RNA–Protein interactions for RNA: ENST00000558080.1

SPG11-205, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 1 (best)

Gene SPG11, Length 759 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-205ENST00000558080 WDR78Q5VTH9 848 aa9.03□□□□□ -0.96
SPG11-205ENST00000558080 C16orf86Q6ZW13 317 aa9.03□□□□□ -0.96
SPG11-205ENST00000558080 GPR142Q7Z601 462 aa9.03□□□□□ -0.96
SPG11-205ENST00000558080 PLEKHH3Q7Z736 793 aa9.03□□□□□ -0.96
SPG11-205ENST00000558080 SIAH1Q8IUQ4 282 aa9.03□□□□□ -0.96
SPG11-205ENST00000558080 GTF3C2Q8WUA4 911 aaPredicted RBP9.03□□□□□ -0.96
SPG11-205ENST00000558080 APPBP2Q92624 585 aa9.03□□□□□ -0.96
SPG11-205ENST00000558080 DEFB118Q96PH6 123 aa9.03□□□□□ -0.96
SPG11-205ENST00000558080 TANGO6Q9C0B7 1094 aa9.03□□□□□ -0.96
SPG11-205ENST00000558080 ARHGEF10LQ9HCE6 1279 aa9.03□□□□□ -0.96
SPG11-205ENST00000558080 BTBD7Q9P203 1132 aa9.03□□□□□ -0.96
SPG11-205ENST00000558080 RABGAP1Q9Y3P9 1069 aa9.03□□□□□ -0.96
SPG11-205ENST00000558080 TTC41PQ6P2S7 1318 aa9.03□□□□□ -0.96
SPG11-205ENST00000558080 CFAP99D6REC4 459 aa9.02□□□□□ -0.97
SPG11-205ENST00000558080 M0R2C6 588 aa9.02□□□□□ -0.97
SPG11-205ENST00000558080 GPAA1O43292 621 aa9.02□□□□□ -0.97
SPG11-205ENST00000558080 FARP2O94887 1054 aaPredicted RBP9.02□□□□□ -0.97
SPG11-205ENST00000558080 F12P00748 615 aaPredicted RBP9.02□□□□□ -0.97
SPG11-205ENST00000558080 APPP05067 770 aa9.02□□□□□ -0.97
SPG11-205ENST00000558080 ZFYP08048 801 aaPredicted RBP9.02□□□□□ -0.97
SPG11-205ENST00000558080 MX1P20591 662 aa9.02□□□□□ -0.97
SPG11-205ENST00000558080 CTHP32929 405 aa9.02□□□□□ -0.97
SPG11-205ENST00000558080 ICA1Q05084 483 aa9.02□□□□□ -0.97
SPG11-205ENST00000558080 SPICE1Q8N0Z3 855 aa9.02□□□□□ -0.97
SPG11-205ENST00000558080 PI4K2BQ8TCG2 481 aa9.02□□□□□ -0.97
SPG11-205ENST00000558080 TRIB2Q92519 343 aa9.02□□□□□ -0.97
SPG11-205ENST00000558080 DPF3Q92784 378 aa9.02□□□□□ -0.97
SPG11-205ENST00000558080 CCDC17Q96LX7 622 aa9.02□□□□□ -0.97
SPG11-205ENST00000558080 PURBQ96QR8 312 aaKnown RBP9.02□□□□□ -0.97
SPG11-205ENST00000558080 FSD1Q9BTV5 496 aa9.02□□□□□ -0.97
SPG11-205ENST00000558080 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.02□□□□□ -0.97
SPG11-205ENST00000558080 TMX2Q9Y320 296 aa9.02□□□□□ -0.97
SPG11-205ENST00000558080 SPTLC1O15269 473 aa9.01□□□□□ -0.97
SPG11-205ENST00000558080 RAD21O60216 631 aa9.01□□□□□ -0.97
SPG11-205ENST00000558080 GLRX3O76003 335 aaKnown RBP9.01□□□□□ -0.97
SPG11-205ENST00000558080 VSIG8P0DPA2 414 aa9.01□□□□□ -0.97
SPG11-205ENST00000558080 EEF2P13639 858 aaKnown RBP9.01□□□□□ -0.97
SPG11-205ENST00000558080 TDO2P48775 406 aa9.01□□□□□ -0.97
SPG11-205ENST00000558080 CCNA1P78396 465 aa9.01□□□□□ -0.97
SPG11-205ENST00000558080 COG2Q14746 738 aa9.01□□□□□ -0.97
SPG11-205ENST00000558080 CCL14Q16627 93 aa9.01□□□□□ -0.97
SPG11-205ENST00000558080 SBK1Q52WX2 424 aa9.01□□□□□ -0.97
SPG11-205ENST00000558080 USP6NLQ92738 828 aa9.01□□□□□ -0.97
SPG11-205ENST00000558080 SEC62Q99442 399 aaKnown RBP9.01□□□□□ -0.97
SPG11-205ENST00000558080 SH2D4AQ9H788 454 aa9.01□□□□□ -0.97
SPG11-205ENST00000558080 MKNK2Q9HBH9 465 aa9.01□□□□□ -0.97
SPG11-205ENST00000558080 EPB41L4AQ9HCS5 686 aaPredicted RBP9.01□□□□□ -0.97
SPG11-205ENST00000558080 HMX1Q9NP08 348 aaPredicted RBP9.01□□□□□ -0.97
SPG11-205ENST00000558080 PAK6Q9NQU5 681 aaPredicted RBP9.01□□□□□ -0.97
SPG11-205ENST00000558080 HOXC10Q9NYD6 342 aa9.01□□□□□ -0.97
SPG11-205ENST00000558080 ARPP21Q9UBL0 812 aaPredicted RBP9.01□□□□□ -0.97
SPG11-205ENST00000558080 MYH6P13533 1939 aa9.01□□□□□ -0.97
SPG11-205ENST00000558080 RPTORQ8N122 1335 aa9.01□□□□□ -0.97
SPG11-205ENST00000558080 SLC15A5A6NIM6 579 aa9□□□□□ -0.97
SPG11-205ENST00000558080 PATL2C9JE40 543 aaKnown RBP9□□□□□ -0.97
SPG11-205ENST00000558080 H0YGN5 161 aa9□□□□□ -0.97
SPG11-205ENST00000558080 FLOT1O75955 427 aa9□□□□□ -0.97
SPG11-205ENST00000558080 XRCC5P13010 732 aaKnown RBP9□□□□□ -0.97
SPG11-205ENST00000558080 ZKSCAN1P17029 563 aaPredicted RBP9□□□□□ -0.97
SPG11-205ENST00000558080 GNAT2P19087 354 aa9□□□□□ -0.97
SPG11-205ENST00000558080 RASA1P20936 1047 aa9□□□□□ -0.97
SPG11-205ENST00000558080 RGS2P41220 211 aa9□□□□□ -0.97
SPG11-205ENST00000558080 PLS1Q14651 629 aa9□□□□□ -0.97
SPG11-205ENST00000558080 LRRFIP1Q32MZ4 808 aaKnown RBP9□□□□□ -0.97
SPG11-205ENST00000558080 B4GALNT3Q6L9W6 998 aa9□□□□□ -0.97
SPG11-205ENST00000558080 GIMAP6Q6P9H5 292 aa9□□□□□ -0.97
SPG11-205ENST00000558080 LBX2Q6XYB7 198 aa9□□□□□ -0.97
SPG11-205ENST00000558080 UBE2Q1Q7Z7E8 422 aa9□□□□□ -0.97
SPG11-205ENST00000558080 EXOC6Q8TAG9 804 aa9□□□□□ -0.97
SPG11-205ENST00000558080 SOCS4Q8WXH5 440 aa9□□□□□ -0.97
SPG11-205ENST00000558080 FOXJ1Q92949 421 aa9□□□□□ -0.97
SPG11-205ENST00000558080 ATG4CQ96DT6 458 aa9□□□□□ -0.97
SPG11-205ENST00000558080 CCDC136Q96JN2 1154 aa9□□□□□ -0.97
SPG11-205ENST00000558080 HTATIP2Q9BUP3 242 aa9□□□□□ -0.97
SPG11-205ENST00000558080 VCPKMTQ9H867 229 aa9□□□□□ -0.97
SPG11-205ENST00000558080 KANSL2Q9H9L4 492 aa9□□□□□ -0.97
SPG11-205ENST00000558080 ZNF236Q9UL36 1845 aa9□□□□□ -0.97
SPG11-205ENST00000558080 PRDM1O75626 825 aa8.99□□□□□ -0.97
SPG11-205ENST00000558080 CACNB2Q08289 660 aaPredicted RBP8.99□□□□□ -0.97
SPG11-205ENST00000558080 HDAC1Q13547 482 aaPredicted RBP8.99□□□□□ -0.97
SPG11-205ENST00000558080 ZMYM1Q5SVZ6 1142 aa8.99□□□□□ -0.97
SPG11-205ENST00000558080 CCDC129Q6ZRS4 1044 aa8.99□□□□□ -0.97
SPG11-205ENST00000558080 PARP9Q8IXQ6 854 aa8.99□□□□□ -0.97
SPG11-205ENST00000558080 TRMT44Q8IYL2 757 aaKnown RBP8.99□□□□□ -0.97
SPG11-205ENST00000558080 IFNL3Q8IZI9 196 aa8.99□□□□□ -0.97
SPG11-205ENST00000558080 DIS3LQ8TF46 1054 aaKnown RBP8.99□□□□□ -0.97
SPG11-205ENST00000558080 LPAR1Q92633 364 aa8.99□□□□□ -0.97
SPG11-205ENST00000558080 GCC1Q96CN9 775 aa8.99□□□□□ -0.97
SPG11-205ENST00000558080 PAWRQ96IZ0 340 aaKnown RBP8.99□□□□□ -0.97
SPG11-205ENST00000558080 APBA2Q99767 749 aa8.99□□□□□ -0.97
SPG11-205ENST00000558080 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.99□□□□□ -0.97
SPG11-205ENST00000558080 MOV10L1Q9BXT6 1211 aaKnown RBP8.99□□□□□ -0.97
SPG11-205ENST00000558080 SPATC1LQ9H0A9 340 aa8.99□□□□□ -0.97
SPG11-205ENST00000558080 FLRT1Q9NZU1 646 aa8.99□□□□□ -0.97
SPG11-205ENST00000558080 MAP10Q9P2G4 905 aa8.99□□□□□ -0.97
SPG11-205ENST00000558080 IVNS1ABPQ9Y6Y0 642 aa8.99□□□□□ -0.97
SPG11-205ENST00000558080 SALL3Q9BXA9 1300 aa8.99□□□□□ -0.97
SPG11-205ENST00000558080 WDR46O15213 610 aaKnown RBP8.98□□□□□ -0.97
SPG11-205ENST00000558080 ERCC3P19447 782 aa8.98□□□□□ -0.97
SPG11-205ENST00000558080 CCND3P30281 292 aaPredicted RBP8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms