RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 ZXDCQ2QGD7 858 aaPredicted RBP6.71□□□□□ -1.34
PRPF39-210ENST00000556718 KRTAP5-3Q6L8H2 238 aa6.71□□□□□ -1.34
PRPF39-210ENST00000556718 EAF1Q96JC9 268 aaPredicted RBP6.71□□□□□ -1.34
PRPF39-210ENST00000556718 SPATA25Q9BR10 227 aa6.71□□□□□ -1.34
PRPF39-210ENST00000556718 METTL5Q9NRN9 209 aaKnown RBP6.71□□□□□ -1.34
PRPF39-210ENST00000556718 DBHP09172 617 aa6.7□□□□□ -1.34
PRPF39-210ENST00000556718 INSRRP14616 1297 aa6.7□□□□□ -1.34
PRPF39-210ENST00000556718 PFKLP17858 780 aa6.7□□□□□ -1.34
PRPF39-210ENST00000556718 MCM4P33991 863 aa6.7□□□□□ -1.34
PRPF39-210ENST00000556718 CAP1Q01518 475 aa6.7□□□□□ -1.34
PRPF39-210ENST00000556718 NR1I3Q14994 352 aa6.7□□□□□ -1.34
PRPF39-210ENST00000556718 SF3A1Q15459 793 aaKnown RBP6.7□□□□□ -1.34
PRPF39-210ENST00000556718 HHIPL2Q6UWX4 724 aa6.7□□□□□ -1.34
PRPF39-210ENST00000556718 FERMT3Q86UX7 667 aa6.7□□□□□ -1.34
PRPF39-210ENST00000556718 FNIP1Q8TF40 1166 aa6.7□□□□□ -1.34
PRPF39-210ENST00000556718 SREK1Q8WXA9 508 aaKnown RBP6.7□□□□□ -1.34
PRPF39-210ENST00000556718 DRC1Q96MC2 740 aa6.7□□□□□ -1.34
PRPF39-210ENST00000556718 DSCC1Q9BVC3 393 aa6.7□□□□□ -1.34
PRPF39-210ENST00000556718 SUSD2Q9UGT4 822 aa6.7□□□□□ -1.34
PRPF39-210ENST00000556718 MEIS3P2A8K0S8 358 aa6.69□□□□□ -1.34
PRPF39-210ENST00000556718 H0Y8X5 98 aa6.69□□□□□ -1.34
PRPF39-210ENST00000556718 GSNP06396 782 aa6.69□□□□□ -1.34
PRPF39-210ENST00000556718 HDLBPQ00341 1268 aaKnown RBP6.69□□□□□ -1.34
PRPF39-210ENST00000556718 NT5DC1Q5TFE4 455 aa6.69□□□□□ -1.34
PRPF39-210ENST00000556718 C7orf61Q8IZ16 206 aa6.69□□□□□ -1.34
PRPF39-210ENST00000556718 REXO1Q8N1G1 1221 aaKnown RBP6.69□□□□□ -1.34
PRPF39-210ENST00000556718 NAT16Q8N8M0 369 aa6.69□□□□□ -1.34
PRPF39-210ENST00000556718 RNF34Q969K3 372 aa6.69□□□□□ -1.34
PRPF39-210ENST00000556718 PRR13Q9NZ81 148 aa6.69□□□□□ -1.34
PRPF39-210ENST00000556718 A0A1W2PQ27 194 aa6.68□□□□□ -1.34
PRPF39-210ENST00000556718 A0A1W2PQ64 194 aa6.68□□□□□ -1.34
PRPF39-210ENST00000556718 A0A1W2PQC6 194 aa6.68□□□□□ -1.34
PRPF39-210ENST00000556718 A0A1W2PQD8 194 aa6.68□□□□□ -1.34
PRPF39-210ENST00000556718 CYBBP04839 570 aa6.68□□□□□ -1.34
PRPF39-210ENST00000556718 ACRP10323 421 aa6.68□□□□□ -1.34
PRPF39-210ENST00000556718 ZNF76P36508 570 aa6.68□□□□□ -1.34
PRPF39-210ENST00000556718 FOXO4P98177 505 aa6.68□□□□□ -1.34
PRPF39-210ENST00000556718 APOBRQ0VD83 1088 aa6.68□□□□□ -1.34
PRPF39-210ENST00000556718 PUM1Q14671 1186 aaKnown RBP eCLIP6.68□□□□□ -1.34
PRPF39-210ENST00000556718 NAALADL2Q58DX5 795 aa6.68□□□□□ -1.34
PRPF39-210ENST00000556718 ZFYVE27Q5T4F4 411 aa6.68□□□□□ -1.34
PRPF39-210ENST00000556718 HLA-DQA1Q5Y7H0 255 aa6.68□□□□□ -1.34
PRPF39-210ENST00000556718 PAQR3Q6TCH7 311 aa6.68□□□□□ -1.34
PRPF39-210ENST00000556718 LIPIQ6XZB0 460 aa6.68□□□□□ -1.34
PRPF39-210ENST00000556718 NLGN1Q8N2Q7 840 aa6.68□□□□□ -1.34
PRPF39-210ENST00000556718 ZNF526Q8TF50 670 aaPredicted RBP6.68□□□□□ -1.34
PRPF39-210ENST00000556718 BORCS6Q96GS4 357 aa6.68□□□□□ -1.34
PRPF39-210ENST00000556718 SUCOQ9UBS9 1254 aaKnown RBP6.68□□□□□ -1.34
PRPF39-210ENST00000556718 SRGAP3O43295 1099 aa6.67□□□□□ -1.34
PRPF39-210ENST00000556718 TACR1P25103 407 aa6.67□□□□□ -1.34
PRPF39-210ENST00000556718 MC3RP41968 323 aa6.67□□□□□ -1.34
PRPF39-210ENST00000556718 HTRA3P83110 453 aa6.67□□□□□ -1.34
PRPF39-210ENST00000556718 DLX2Q07687 328 aaPredicted RBP6.67□□□□□ -1.34
PRPF39-210ENST00000556718 TARBP2Q15633 366 aaKnown RBP6.67□□□□□ -1.34
PRPF39-210ENST00000556718 UBXN11Q5T124 520 aa6.67□□□□□ -1.34
PRPF39-210ENST00000556718 TDRD10Q5VZ19 366 aaKnown RBP6.67□□□□□ -1.34
PRPF39-210ENST00000556718 BICRALQ6AI39 1079 aa6.67□□□□□ -1.34
PRPF39-210ENST00000556718 JAMLQ86YT9 394 aa6.67□□□□□ -1.34
PRPF39-210ENST00000556718 DUSP10Q9Y6W6 482 aa6.67□□□□□ -1.34
PRPF39-210ENST00000556718 PMF1-BGLAPU3KQ54 211 aa6.67□□□□□ -1.34
PRPF39-210ENST00000556718 FGF10O15520 208 aaPredicted RBP6.66□□□□□ -1.34
PRPF39-210ENST00000556718 ZNF165P49910 485 aa6.66□□□□□ -1.34
PRPF39-210ENST00000556718 PRR5P85299 388 aa6.66□□□□□ -1.34
PRPF39-210ENST00000556718 LRRFIP1Q32MZ4 808 aaKnown RBP6.66□□□□□ -1.34
PRPF39-210ENST00000556718 C9orf131Q5VYM1 1079 aa6.66□□□□□ -1.34
PRPF39-210ENST00000556718 DCAF15Q66K64 600 aa6.66□□□□□ -1.34
PRPF39-210ENST00000556718 SAPCD2Q86UD0 394 aa6.66□□□□□ -1.34
PRPF39-210ENST00000556718 PPFIBP1Q86W92 1011 aa6.66□□□□□ -1.34
PRPF39-210ENST00000556718 CCDC144CPQ8IYA2 1237 aa6.66□□□□□ -1.34
PRPF39-210ENST00000556718 BRF1Q92994 677 aa6.66□□□□□ -1.34
PRPF39-210ENST00000556718 CCSER2Q9H7U1 834 aa6.66□□□□□ -1.34
PRPF39-210ENST00000556718 USP40Q9NVE5 1235 aa6.66□□□□□ -1.34
PRPF39-210ENST00000556718 GGT7Q9UJ14 662 aa6.66□□□□□ -1.34
PRPF39-210ENST00000556718 LOC105371045A0A1W2PR82 267 aa6.65□□□□□ -1.34
PRPF39-210ENST00000556718 F8W031 263 aaPredicted RBP6.65□□□□□ -1.34
PRPF39-210ENST00000556718 ZNF445P59923 1031 aa6.65□□□□□ -1.34
PRPF39-210ENST00000556718 GNL2Q13823 731 aaKnown RBP6.65□□□□□ -1.34
PRPF39-210ENST00000556718 CWF19L1Q69YN2 538 aaKnown RBP6.65□□□□□ -1.34
PRPF39-210ENST00000556718 NT5DC4Q86YG4 428 aa6.65□□□□□ -1.34
PRPF39-210ENST00000556718 SLITRK4Q8IW52 837 aa6.65□□□□□ -1.34
PRPF39-210ENST00000556718 NKD1Q969G9 470 aa6.65□□□□□ -1.34
PRPF39-210ENST00000556718 SRRTQ9BXP5 876 aaKnown RBP6.65□□□□□ -1.34
PRPF39-210ENST00000556718 BCAS3Q9H6U6 928 aa6.65□□□□□ -1.34
PRPF39-210ENST00000556718 RXFP1Q9HBX9 757 aa6.65□□□□□ -1.34
PRPF39-210ENST00000556718 PDLIM7Q9NR12 457 aa6.65□□□□□ -1.34
PRPF39-210ENST00000556718 A0A1W2PQJ5 194 aa6.64□□□□□ -1.35
PRPF39-210ENST00000556718 K7ESM1 405 aa6.64□□□□□ -1.35
PRPF39-210ENST00000556718 IFNGR1P15260 489 aa6.64□□□□□ -1.35
PRPF39-210ENST00000556718 FANCCQ00597 558 aa6.64□□□□□ -1.35
PRPF39-210ENST00000556718 DDX1Q92499 740 aaKnown RBP6.64□□□□□ -1.35
PRPF39-210ENST00000556718 FCRL3Q96P31 734 aaPredicted RBP6.64□□□□□ -1.35
PRPF39-210ENST00000556718 TGIF2Q9GZN2 237 aa6.64□□□□□ -1.35
PRPF39-210ENST00000556718 FAM86C1Q9NVL1 165 aa6.64□□□□□ -1.35
PRPF39-210ENST00000556718 PPP1R1BQ9UD71 204 aaPredicted RBP6.64□□□□□ -1.35
PRPF39-210ENST00000556718 SH3D21A4FU49 640 aa6.63□□□□□ -1.35
PRPF39-210ENST00000556718 ASGR2P07307 311 aa6.63□□□□□ -1.35
PRPF39-210ENST00000556718 PMS1P54277 932 aaKnown RBP6.63□□□□□ -1.35
PRPF39-210ENST00000556718 AXDND1Q5T1B0 1012 aaPredicted RBP6.63□□□□□ -1.35
PRPF39-210ENST00000556718 LDLRAD1Q5T700 205 aa6.63□□□□□ -1.35
PRPF39-210ENST00000556718 UBXN4Q92575 508 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms