RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 KDM4FA0A1W2PPD8 638 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 PHACTR2O75167 634 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 ERCC3P19447 782 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 TECP42680 631 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 CYP27A1Q02318 531 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 TRIM14Q14142 442 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 CCDC122Q5T0U0 273 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 FAM182BQ5T319 152 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 SPATA31A5Q5VU36 1347 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 ANKRD40Q6AI12 368 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 USP17L2Q6R6M4 530 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 SPATA31A7Q8IWB4 1347 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 CSGALNACT2Q8N6G5 542 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 MMS19Q96T76 1030 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 DNAJC7Q99615 494 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 PYM1Q9BRP8 204 aaKnown RBP8.41□□□□□ -1.06
LIMA1-213ENST00000552720 TUBGCP2Q9BSJ2 902 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 LACRTQ9GZZ8 138 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 VAT1LQ9HCJ6 419 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 BARHL2Q9NY43 387 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 VPS18Q9P253 973 aa8.41□□□□□ -1.06
LIMA1-213ENST00000552720 LRRIQ3A6PVS8 624 aaPredicted RBP8.4□□□□□ -1.06
LIMA1-213ENST00000552720 ZNF185O15231 689 aa8.4□□□□□ -1.06
LIMA1-213ENST00000552720 CCNT1O60563 726 aaKnown RBP8.4□□□□□ -1.06
LIMA1-213ENST00000552720 ZMYND10O75800 440 aa8.4□□□□□ -1.06
LIMA1-213ENST00000552720 RHOBTB3O94955 611 aa8.4□□□□□ -1.06
LIMA1-213ENST00000552720 LDHBP07195 334 aaKnown RBP8.4□□□□□ -1.06
LIMA1-213ENST00000552720 PLEKP08567 350 aaPredicted RBP8.4□□□□□ -1.06
LIMA1-213ENST00000552720 FAM193AP78312 1265 aa8.4□□□□□ -1.06
LIMA1-213ENST00000552720 PDE4DQ08499 809 aa8.4□□□□□ -1.06
LIMA1-213ENST00000552720 KCNB1Q14721 858 aa8.4□□□□□ -1.06
LIMA1-213ENST00000552720 FAM98CQ17RN3 349 aaKnown RBP8.4□□□□□ -1.06
LIMA1-213ENST00000552720 WHAMMP3Q1A5X7 153 aa8.4□□□□□ -1.06
LIMA1-213ENST00000552720 CABP7Q86V35 215 aa8.4□□□□□ -1.06
LIMA1-213ENST00000552720 HNRNPLLQ8WVV9 542 aaKnown RBP8.4□□□□□ -1.06
LIMA1-213ENST00000552720 GDAP1L1Q96MZ0 367 aa8.4□□□□□ -1.06
LIMA1-213ENST00000552720 CCSER1Q9C0I3 900 aa8.4□□□□□ -1.06
LIMA1-213ENST00000552720 SH3GLB2Q9NR46 395 aa8.4□□□□□ -1.06
LIMA1-213ENST00000552720 CAPN11Q9UMQ6 739 aa8.4□□□□□ -1.06
LIMA1-213ENST00000552720 THRAP3Q9Y2W1 955 aaKnown RBP8.4□□□□□ -1.06
LIMA1-213ENST00000552720 PALM3A6NDB9 673 aaPredicted RBP8.4□□□□□ -1.07
LIMA1-213ENST00000552720 KLRF2D3W0D1 207 aa8.4□□□□□ -1.07
LIMA1-213ENST00000552720 PSMA7O14818 248 aa8.4□□□□□ -1.07
LIMA1-213ENST00000552720 GNPATO15228 680 aa8.4□□□□□ -1.07
LIMA1-213ENST00000552720 TRIM21P19474 475 aaKnown RBP8.4□□□□□ -1.07
LIMA1-213ENST00000552720 RASA1P20936 1047 aa8.4□□□□□ -1.07
LIMA1-213ENST00000552720 EEF1GP26641 437 aaKnown RBP8.4□□□□□ -1.07
LIMA1-213ENST00000552720 LMAN1P49257 510 aa8.4□□□□□ -1.07
LIMA1-213ENST00000552720 NAPAP54920 295 aa8.4□□□□□ -1.07
LIMA1-213ENST00000552720 CASP8Q14790 479 aa8.4□□□□□ -1.07
LIMA1-213ENST00000552720 TAF3Q5VWG9 929 aa8.4□□□□□ -1.07
LIMA1-213ENST00000552720 HDXQ7Z353 690 aa8.4□□□□□ -1.07
LIMA1-213ENST00000552720 TRAPPC11Q7Z392 1133 aa8.4□□□□□ -1.07
LIMA1-213ENST00000552720 KRT26Q7Z3Y9 468 aa8.4□□□□□ -1.07
LIMA1-213ENST00000552720 ZNF444Q8N0Y2 327 aaPredicted RBP8.4□□□□□ -1.07
LIMA1-213ENST00000552720 SMCR8Q8TEV9 937 aaPredicted RBP8.4□□□□□ -1.07
LIMA1-213ENST00000552720 SMARCC1Q92922 1105 aaPredicted RBP8.4□□□□□ -1.07
LIMA1-213ENST00000552720 CNOT6LQ96LI5 555 aaKnown RBP8.4□□□□□ -1.07
LIMA1-213ENST00000552720 TRIM9Q9C026 710 aa8.4□□□□□ -1.07
LIMA1-213ENST00000552720 TTYH3Q9C0H2 523 aa8.4□□□□□ -1.07
LIMA1-213ENST00000552720 ANKRD2Q9GZV1 360 aa8.4□□□□□ -1.07
LIMA1-213ENST00000552720 THAP9Q9H5L6 903 aa8.4□□□□□ -1.07
LIMA1-213ENST00000552720 TMEM260Q9NX78 707 aa8.4□□□□□ -1.07
LIMA1-213ENST00000552720 ANKIB1Q9P2G1 1089 aa8.4□□□□□ -1.07
LIMA1-213ENST00000552720 FAN1Q9Y2M0 1017 aa8.4□□□□□ -1.07
LIMA1-213ENST00000552720 MYH7BA7E2Y1 1941 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 SNED1Q8TER0 1413 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 A0A1W2PQC6 194 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 SRGNP10124 158 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 ASIC1P78348 528 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 TBC1D8BQ0IIM8 1120 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 MIIPQ5JXC2 388 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 GSPT2Q8IYD1 628 aaKnown RBP8.39□□□□□ -1.07
LIMA1-213ENST00000552720 KIAA0895Q8NCT3 520 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 ANKS1AQ92625 1134 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 PCMTD1Q96MG8 357 aaPredicted RBP8.39□□□□□ -1.07
LIMA1-213ENST00000552720 MMTAG2Q9BU76 263 aaKnown RBP8.39□□□□□ -1.07
LIMA1-213ENST00000552720 UBA5Q9GZZ9 404 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 SLC39A2Q9NP94 309 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 EXOC1Q9NV70 894 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 CALCOCO1Q9P1Z2 691 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 MYO1AQ9UBC5 1043 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 MAGEC2Q9UBF1 373 aaPredicted RBP8.39□□□□□ -1.07
LIMA1-213ENST00000552720 BIN2Q9UBW5 565 aaPredicted RBP8.39□□□□□ -1.07
LIMA1-213ENST00000552720 NARFQ9UHQ1 456 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 AHDC1Q5TGY3 1603 aaPredicted RBP8.39□□□□□ -1.07
LIMA1-213ENST00000552720 BTAF1O14981 1849 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 MACROD2A1Z1Q3 448 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 SMCO2A6NFE2 343 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 PSMD14O00487 310 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 ZNF263O14978 683 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 EPHB6O15197 1021 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 OR52Z1P0C646 297 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 DNM2P50570 870 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 PIP4K2BP78356 416 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 STIM1Q13586 685 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 KIAA1328Q86T90 577 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 PLCD3Q8N3E9 789 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 CCDC148Q8NFR7 591 aa8.39□□□□□ -1.07
LIMA1-213ENST00000552720 P2RX5Q93086 422 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms