RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 EFCAB13Q8IY85 973 aa18.17■□□□□ 0.5
SHMT2-231ENST00000557433 SELENOOQ9BVL4 669 aa18.17■□□□□ 0.5
SHMT2-231ENST00000557433 CAMTA2O94983 1202 aa18.16■□□□□ 0.5
SHMT2-231ENST00000557433 ANKRD18AQ8IVF6 992 aa18.16■□□□□ 0.5
SHMT2-231ENST00000557433 AENQ8WTP8 325 aaKnown RBP18.16■□□□□ 0.5
SHMT2-231ENST00000557433 DUSP9Q99956 384 aaKnown RBP18.16■□□□□ 0.5
SHMT2-231ENST00000557433 C7orf25Q9BPX7 421 aa18.16■□□□□ 0.5
SHMT2-231ENST00000557433 KAT14Q9H8E8 782 aa18.16■□□□□ 0.5
SHMT2-231ENST00000557433 BSDC1Q9NW68 430 aaPredicted RBP18.16■□□□□ 0.5
SHMT2-231ENST00000557433 SNX12Q9UMY4 172 aa18.16■□□□□ 0.5
SHMT2-231ENST00000557433 COL1A1P02452 1464 aaPredicted RBP18.16■□□□□ 0.5
SHMT2-231ENST00000557433 SCN7AQ01118 1682 aa18.16■□□□□ 0.5
SHMT2-231ENST00000557433 CYP2D7A0A087X1C5 515 aa18.15■□□□□ 0.5
SHMT2-231ENST00000557433 GOLGA6BA6NDN3 693 aa18.15■□□□□ 0.5
SHMT2-231ENST00000557433 GOLGA8KD6RF30 607 aa18.15■□□□□ 0.5
SHMT2-231ENST00000557433 TCP1P17987 556 aaKnown RBP18.15■□□□□ 0.5
SHMT2-231ENST00000557433 ARHGAP27Q6ZUM4 889 aa18.15■□□□□ 0.5
SHMT2-231ENST00000557433 CCDC42Q96M95 316 aa18.15■□□□□ 0.5
SHMT2-231ENST00000557433 LZTS2Q9BRK4 669 aa18.15■□□□□ 0.5
SHMT2-231ENST00000557433 DCP1AQ9NPI6 582 aaPredicted RBP18.15■□□□□ 0.5
SHMT2-231ENST00000557433 TCP11L1Q9NUJ3 509 aa18.15■□□□□ 0.5
SHMT2-231ENST00000557433 BAZ2AQ9UIF9 1905 aaKnown RBP18.15■□□□□ 0.5
SHMT2-231ENST00000557433 XIRP1Q702N8 1843 aaKnown RBP18.15■□□□□ 0.5
SHMT2-231ENST00000557433 TSPY2A6NKD2 308 aa18.15■□□□□ 0.5
SHMT2-231ENST00000557433 OPA1O60313 960 aa18.15■□□□□ 0.5
SHMT2-231ENST00000557433 LCA5LO95447 670 aa18.15■□□□□ 0.5
SHMT2-231ENST00000557433 FGFR1OPO95684 399 aaKnown RBP18.15■□□□□ 0.5
SHMT2-231ENST00000557433 CPP00450 1065 aa18.15■□□□□ 0.5
SHMT2-231ENST00000557433 TNFRSF8P28908 595 aa18.15■□□□□ 0.5
SHMT2-231ENST00000557433 GYG1P46976 350 aa18.15■□□□□ 0.5
SHMT2-231ENST00000557433 GRM4Q14833 912 aa18.15■□□□□ 0.5
SHMT2-231ENST00000557433 INTS5Q6P9B9 1019 aaKnown RBP18.15■□□□□ 0.5
SHMT2-231ENST00000557433 CNOT6LQ96LI5 555 aaKnown RBP18.15■□□□□ 0.5
SHMT2-231ENST00000557433 LACRTQ9GZZ8 138 aa18.15■□□□□ 0.5
SHMT2-231ENST00000557433 JADE2Q9NQC1 790 aa18.15■□□□□ 0.5
SHMT2-231ENST00000557433 ZNF652Q9Y2D9 606 aa18.15■□□□□ 0.5
SHMT2-231ENST00000557433 SRGAP2O75044 1071 aa18.14■□□□□ 0.49
SHMT2-231ENST00000557433 ADAMTS2O95450 1211 aa18.14■□□□□ 0.49
SHMT2-231ENST00000557433 GGCXP38435 758 aa18.14■□□□□ 0.49
SHMT2-231ENST00000557433 MTIF2P46199 727 aaKnown RBP18.14■□□□□ 0.49
SHMT2-231ENST00000557433 PPFIA1Q13136 1202 aa18.14■□□□□ 0.49
SHMT2-231ENST00000557433 SF3B3Q15393 1217 aaKnown RBP18.14■□□□□ 0.49
SHMT2-231ENST00000557433 TTC31Q49AM3 519 aaPredicted RBP18.14■□□□□ 0.49
SHMT2-231ENST00000557433 CNNM4Q6P4Q7 775 aa18.14■□□□□ 0.49
SHMT2-231ENST00000557433 NSUN4Q96CB9 384 aaKnown RBP18.14■□□□□ 0.49
SHMT2-231ENST00000557433 CAPZA3Q96KX2 299 aa18.14■□□□□ 0.49
SHMT2-231ENST00000557433 ALS2CR12Q96Q35 445 aa18.14■□□□□ 0.49
SHMT2-231ENST00000557433 NOC4LQ9BVI4 516 aaKnown RBP18.14■□□□□ 0.49
SHMT2-231ENST00000557433 AGPAT5Q9NUQ2 364 aa18.14■□□□□ 0.49
SHMT2-231ENST00000557433 PLAGL2Q9UPG8 496 aa18.14■□□□□ 0.49
SHMT2-231ENST00000557433 FAM205AQ6ZU69 1335 aa18.14■□□□□ 0.49
SHMT2-231ENST00000557433 GOLGA6CA6NDK9 693 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 RASSF10A6NK89 507 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 SMIM22K7EJ46 135 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 GOLGA6DP0CG33 693 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 EPB41P11171 864 aaKnown RBP18.13■□□□□ 0.49
SHMT2-231ENST00000557433 GLE1Q53GS7 698 aaKnown RBP18.13■□□□□ 0.49
SHMT2-231ENST00000557433 ALS2CLQ60I27 953 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 RCSD1Q6JBY9 416 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 EMBQ6PCB8 327 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 FOXR2Q6PJQ5 311 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 EDEM3Q9BZQ6 932 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 GOLGA6AQ9NYA3 693 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 SLAIN2Q9P270 581 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 RNF14Q9UBS8 474 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 PCDHA6Q9UN73 950 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 NIP7Q9Y221 180 aaKnown RBP eCLIP18.13■□□□□ 0.49
SHMT2-231ENST00000557433 PCDHA8Q9Y5H6 950 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 EXOC5O00471 708 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 NOP2P46087 812 aaKnown RBP18.13■□□□□ 0.49
SHMT2-231ENST00000557433 NNTQ13423 1086 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 FBXO33Q7Z6M2 555 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 CCDC84Q86UT8 332 aaPredicted RBP18.13■□□□□ 0.49
SHMT2-231ENST00000557433 PCMTD1Q96MG8 357 aaPredicted RBP18.13■□□□□ 0.49
SHMT2-231ENST00000557433 TRIM9Q9C026 710 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 SH2D4AQ9H788 454 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 TSKSQ9UJT2 592 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 HYOU1Q9Y4L1 999 aa18.13■□□□□ 0.49
SHMT2-231ENST00000557433 MAST2Q6P0Q8 1798 aa18.12■□□□□ 0.49
SHMT2-231ENST00000557433 A0A087WUV0 522 aaPredicted RBP18.12■□□□□ 0.49
SHMT2-231ENST00000557433 AGPSO00116 658 aa18.12■□□□□ 0.49
SHMT2-231ENST00000557433 EPHB4P54760 987 aa18.12■□□□□ 0.49
SHMT2-231ENST00000557433 PDE4DQ08499 809 aa18.12■□□□□ 0.49
SHMT2-231ENST00000557433 MIIPQ5JXC2 388 aa18.12■□□□□ 0.49
SHMT2-231ENST00000557433 FOXR1Q6PIV2 292 aa18.12■□□□□ 0.49
SHMT2-231ENST00000557433 KRT25Q7Z3Z0 450 aa18.12■□□□□ 0.49
SHMT2-231ENST00000557433 CABP7Q86V35 215 aa18.12■□□□□ 0.49
SHMT2-231ENST00000557433 CREG2Q8IUH2 290 aa18.12■□□□□ 0.49
SHMT2-231ENST00000557433 FAM84BQ96KN1 310 aaPredicted RBP18.12■□□□□ 0.49
SHMT2-231ENST00000557433 SH3GL2Q99962 352 aa18.12■□□□□ 0.49
SHMT2-231ENST00000557433 BARHL2Q9NY43 387 aa18.12■□□□□ 0.49
SHMT2-231ENST00000557433 RCCD1A6NED2 376 aa18.11■□□□□ 0.49
SHMT2-231ENST00000557433 PDE2AO00408 941 aaPredicted RBP18.11■□□□□ 0.49
SHMT2-231ENST00000557433 FAM47AQ5JRC9 791 aa18.11■□□□□ 0.49
SHMT2-231ENST00000557433 ZNF384Q8TF68 577 aa18.11■□□□□ 0.49
SHMT2-231ENST00000557433 IFIH1Q9BYX4 1025 aaKnown RBP18.11■□□□□ 0.49
SHMT2-231ENST00000557433 KIAA1551Q9HCM1 1747 aa18.11■□□□□ 0.49
SHMT2-231ENST00000557433 FLT1P17948 1338 aa18.11■□□□□ 0.49
SHMT2-231ENST00000557433 RGL2O15211 777 aa18.11■□□□□ 0.49
SHMT2-231ENST00000557433 PJA2O43164 708 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms