RNA–Protein interactions for RNA: ENST00000555382.5

PRKCH-215, Transcript of protein kinase C eta, human

TSL 3

Gene PRKCH, Length 691 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-215	ENST00000555382	UPF3B	Q9BZI7	483 aa	Known RBP	11.21	□□□□□ -0.61
PRKCH-215	ENST00000555382	KAT14	Q9H8E8	782 aa		11.21	□□□□□ -0.61
PRKCH-215	ENST00000555382	STX8	Q9UNK0	236 aa		11.21	□□□□□ -0.61
PRKCH-215	ENST00000555382	SMCHD1	A6NHR9	2005 aa		11.21	□□□□□ -0.62
PRKCH-215	ENST00000555382	USP17L15	C9J2P7	530 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	USP17L13	C9JLJ4	530 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	USP17L11	C9JVI0	530 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	USP17L18	D6R9N7	530 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	USP17L22	D6RA61	530 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	USP17L17	D6RBQ6	530 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	USP17L19	D6RCP7	530 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	USP17L20	D6RJB6	530 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382		F5H6K3	240 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	WDR46	O15213	610 aa	Known RBP	11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	DNAJB2	P25686	324 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	HOXD11	P31277	338 aa	Predicted RBP	11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	CCNA1	P78396	465 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	ATP2B2	Q01814	1243 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	TLE2	Q04725	743 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	KLRC3	Q07444	240 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	USP17L24	Q0WX57	530 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	GPATCH4	Q5T3I0	446 aa	Known RBP	11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	RASIP1	Q5U651	963 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	APOA5	Q6Q788	366 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382		Q6ZUG5	572 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	CATIP	Q7Z7H3	387 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	ARRDC4	Q8NCT1	418 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	PNMA1	Q8ND90	353 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	ACER1	Q8TDN7	264 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	RNPC3	Q96LT9	517 aa	Known RBP	11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	PRDM5	Q9NQX1	630 aa	Predicted RBP	11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	PHF24	Q9UPV7	400 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	MYO9B	Q13459	2157 aa		11.2	□□□□□ -0.62
PRKCH-215	ENST00000555382	CCDC196	A0A1B0GTZ2	297 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	CCDC69	A6NI79	296 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	KBTBD13	C9JR72	458 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	COBL	O75128	1261 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	FDX1	P10109	184 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	PDHB	P11177	359 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	ADORA2A	P29274	412 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	CNGA1	P29973	690 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	KIF5B	P33176	963 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	ADCYAP1R1	P41586	468 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	GNAQ	P50148	359 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	FGD1	P98174	961 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	ASPRV1	Q53RT3	343 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	ANO1	Q5XXA6	986 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	BTNL9	Q6UXG8	535 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	SYNE3	Q6ZMZ3	975 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	CHST3	Q7LGC8	479 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	ZNF654	Q8IZM8	581 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	BRF1	Q92994	677 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	ZSCAN31	Q96LW9	406 aa	Predicted RBP	11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	LZTS2	Q9BRK4	669 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	ZKSCAN3	Q9BRR0	538 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	LIMCH1	Q9UPQ0	1083 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	SLC12A7	Q9Y666	1083 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	PLXNA1	Q9UIW2	1896 aa		11.19	□□□□□ -0.62
PRKCH-215	ENST00000555382	PALM3	A6NDB9	673 aa	Predicted RBP	11.18	□□□□□ -0.62
PRKCH-215	ENST00000555382	NDUFB10	O96000	172 aa		11.18	□□□□□ -0.62
PRKCH-215	ENST00000555382	CPA1	P15085	419 aa		11.18	□□□□□ -0.62
PRKCH-215	ENST00000555382	AK2	P54819	239 aa		11.18	□□□□□ -0.62
PRKCH-215	ENST00000555382	GRM4	Q14833	912 aa		11.18	□□□□□ -0.62
PRKCH-215	ENST00000555382	CCAR1	Q8IX12	1150 aa	Known RBP	11.18	□□□□□ -0.62
PRKCH-215	ENST00000555382	FANCB	Q8NB91	859 aa		11.18	□□□□□ -0.62
PRKCH-215	ENST00000555382	ATXN2L	Q8WWM7	1075 aa	Known RBP	11.18	□□□□□ -0.62
PRKCH-215	ENST00000555382	ASB2	Q96Q27	587 aa		11.18	□□□□□ -0.62
PRKCH-215	ENST00000555382	FEZ1	Q99689	392 aa		11.18	□□□□□ -0.62
PRKCH-215	ENST00000555382	MOV10L1	Q9BXT6	1211 aa	Known RBP	11.18	□□□□□ -0.62
PRKCH-215	ENST00000555382	ZNF576	Q9H609	170 aa		11.18	□□□□□ -0.62
PRKCH-215	ENST00000555382	RBM28	Q9NW13	759 aa	Known RBP	11.18	□□□□□ -0.62
PRKCH-215	ENST00000555382	ZNFX1	Q9P2E3	1918 aa	Known RBP	11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	SYNGAP1	Q96PV0	1343 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	ZBTB43	O43298	467 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	DHX16	O60231	1041 aa	Known RBP	11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	CLTB	P09497	229 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	PDIA3	P30101	505 aa	Known RBP	11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	SLC1A4	P43007	532 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	ZNF543	Q08ER8	600 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	ADGRE1	Q14246	886 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	ZYX	Q15942	572 aa	Known RBP	11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	SLFN13	Q68D06	897 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	NFXL1	Q6ZNB6	911 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	ANKRD33	Q7Z3H0	272 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	FAM160B2	Q86V87	743 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	CLEC10A	Q8IUN9	316 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	FAM177A1	Q8N128	213 aa	Predicted RBP	11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	SHCBP1	Q8NEM2	672 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	ADAMTS19	Q8TE59	1207 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	CHURC1	Q8WUH1	139 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	FERMT2	Q96AC1	680 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	TCEANC2	Q96MN5	208 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	SENP2	Q9HC62	589 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	GPHN	Q9NQX3	736 aa	Predicted RBP	11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	FEM1B	Q9UK73	627 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	PNMA2	Q9UL42	364 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	BRPF3	Q9ULD4	1205 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	ADAMTS5	Q9UNA0	930 aa		11.17	□□□□□ -0.62
PRKCH-215	ENST00000555382	MYH6	P13533	1939 aa		11.17	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms