RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 LRRC31Q6UY01 552 aa18.21■□□□□ 0.51
SHMT2-232ENST00000557487 AMOTL1Q8IY63 956 aa18.21■□□□□ 0.51
SHMT2-232ENST00000557487 C10orf67Q8IYJ2 551 aa18.21■□□□□ 0.51
SHMT2-232ENST00000557487 AK8Q96MA6 479 aa18.21■□□□□ 0.51
SHMT2-232ENST00000557487 MMS19Q96T76 1030 aa18.21■□□□□ 0.51
SHMT2-232ENST00000557487 CAVIN4Q5BKX8 364 aa18.21■□□□□ 0.51
SHMT2-232ENST00000557487 CCNI2Q6ZMN8 369 aaPredicted RBP18.21■□□□□ 0.51
SHMT2-232ENST00000557487 SMARCC1Q92922 1105 aaPredicted RBP18.21■□□□□ 0.51
SHMT2-232ENST00000557487 ATP8A2Q9NTI2 1148 aa18.21■□□□□ 0.51
SHMT2-232ENST00000557487 ARPP21Q9UBL0 812 aaPredicted RBP18.21■□□□□ 0.51
SHMT2-232ENST00000557487 LCMT1Q9UIC8 334 aa18.21■□□□□ 0.51
SHMT2-232ENST00000557487 A6NNZ2 444 aa18.2■□□□□ 0.5
SHMT2-232ENST00000557487 KLRC4O43908 158 aa18.2■□□□□ 0.5
SHMT2-232ENST00000557487 TFRCP02786 760 aaKnown RBP18.2■□□□□ 0.5
SHMT2-232ENST00000557487 KIF5AQ12840 1032 aa18.2■□□□□ 0.5
SHMT2-232ENST00000557487 TUBB8Q3ZCM7 444 aa18.2■□□□□ 0.5
SHMT2-232ENST00000557487 MMGT1Q8N4V1 131 aa18.2■□□□□ 0.5
SHMT2-232ENST00000557487 TRIM58Q8NG06 486 aa18.2■□□□□ 0.5
SHMT2-232ENST00000557487 CAGE1Q8TC20 777 aa18.2■□□□□ 0.5
SHMT2-232ENST00000557487 TUBGCP2Q9BSJ2 902 aa18.2■□□□□ 0.5
SHMT2-232ENST00000557487 CRNKL1Q9BZJ0 848 aaKnown RBP18.2■□□□□ 0.5
SHMT2-232ENST00000557487 USO1O60763 962 aaKnown RBP18.19■□□□□ 0.5
SHMT2-232ENST00000557487 SHOX2O60902 331 aaPredicted RBP18.19■□□□□ 0.5
SHMT2-232ENST00000557487 TRIM21P19474 475 aaKnown RBP18.19■□□□□ 0.5
SHMT2-232ENST00000557487 CCNE1P24864 410 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 UBA7P41226 1012 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 VAV2P52735 878 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 ERGIC2Q96RQ1 377 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 NHEJ1Q9H9Q4 299 aaPredicted RBP18.19■□□□□ 0.5
SHMT2-232ENST00000557487 TRIM10Q9UDY6 481 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 JRKLQ9Y4A0 524 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 ZC3H4Q9UPT8 1303 aaKnown RBP18.19■□□□□ 0.5
SHMT2-232ENST00000557487 KAT6BQ8WYB5 2073 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 CCDC194A0A1B0GVG4 234 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 USP17L12C9JPN9 530 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 USP17L21D6R901 530 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 COBLO75128 1261 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 NTSR2O95665 410 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 HNRNPH3P31942 346 aaKnown RBP18.19■□□□□ 0.5
SHMT2-232ENST00000557487 CORO7P57737 925 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 NAALADL2Q58DX5 795 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 GBP6Q6ZN66 633 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 ZSCAN29Q8IWY8 852 aaPredicted RBP18.19■□□□□ 0.5
SHMT2-232ENST00000557487 CSGALNACT2Q8N6G5 542 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 PPM1EQ8WY54 764 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 ANKS1AQ92625 1134 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 P2RX5Q93086 422 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 RSPH14Q9UHP6 348 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 FAM184BQ9ULE4 1060 aa18.19■□□□□ 0.5
SHMT2-232ENST00000557487 LAMB1P07942 1786 aa18.18■□□□□ 0.5
SHMT2-232ENST00000557487 LY75O60449 1722 aa18.18■□□□□ 0.5
SHMT2-232ENST00000557487 ENC1O14682 589 aa18.18■□□□□ 0.5
SHMT2-232ENST00000557487 CLSTN1O94985 981 aa18.18■□□□□ 0.5
SHMT2-232ENST00000557487 TBC1D8BQ0IIM8 1120 aa18.18■□□□□ 0.5
SHMT2-232ENST00000557487 SPA17Q15506 151 aa18.18■□□□□ 0.5
SHMT2-232ENST00000557487 FKBP15Q5T1M5 1219 aa18.18■□□□□ 0.5
SHMT2-232ENST00000557487 DGKHQ86XP1 1220 aa18.18■□□□□ 0.5
SHMT2-232ENST00000557487 RASSF8Q8NHQ8 419 aa18.18■□□□□ 0.5
SHMT2-232ENST00000557487 SECISBP2LQ93073 1101 aaKnown RBP18.18■□□□□ 0.5
SHMT2-232ENST00000557487 CCDC87Q9NVE4 849 aa18.18■□□□□ 0.5
SHMT2-232ENST00000557487 HDAC6Q9UBN7 1215 aa18.18■□□□□ 0.5
SHMT2-232ENST00000557487 TRIM49BA6NDI0 452 aa18.17■□□□□ 0.5
SHMT2-232ENST00000557487 M0R2N6 131 aa18.17■□□□□ 0.5
SHMT2-232ENST00000557487 PES1O00541 588 aaKnown RBP18.17■□□□□ 0.5
SHMT2-232ENST00000557487 TRIM66O15016 1216 aa18.17■□□□□ 0.5
SHMT2-232ENST00000557487 PHACTR2O75167 634 aa18.17■□□□□ 0.5
SHMT2-232ENST00000557487 TACC1O75410 805 aa18.17■□□□□ 0.5
SHMT2-232ENST00000557487 DNAJC21Q5F1R6 531 aaKnown RBP18.17■□□□□ 0.5
SHMT2-232ENST00000557487 CCDC155Q8N6L0 562 aa18.17■□□□□ 0.5
SHMT2-232ENST00000557487 FAM76AQ8TAV0 307 aa18.17■□□□□ 0.5
SHMT2-232ENST00000557487 LRRC4BQ9NT99 713 aa18.17■□□□□ 0.5
SHMT2-232ENST00000557487 MAPK8IP1Q9UQF2 711 aa18.17■□□□□ 0.5
SHMT2-232ENST00000557487 ABCB11O95342 1321 aa18.17■□□□□ 0.5
SHMT2-232ENST00000557487 A0A1B0GUL6 1792 aa18.17■□□□□ 0.5
SHMT2-232ENST00000557487 B4DLN1 442 aa18.17■□□□□ 0.5
SHMT2-232ENST00000557487 IDEP14735 1019 aa18.17■□□□□ 0.5
SHMT2-232ENST00000557487 HMGB2P26583 209 aaKnown RBP18.17■□□□□ 0.5
SHMT2-232ENST00000557487 PMS1P54277 932 aaKnown RBP18.17■□□□□ 0.5
SHMT2-232ENST00000557487 DYNLL1P63167 89 aaKnown RBP18.17■□□□□ 0.5
SHMT2-232ENST00000557487 AMPD3Q01432 767 aa18.17■□□□□ 0.5
SHMT2-232ENST00000557487 ORC2Q13416 577 aaPredicted RBP18.17■□□□□ 0.5
SHMT2-232ENST00000557487 EFCAB13Q8IY85 973 aa18.17■□□□□ 0.5
SHMT2-232ENST00000557487 SELENOOQ9BVL4 669 aa18.17■□□□□ 0.5
SHMT2-232ENST00000557487 CAMTA2O94983 1202 aa18.16■□□□□ 0.5
SHMT2-232ENST00000557487 ANKRD18AQ8IVF6 992 aa18.16■□□□□ 0.5
SHMT2-232ENST00000557487 AENQ8WTP8 325 aaKnown RBP18.16■□□□□ 0.5
SHMT2-232ENST00000557487 DUSP9Q99956 384 aaKnown RBP18.16■□□□□ 0.5
SHMT2-232ENST00000557487 C7orf25Q9BPX7 421 aa18.16■□□□□ 0.5
SHMT2-232ENST00000557487 KAT14Q9H8E8 782 aa18.16■□□□□ 0.5
SHMT2-232ENST00000557487 BSDC1Q9NW68 430 aaPredicted RBP18.16■□□□□ 0.5
SHMT2-232ENST00000557487 SNX12Q9UMY4 172 aa18.16■□□□□ 0.5
SHMT2-232ENST00000557487 COL1A1P02452 1464 aaPredicted RBP18.16■□□□□ 0.5
SHMT2-232ENST00000557487 SCN7AQ01118 1682 aa18.16■□□□□ 0.5
SHMT2-232ENST00000557487 CYP2D7A0A087X1C5 515 aa18.15■□□□□ 0.5
SHMT2-232ENST00000557487 GOLGA6BA6NDN3 693 aa18.15■□□□□ 0.5
SHMT2-232ENST00000557487 GOLGA8KD6RF30 607 aa18.15■□□□□ 0.5
SHMT2-232ENST00000557487 TCP1P17987 556 aaKnown RBP18.15■□□□□ 0.5
SHMT2-232ENST00000557487 ARHGAP27Q6ZUM4 889 aa18.15■□□□□ 0.5
SHMT2-232ENST00000557487 CCDC42Q96M95 316 aa18.15■□□□□ 0.5
SHMT2-232ENST00000557487 LZTS2Q9BRK4 669 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms