RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 ADAMTS6Q9UKP5 1117 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 CD2APQ9Y5K6 639 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.14□□□□□ -1.59
LIMA1-208ENST00000551691 IGSF1Q8N6C5 1336 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 KIF1AQ12756 1690 aa5.14□□□□□ -1.59
LIMA1-208ENST00000551691 ATP7BP35670 1465 aa5.13□□□□□ -1.59
LIMA1-208ENST00000551691 IQGAP3Q86VI3 1631 aa5.13□□□□□ -1.59
LIMA1-208ENST00000551691 EXOC5O00471 708 aa5.13□□□□□ -1.59
LIMA1-208ENST00000551691 ZNF862O60290 1169 aa5.13□□□□□ -1.59
LIMA1-208ENST00000551691 BPNT1O95861 308 aa5.13□□□□□ -1.59
LIMA1-208ENST00000551691 JUNBP17275 347 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-208ENST00000551691 ITPKAP23677 461 aa5.13□□□□□ -1.59
LIMA1-208ENST00000551691 LIG3P49916 1009 aa5.13□□□□□ -1.59
LIMA1-208ENST00000551691 TTLL4Q14679 1199 aa5.13□□□□□ -1.59
LIMA1-208ENST00000551691 RGL3Q3MIN7 710 aa5.13□□□□□ -1.59
LIMA1-208ENST00000551691 EGFLAMQ63HQ2 1017 aa5.13□□□□□ -1.59
LIMA1-208ENST00000551691 TTBK2Q6IQ55 1244 aa5.13□□□□□ -1.59
LIMA1-208ENST00000551691 PRPF40BQ6NWY9 871 aaKnown RBP5.13□□□□□ -1.59
LIMA1-208ENST00000551691 TOM1L2Q6ZVM7 507 aa5.13□□□□□ -1.59
LIMA1-208ENST00000551691 GOLM1Q8NBJ4 401 aa5.13□□□□□ -1.59
LIMA1-208ENST00000551691 DDX54Q8TDD1 881 aaKnown RBP5.13□□□□□ -1.59
LIMA1-208ENST00000551691 MKL1Q969V6 931 aa5.13□□□□□ -1.59
LIMA1-208ENST00000551691 DEPDC7Q96QD5 511 aa5.13□□□□□ -1.59
LIMA1-208ENST00000551691 PRAM1Q96QH2 718 aa5.13□□□□□ -1.59
LIMA1-208ENST00000551691 SRRTQ9BXP5 876 aaKnown RBP5.13□□□□□ -1.59
LIMA1-208ENST00000551691 RC3H2Q9HBD1 1191 aaKnown RBP5.13□□□□□ -1.59
LIMA1-208ENST00000551691 TRPM3Q9HCF6 1732 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-208ENST00000551691 USP19O94966 1318 aa5.13□□□□□ -1.59
LIMA1-208ENST00000551691 RGPD3A6NKT7 1758 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-208ENST00000551691 RGPD4Q7Z3J3 1758 aa5.13□□□□□ -1.59
LIMA1-208ENST00000551691 GPRASP1Q5JY77 1395 aa5.13□□□□□ -1.59
LIMA1-208ENST00000551691 PRAG1Q86YV5 1406 aa5.13□□□□□ -1.59
LIMA1-208ENST00000551691 ALS2Q96Q42 1657 aa5.12□□□□□ -1.59
LIMA1-208ENST00000551691 ITIH2P19823 946 aa5.12□□□□□ -1.59
LIMA1-208ENST00000551691 ETFBP38117 255 aa5.12□□□□□ -1.59
LIMA1-208ENST00000551691 PPP2R3AQ06190 1150 aa5.12□□□□□ -1.59
LIMA1-208ENST00000551691 TCEAL1Q15170 157 aa5.12□□□□□ -1.59
LIMA1-208ENST00000551691 NOL8Q76FK4 1167 aaKnown RBP5.12□□□□□ -1.59
LIMA1-208ENST00000551691 NLGN1Q8N2Q7 840 aa5.12□□□□□ -1.59
LIMA1-208ENST00000551691 HNRNPLLQ8WVV9 542 aaKnown RBP5.12□□□□□ -1.59
LIMA1-208ENST00000551691 KCNB2Q92953 911 aa5.12□□□□□ -1.59
LIMA1-208ENST00000551691 NT5C1AQ9BXI3 368 aa5.12□□□□□ -1.59
LIMA1-208ENST00000551691 KRTAP4-7Q9BYR0 210 aa5.12□□□□□ -1.59
LIMA1-208ENST00000551691 PRDM10Q9NQV6 1147 aa5.12□□□□□ -1.59
LIMA1-208ENST00000551691 PRDM7Q9NQW5 492 aa5.12□□□□□ -1.59
LIMA1-208ENST00000551691 UBP1Q9NZI7 540 aa5.12□□□□□ -1.59
LIMA1-208ENST00000551691 CRIM1Q9NZV1 1036 aa5.12□□□□□ -1.59
LIMA1-208ENST00000551691 ABCC11Q96J66 1382 aa5.12□□□□□ -1.59
LIMA1-208ENST00000551691 ARHGEF28Q8N1W1 1705 aaKnown RBP5.11□□□□□ -1.59
LIMA1-208ENST00000551691 KAT6BQ8WYB5 2073 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 CDC45O75419 566 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 GCP02774 474 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 PF4P02776 101 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 RNASE1P07998 156 aaKnown RBP5.11□□□□□ -1.59
LIMA1-208ENST00000551691 CELA3AP09093 270 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 SOX9P48436 509 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 EIF6P56537 245 aaKnown RBP5.11□□□□□ -1.59
LIMA1-208ENST00000551691 ID3Q02535 119 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 AP3B2Q13367 1082 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 CAMK2GQ13555 558 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-208ENST00000551691 RAB33AQ14088 237 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 CWF19L2Q2TBE0 894 aaKnown RBP5.11□□□□□ -1.59
LIMA1-208ENST00000551691 CYP27C1Q4G0S4 372 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 SEZ6Q53EL9 994 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 CCDC81Q6ZN84 652 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 FILIP1Q7Z7B0 1213 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 SMYD4Q8IYR2 804 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-208ENST00000551691 C3orf58Q8NDZ4 430 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 NETO1Q8TDF5 533 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 STK35Q8TDR2 534 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 EAF1Q96JC9 268 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-208ENST00000551691 MIR1-1HGQ9H1L0 117 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 DISC1Q9NRI5 854 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 MBNL3Q9NUK0 354 aaKnown RBP5.11□□□□□ -1.59
LIMA1-208ENST00000551691 PRKAG3Q9UGI9 489 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 TLR6Q9Y2C9 796 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 A0A0C4DFX4 3053 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 CLTCL1P53675 1640 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 PARP4Q9UKK3 1724 aaKnown RBP5.11□□□□□ -1.59
LIMA1-208ENST00000551691 CRYBG1Q9Y4K1 1723 aa5.11□□□□□ -1.59
LIMA1-208ENST00000551691 A0A0G2JLW4 131 aa5.1□□□□□ -1.59
LIMA1-208ENST00000551691 EIF4EBP3O60516 100 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-208ENST00000551691 DNAJC6O75061 913 aa5.1□□□□□ -1.59
LIMA1-208ENST00000551691 NEFMP07197 916 aa5.1□□□□□ -1.59
LIMA1-208ENST00000551691 CTCFP49711 727 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-208ENST00000551691 CRB1P82279 1406 aa5.1□□□□□ -1.59
LIMA1-208ENST00000551691 LMNB2Q03252 620 aa5.1□□□□□ -1.59
LIMA1-208ENST00000551691 PAPPAQ13219 1627 aa5.1□□□□□ -1.59
LIMA1-208ENST00000551691 COL24A1Q17RW2 1714 aa5.1□□□□□ -1.59
LIMA1-208ENST00000551691 PCNX4Q63HM2 1172 aa5.1□□□□□ -1.59
LIMA1-208ENST00000551691 FBXL19Q6PCT2 694 aa5.1□□□□□ -1.59
LIMA1-208ENST00000551691 KCPQ6ZWJ8 1503 aa5.1□□□□□ -1.59
LIMA1-208ENST00000551691 TOP6BLQ8N6T0 577 aa5.1□□□□□ -1.59
LIMA1-208ENST00000551691 LRRN4CLQ8ND94 238 aa5.1□□□□□ -1.59
LIMA1-208ENST00000551691 SMC1BQ8NDV3 1235 aa5.1□□□□□ -1.59
LIMA1-208ENST00000551691 PHC3Q8NDX5 983 aa5.1□□□□□ -1.59
LIMA1-208ENST00000551691 GLIS3Q8NEA6 775 aa5.1□□□□□ -1.59
LIMA1-208ENST00000551691 ATXN3LQ9H3M9 355 aa5.1□□□□□ -1.59
LIMA1-208ENST00000551691 SPC25Q9HBM1 224 aa5.1□□□□□ -1.59
LIMA1-208ENST00000551691 CWC22Q9HCG8 908 aaKnown RBP5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms