RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 DNAJC8O75937 253 aaPredicted RBP6.96□□□□□ -1.3
SCFD1-209ENST00000553280 EOMESO95936 686 aa6.96□□□□□ -1.3
SCFD1-209ENST00000553280 SCG5P05408 212 aa6.96□□□□□ -1.3
SCFD1-209ENST00000553280 PMLP29590 882 aa6.96□□□□□ -1.3
SCFD1-209ENST00000553280 GFRA1P56159 465 aa6.96□□□□□ -1.3
SCFD1-209ENST00000553280 EVA1CP58658 441 aa6.96□□□□□ -1.3
SCFD1-209ENST00000553280 EXOSC10Q01780 885 aaKnown RBP6.96□□□□□ -1.3
SCFD1-209ENST00000553280 SF1Q15637 639 aaKnown RBP6.96□□□□□ -1.3
SCFD1-209ENST00000553280 IFI16Q16666 785 aaKnown RBP6.96□□□□□ -1.3
SCFD1-209ENST00000553280 AOC3Q16853 763 aa6.96□□□□□ -1.3
SCFD1-209ENST00000553280 CNNM4Q6P4Q7 775 aa6.96□□□□□ -1.3
SCFD1-209ENST00000553280 AHI1Q8N157 1196 aa6.96□□□□□ -1.3
SCFD1-209ENST00000553280 AFAP1L2Q8N4X5 818 aa6.96□□□□□ -1.3
SCFD1-209ENST00000553280 FIBCD1Q8N539 461 aa6.96□□□□□ -1.3
SCFD1-209ENST00000553280 PTPRN2Q92932 1015 aa6.96□□□□□ -1.3
SCFD1-209ENST00000553280 COX4I2Q96KJ9 171 aa6.96□□□□□ -1.3
SCFD1-209ENST00000553280 NOL6Q9H6R4 1146 aaKnown RBP6.96□□□□□ -1.3
SCFD1-209ENST00000553280 SLC52A2Q9HAB3 445 aa6.96□□□□□ -1.3
SCFD1-209ENST00000553280 CYP26B1Q9NR63 512 aa6.96□□□□□ -1.3
SCFD1-209ENST00000553280 MCM8Q9UJA3 840 aa6.96□□□□□ -1.3
SCFD1-209ENST00000553280 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.95□□□□□ -1.3
SCFD1-209ENST00000553280 FAM83GA6ND36 823 aa6.95□□□□□ -1.3
SCFD1-209ENST00000553280 LRRN2O75325 713 aa6.95□□□□□ -1.3
SCFD1-209ENST00000553280 NPTXRO95502 500 aa6.95□□□□□ -1.3
SCFD1-209ENST00000553280 PRKCQQ04759 706 aa6.95□□□□□ -1.3
SCFD1-209ENST00000553280 SNW1Q13573 536 aaKnown RBP6.95□□□□□ -1.3
SCFD1-209ENST00000553280 PPP2R5DQ14738 602 aa6.95□□□□□ -1.3
SCFD1-209ENST00000553280 ZNF792Q3KQV3 632 aa6.95□□□□□ -1.3
SCFD1-209ENST00000553280 CCDC181Q5TID7 509 aa6.95□□□□□ -1.3
SCFD1-209ENST00000553280 DDX46Q7L014 1031 aaKnown RBP6.95□□□□□ -1.3
SCFD1-209ENST00000553280 FAM214BQ7L5A3 538 aa6.95□□□□□ -1.3
SCFD1-209ENST00000553280 PPM1KQ8N3J5 372 aa6.95□□□□□ -1.3
SCFD1-209ENST00000553280 MISP3Q96FF7 219 aa6.95□□□□□ -1.3
SCFD1-209ENST00000553280 HRASLS5Q96KN8 279 aa6.95□□□□□ -1.3
SCFD1-209ENST00000553280 FMNL2Q96PY5 1086 aa6.95□□□□□ -1.3
SCFD1-209ENST00000553280 CEP89Q96ST8 783 aa6.95□□□□□ -1.3
SCFD1-209ENST00000553280 NDOR1Q9UHB4 597 aa6.95□□□□□ -1.3
SCFD1-209ENST00000553280 SF3B6Q9Y3B4 125 aaKnown RBP6.95□□□□□ -1.3
SCFD1-209ENST00000553280 CNTNAP4Q9C0A0 1308 aa6.95□□□□□ -1.3
SCFD1-209ENST00000553280 EYA4O95677 639 aa6.94□□□□□ -1.3
SCFD1-209ENST00000553280 CPP00450 1065 aa6.94□□□□□ -1.3
SCFD1-209ENST00000553280 ASLP04424 464 aa6.94□□□□□ -1.3
SCFD1-209ENST00000553280 NTRK3Q16288 839 aa6.94□□□□□ -1.3
SCFD1-209ENST00000553280 SLC35F1Q5T1Q4 408 aa6.94□□□□□ -1.3
SCFD1-209ENST00000553280 MAMDC2Q7Z304 686 aaPredicted RBP6.94□□□□□ -1.3
SCFD1-209ENST00000553280 BRAPQ7Z569 592 aa6.94□□□□□ -1.3
SCFD1-209ENST00000553280 TMEM145Q8NBT3 493 aa6.94□□□□□ -1.3
SCFD1-209ENST00000553280 C1orf159Q96HA4 380 aa6.94□□□□□ -1.3
SCFD1-209ENST00000553280 MKNK2Q9HBH9 465 aa6.94□□□□□ -1.3
SCFD1-209ENST00000553280 GFOD1Q9NXC2 390 aa6.94□□□□□ -1.3
SCFD1-209ENST00000553280 CHPF2Q9P2E5 772 aa6.94□□□□□ -1.3
SCFD1-209ENST00000553280 GTF2IRD1Q9UHL9 959 aa6.94□□□□□ -1.3
SCFD1-209ENST00000553280 VAV3Q9UKW4 847 aa6.94□□□□□ -1.3
SCFD1-209ENST00000553280 TPX2Q9ULW0 747 aaKnown RBP6.94□□□□□ -1.3
SCFD1-209ENST00000553280 G3BP2Q9UN86 482 aaKnown RBP6.94□□□□□ -1.3
SCFD1-209ENST00000553280 TMEM265A0A087WTH1 108 aa6.93□□□□□ -1.3
SCFD1-209ENST00000553280 BTBD11A6QL63 1104 aa6.93□□□□□ -1.3
SCFD1-209ENST00000553280 SIGLEC6O43699 453 aa6.93□□□□□ -1.3
SCFD1-209ENST00000553280 SNRPB2P08579 225 aaKnown RBP6.93□□□□□ -1.3
SCFD1-209ENST00000553280 CPEP16870 476 aa6.93□□□□□ -1.3
SCFD1-209ENST00000553280 TXKP42681 527 aa6.93□□□□□ -1.3
SCFD1-209ENST00000553280 KCNJ6P48051 423 aa6.93□□□□□ -1.3
SCFD1-209ENST00000553280 AMPD2Q01433 879 aa6.93□□□□□ -1.3
SCFD1-209ENST00000553280 BRDTQ58F21 947 aaPredicted RBP6.93□□□□□ -1.3
SCFD1-209ENST00000553280 TMC3Q7Z5M5 1100 aa6.93□□□□□ -1.3
SCFD1-209ENST00000553280 FGD2Q7Z6J4 655 aa6.93□□□□□ -1.3
SCFD1-209ENST00000553280 ATL2Q8NHH9 583 aa6.93□□□□□ -1.3
SCFD1-209ENST00000553280 SCLYQ96I15 445 aa6.93□□□□□ -1.3
SCFD1-209ENST00000553280 MAGEB10Q96LZ2 347 aaPredicted RBP6.93□□□□□ -1.3
SCFD1-209ENST00000553280 ZDHHC15Q96MV8 337 aa6.93□□□□□ -1.3
SCFD1-209ENST00000553280 KCNH3Q9ULD8 1083 aa6.93□□□□□ -1.3
SCFD1-209ENST00000553280 TNPO3Q9Y5L0 923 aaKnown RBP6.93□□□□□ -1.3
SCFD1-209ENST00000553280 BLACEA4D250 179 aa6.92□□□□□ -1.3
SCFD1-209ENST00000553280 VAMP4O75379 141 aa6.92□□□□□ -1.3
SCFD1-209ENST00000553280 FUT4P22083 530 aa6.92□□□□□ -1.3
SCFD1-209ENST00000553280 CYP4F3Q08477 520 aa6.92□□□□□ -1.3
SCFD1-209ENST00000553280 ODR4Q5SWX8 454 aa6.92□□□□□ -1.3
SCFD1-209ENST00000553280 WWC2Q6AWC2 1192 aa6.92□□□□□ -1.3
SCFD1-209ENST00000553280 STRA8Q7Z7C7 330 aa6.92□□□□□ -1.3
SCFD1-209ENST00000553280 DTWD2Q8NBA8 298 aa6.92□□□□□ -1.3
SCFD1-209ENST00000553280 ENOX1Q8TC92 643 aaKnown RBP6.92□□□□□ -1.3
SCFD1-209ENST00000553280 LEO1Q8WVC0 666 aaPredicted RBP6.92□□□□□ -1.3
SCFD1-209ENST00000553280 Q96M66 194 aa6.92□□□□□ -1.3
SCFD1-209ENST00000553280 MTFR1LQ9H019 292 aa6.92□□□□□ -1.3
SCFD1-209ENST00000553280 GOLGA2P5Q9HBQ8 144 aa6.92□□□□□ -1.3
SCFD1-209ENST00000553280 CHST7Q9NS84 486 aa6.92□□□□□ -1.3
SCFD1-209ENST00000553280 ADAMTS6Q9UKP5 1117 aa6.92□□□□□ -1.3
SCFD1-209ENST00000553280 GPR55Q9Y2T6 319 aaPredicted RBP6.92□□□□□ -1.3
SCFD1-209ENST00000553280 TCRBV16S1A1N1A0A5B0 115 aa6.91□□□□□ -1.3
SCFD1-209ENST00000553280 GNAT3A8MTJ3 354 aa6.91□□□□□ -1.3
SCFD1-209ENST00000553280 RBAK-RBAKDNI3L0D1 243 aa6.91□□□□□ -1.3
SCFD1-209ENST00000553280 OPA1O60313 960 aa6.91□□□□□ -1.3
SCFD1-209ENST00000553280 RNASE1P07998 156 aaKnown RBP6.91□□□□□ -1.3
SCFD1-209ENST00000553280 ECI1P42126 302 aa6.91□□□□□ -1.3
SCFD1-209ENST00000553280 KIR3DL1P43629 444 aa6.91□□□□□ -1.3
SCFD1-209ENST00000553280 NEK4P51957 841 aa6.91□□□□□ -1.3
SCFD1-209ENST00000553280 POU4F1Q01851 419 aa6.91□□□□□ -1.3
SCFD1-209ENST00000553280 PCBP1Q15365 356 aaKnown RBP eCLIP6.91□□□□□ -1.3
SCFD1-209ENST00000553280 DHCR24Q15392 516 aa6.91□□□□□ -1.3
SCFD1-209ENST00000553280 SFRP5Q5T4F7 317 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms