -0.39
LDLR-208ENST00000558518 ZIM3Q96PE6 472 aa12.6□□□□□ -0.39
LDLR-208ENST00000558518 NCAPGQ9BPX3 1015 aa12.6□□□□□ -0.39
LDLR-208ENST00000558518 TECP42680 631 aa12.6□□□□□ -0.39
LDLR-208ENST00000558518 IRF2BP1Q8IU81 584 aa12.6□□□□□ -0.39
LDLR-208ENST00000558518 KSR1Q8IVT5 923 aa12.6□□□□□ -0.39
LDLR-208ENST00000558518 RNF26Q9BY78 433 aaPredicted RBP12.6□□□□□ -0.39
LDLR-208ENST00000558518 TMEM60Q9H2L4 133 aa12.6□□□□□ -0.39
LDLR-208ENST00000558518 ZBTB1Q9Y2K1 713 aa12.6□□□□□ -0.39
LDLR-208ENST00000558518 PSMD14O00487 310 aa12.6□□□□□ -0.39
LDLR-208ENST00000558518 ANKRD40Q6AI12 368 aa12.6□□□□□ -0.39
LDLR-208ENST00000558518 UHMK1Q8TAS1 419 aaKnown RBP12.6□□□□□ -0.39
LDLR-208ENST00000558518 RNPC3Q96LT9 517 aaKnown RBP12.6□□□□□ -0.39
LDLR-208ENST00000558518 ISCA1Q9BUE6 129 aa12.6□□□□□ -0.39
LDLR-208ENST00000558518 MYH15Q9Y2K3 1946 aa12.59□□□□□ -0.39
LDLR-208ENST00000558518 STK36Q9NRP7 1315 aa12.59□□□□□ -0.39
LDLR-208ENST00000558518 AFDNP55196 1824 aaKnown RBP12.59□□□□□ -0.39
LDLR-208ENST00000558518 EIF3HO15372 352 aaKnown RBP eCLIP12.59□□□□□ -0.39
LDLR-208ENST00000558518 TXKP42681 527 aa12.59□□□□□ -0.39
LDLR-208ENST00000558518 DNM2P50570 870 aa12.59□□□□□ -0.39
LDLR-208ENST00000558518 STK4Q13043 487 aa12.59□□□□□ -0.39
LDLR-208ENST00000558518 CDK5RAP3Q96JB5 506 aa12.59□□□□□ -0.39
LDLR-208ENST00000558518 OSBPL9Q96SU4 736 aa12.59□□□□□ -0.39
LDLR-208ENST00000558518 PHF20Q9BVI0 1012 aa12.59□□□□□ -0.39
LDLR-208ENST00000558518 CCDC113Q9H0I3 377 aa12.59□□□□□ -0.39
LDLR-208ENST00000558518 PCDHA13Q9Y5I0 950 aa12.59□□□□□ -0.39
LDLR-208ENST00000558518 KDM3BQ7LBC6 1761 aa12.59□□□□□ -0.39
LDLR-208ENST00000558518 TCRBV5S4A2TA0A5A2 114 aa12.59□□□□□ -0.39
LDLR-208ENST00000558518 EPHB6O15197 1021 aa12.59□□□□□ -0.39
LDLR-208ENST00000558518 IGHMBP2P38935 993 aaKnown RBP12.59□□□□□ -0.39
LDLR-208ENST00000558518 KIF11P52732 1056 aa12.59□□□□□ -0.39
LDLR-208ENST00000558518 TUBB4BP68371 445 aa12.59□□□□□ -0.39
LDLR-208ENST00000558518 TTMPQ5BVD1 217 aa12.59□□□□□ -0.39
LDLR-208ENST00000558518 DDX42Q86XP3 938 aaKnown RBP eCLIP12.59□□□□□ -0.391e-7■■■□□ 15
LDLR-208ENST00000558518 UBLCP1Q8WVY7 318 aaPredicted RBP12.59□□□□□ -0.39
LDLR-208ENST00000558518 GOPCQ9HD26 462 aa12.59□□□□□ -0.39
LDLR-208ENST00000558518 TLDC2A0PJX2 215 aa12.58□□□□□ -0.39
LDLR-208ENST00000558518 CCNT1O60563 726 aaKnown RBP12.58□□□□□ -0.39
LDLR-208ENST00000558518 SCG2P13521 617 aa12.58□□□□□ -0.39
LDLR-208ENST00000558518 USP8P40818 1118 aa12.58□□□□□ -0.39
LDLR-208ENST00000558518 CACNB1Q02641 598 aaPredicted RBP12.58□□□□□ -0.39
LDLR-208ENST00000558518 NAA35Q5VZE5 725 aa12.58□□□□□ -0.39
LDLR-208ENST00000558518 SPATA20Q8TB22 786 aa12.58□□□□□ -0.39
LDLR-208ENST00000558518 OVOS2A0A0G2JMS6 1433 aa12.58□□□□□ -0.4
LDLR-208ENST00000558518 EPS15P42566 896 aa12.58□□□□□ -0.4
LDLR-208ENST00000558518 SF3B2Q13435 895 aaKnown RBP12.58□□□□□ -0.4
LDLR-208ENST00000558518 PRPF4BQ13523 1007 aaKnown RBP12.58□□□□□ -0.4
LDLR-208ENST00000558518 TICAM2Q86XR7 235 aa12.58□□□□□ -0.4
LDLR-208ENST00000558518 NELFCDQ8IXH7 590 aa12.58□□□□□ -0.4
LDLR-208ENST00000558518 MARCH10Q8NA82 808 aaPredicted RBP12.58□□□□□ -0.4
LDLR-208ENST00000558518 TBC1D31Q96DN5 1066 aa12.58□□□□□ -0.4
LDLR-208ENST00000558518 TCP11L1Q9NUJ3 509 aa12.58□□□□□ -0.4
LDLR-208ENST00000558518 TFCP2L1Q9NZI6 479 aa12.58□□□□□ -0.4
LDLR-208ENST00000558518 STIM2Q9P246 746 aa12.58□□□□□ -0.4
LDLR-208ENST00000558518 WDR19Q8NEZ3 1342 aa12.58□□□□□ -0.4
LDLR-208ENST00000558518 TOPAZ1Q8N9V7 1692 aa12.58□□□□□ -0.4
LDLR-208ENST00000558518 EIF4E1BA6NMX2 242 aaKnown RBP12.58□□□□□ -0.4
LDLR-208ENST00000558518 PLCG1P19174 1290 aa12.58□□□□□ -0.4
LDLR-208ENST00000558518 HDLBPQ00341 1268 aaKnown RBP12.58□□□□□ -0.4
LDLR-208ENST00000558518 STAG2Q8N3U4 1231 aa12.58□□□□□ -0.4
LDLR-208ENST00000558518 STAG1Q8WVM7 1258 aa12.58□□□□□ -0.4
LDLR-208ENST00000558518 AP1M1Q9BXS5 423 aa12.58□□□□□ -0.4
LDLR-208ENST00000558518 CAPN11Q9UMQ6 739 aa12.58□□□□□ -0.4
LDLR-208ENST00000558518 LRRC53A6NM62 1247 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 TMOD1P28289 359 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 SLC1A4P43007 532 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 ATP2C1P98194 919 aaPredicted RBP12.57□□□□□ -0.4
LDLR-208ENST00000558518 RAPGEF1Q13905 1077 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 PDXDC2PQ6P474 469 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 SMIM5Q71RC9 77 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 TRIM58Q8NG06 486 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 CXorf56Q9H5V9 222 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 DISC1Q9NRI5 854 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 SNX12Q9UMY4 172 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 RTL9Q8NET4 1388 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 MYH13Q9UKX3 1938 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 ZNF263O14978 683 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 GLI1P08151 1106 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 CCDC40Q4G0X9 1142 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 SPTY2D1Q68D10 685 aaPredicted RBP12.57□□□□□ -0.4
LDLR-208ENST00000558518 SH3RF1Q7Z6J0 888 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 ADSSL1Q8N142 457 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 MCM9Q9NXL9 1143 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 FAM205AQ6ZU69 1335 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 TAX1BP1Q86VP1 789 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 GJA10Q969M2 543 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 ITIH6Q6UXX5 1313 aa12.57□□□□□ -0.4
LDLR-208ENST00000558518 PDE8AO60658 829 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 BMP15O95972 392 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 GIGYF2Q6Y7W6 1299 aaKnown RBP12.56□□□□□ -0.4
LDLR-208ENST00000558518 CABP7Q86V35 215 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 AMOTL1Q8IY63 956 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 BLIDQ8IZY5 108 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 VIPAS39Q9H9C1 493 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 MKNK2Q9HBH9 465 aa12.56□□□□□ -0.4
LDLR-208ENST00000558518 HYOU1Q9Y4L1 999 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms