RNA–Protein interactions for RNA: ENST00000550280.1

SMARCD1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-208ENST00000550280 VPS53Q5VIR6 699 aa13.77□□□□□ -0.21
SMARCD1-208ENST00000550280 TAPT1Q6NXT6 567 aa13.77□□□□□ -0.21
SMARCD1-208ENST00000550280 CXCL17Q6UXB2 119 aa13.77□□□□□ -0.21
SMARCD1-208ENST00000550280 KCTD1Q719H9 257 aa13.77□□□□□ -0.21
SMARCD1-208ENST00000550280 STAG1Q8WVM7 1258 aa13.77□□□□□ -0.21
SMARCD1-208ENST00000550280 MROH7Q68CQ1 1323 aa13.76□□□□□ -0.21
SMARCD1-208ENST00000550280 TTC41PQ6P2S7 1318 aa13.76□□□□□ -0.21
SMARCD1-208ENST00000550280 PLA2G6O60733 806 aa13.76□□□□□ -0.21
SMARCD1-208ENST00000550280 TNFAIP2Q03169 654 aa13.76□□□□□ -0.21
SMARCD1-208ENST00000550280 PPIGQ13427 754 aaKnown RBP eCLIP13.76□□□□□ -0.217e-8■■■□□ 17
SMARCD1-208ENST00000550280 ADGRE1Q14246 886 aa13.76□□□□□ -0.21
SMARCD1-208ENST00000550280 TLK2Q86UE8 772 aa13.76□□□□□ -0.21
SMARCD1-208ENST00000550280 TRERF1Q96PN7 1200 aa13.76□□□□□ -0.21
SMARCD1-208ENST00000550280 WNT8AQ9H1J5 351 aa13.76□□□□□ -0.21
SMARCD1-208ENST00000550280 CYP39A1Q9NYL5 469 aa13.76□□□□□ -0.21
SMARCD1-208ENST00000550280 PRR12Q9ULL5 1215 aa13.76□□□□□ -0.21
SMARCD1-208ENST00000550280 CTDP1Q9Y5B0 961 aaPredicted RBP13.76□□□□□ -0.21
SMARCD1-208ENST00000550280 ALAS1P13196 640 aa13.75□□□□□ -0.21
SMARCD1-208ENST00000550280 SLC1A4P43007 532 aa13.75□□□□□ -0.21
SMARCD1-208ENST00000550280 CCDC174Q6PII3 467 aa13.75□□□□□ -0.21
SMARCD1-208ENST00000550280 FAM160B2Q86V87 743 aa13.75□□□□□ -0.21
SMARCD1-208ENST00000550280 FBXO16Q8IX29 292 aaPredicted RBP13.75□□□□□ -0.21
SMARCD1-208ENST00000550280 VTI1AQ96AJ9 217 aa13.75□□□□□ -0.21
SMARCD1-208ENST00000550280 GPATCH3Q96I76 525 aa13.75□□□□□ -0.21
SMARCD1-208ENST00000550280 NAPBQ9H115 298 aa13.75□□□□□ -0.21
SMARCD1-208ENST00000550280 PRDM12Q9H4Q4 367 aa13.75□□□□□ -0.21
SMARCD1-208ENST00000550280 ZNF287Q9HBT7 754 aa13.75□□□□□ -0.21
SMARCD1-208ENST00000550280 YBX2Q9Y2T7 364 aaKnown RBP13.75□□□□□ -0.21
SMARCD1-208ENST00000550280 B4GALT4O60513 344 aa13.74□□□□□ -0.21
SMARCD1-208ENST00000550280 FDX1P10109 184 aa13.74□□□□□ -0.21
SMARCD1-208ENST00000550280 PSMC6P62333 389 aa13.74□□□□□ -0.21
SMARCD1-208ENST00000550280 PDE4BQ07343 736 aa13.74□□□□□ -0.21
SMARCD1-208ENST00000550280 ITGA7Q13683 1181 aa13.74□□□□□ -0.21
SMARCD1-208ENST00000550280 FSCN1Q16658 493 aaKnown RBP13.74□□□□□ -0.21
SMARCD1-208ENST00000550280 TTBK2Q6IQ55 1244 aa13.74□□□□□ -0.21
SMARCD1-208ENST00000550280 RCSD1Q6JBY9 416 aa13.74□□□□□ -0.21
SMARCD1-208ENST00000550280 EEPD1Q7L9B9 569 aa13.74□□□□□ -0.21
SMARCD1-208ENST00000550280 TMEM199Q8N511 208 aa13.74□□□□□ -0.21
SMARCD1-208ENST00000550280 MORC4Q8TE76 937 aa13.74□□□□□ -0.21
SMARCD1-208ENST00000550280 CHURC1Q8WUH1 139 aa13.74□□□□□ -0.21
SMARCD1-208ENST00000550280 HERVK_113Q902F9 699 aa13.74□□□□□ -0.21
SMARCD1-208ENST00000550280 FSD1Q9BTV5 496 aa13.74□□□□□ -0.21
SMARCD1-208ENST00000550280 NOC4LQ9BVI4 516 aaKnown RBP13.74□□□□□ -0.21
SMARCD1-208ENST00000550280 TRPV6Q9H1D0 765 aa13.74□□□□□ -0.21
SMARCD1-208ENST00000550280 SPC25Q9HBM1 224 aa13.74□□□□□ -0.21
SMARCD1-208ENST00000550280 IL23AQ9NPF7 189 aa13.74□□□□□ -0.21
SMARCD1-208ENST00000550280 RBAK-RBAKDNI3L0D1 243 aa13.73□□□□□ -0.21
SMARCD1-208ENST00000550280 DYNC1LI2O43237 492 aaPredicted RBP13.73□□□□□ -0.21
SMARCD1-208ENST00000550280 FGRP09769 529 aa13.73□□□□□ -0.21
SMARCD1-208ENST00000550280 CCL23P55773 120 aa13.73□□□□□ -0.21
SMARCD1-208ENST00000550280 TKFCQ3LXA3 575 aa13.73□□□□□ -0.21
SMARCD1-208ENST00000550280 PSRC1Q6PGN9 363 aaPredicted RBP13.73□□□□□ -0.21
SMARCD1-208ENST00000550280 NACAP1Q9BZK3 213 aa13.73□□□□□ -0.21
SMARCD1-208ENST00000550280 HIPK3Q9H422 1215 aa13.73□□□□□ -0.21
SMARCD1-208ENST00000550280 ANAPC4Q9UJX5 808 aa13.73□□□□□ -0.21
SMARCD1-208ENST00000550280 ISY1Q9ULR0 285 aaKnown RBP13.73□□□□□ -0.21
SMARCD1-208ENST00000550280 STX8Q9UNK0 236 aa13.73□□□□□ -0.21
SMARCD1-208ENST00000550280 REV3LO60673 3130 aa13.72□□□□□ -0.21
SMARCD1-208ENST00000550280 ASB14A6NK59 587 aa13.72□□□□□ -0.21
SMARCD1-208ENST00000550280 NFIBO00712 420 aa13.72□□□□□ -0.21
SMARCD1-208ENST00000550280 TLR3O15455 904 aaKnown RBP13.72□□□□□ -0.21
SMARCD1-208ENST00000550280 MX1P20591 662 aa13.72□□□□□ -0.21
SMARCD1-208ENST00000550280 SLC16A2P36021 539 aa13.72□□□□□ -0.21
SMARCD1-208ENST00000550280 IKQ13123 557 aaPredicted RBP13.72□□□□□ -0.21
SMARCD1-208ENST00000550280 RANBP17Q9H2T7 1088 aaKnown RBP13.72□□□□□ -0.21
SMARCD1-208ENST00000550280 NKX2-4Q9H2Z4 354 aa13.72□□□□□ -0.21
SMARCD1-208ENST00000550280 MTMR7Q9Y216 660 aa13.72□□□□□ -0.21
SMARCD1-208ENST00000550280 XIRP2A4UGR9 3374 aa13.72□□□□□ -0.21
SMARCD1-208ENST00000550280 TSPY2A6NKD2 308 aa13.71□□□□□ -0.21
SMARCD1-208ENST00000550280 ERC2O15083 957 aa13.71□□□□□ -0.21
SMARCD1-208ENST00000550280 ORC4O43929 436 aa13.71□□□□□ -0.21
SMARCD1-208ENST00000550280 ICAM1P05362 532 aa13.71□□□□□ -0.21
SMARCD1-208ENST00000550280 MYOGP15173 224 aa13.71□□□□□ -0.21
SMARCD1-208ENST00000550280 BAATQ14032 418 aaPredicted RBP13.71□□□□□ -0.21
SMARCD1-208ENST00000550280 TJAP1Q5JTD0 557 aa13.71□□□□□ -0.21
SMARCD1-208ENST00000550280 BTNL9Q6UXG8 535 aa13.71□□□□□ -0.21
SMARCD1-208ENST00000550280 NSMFQ6X4W1 530 aa13.71□□□□□ -0.21
SMARCD1-208ENST00000550280 NOL8Q76FK4 1167 aaKnown RBP13.71□□□□□ -0.21
SMARCD1-208ENST00000550280 OTOP2Q7RTS6 562 aa13.71□□□□□ -0.21
SMARCD1-208ENST00000550280 PPP1R13LQ8WUF5 828 aa13.71□□□□□ -0.21
SMARCD1-208ENST00000550280 CLEC4DQ8WXI8 215 aa13.71□□□□□ -0.21
SMARCD1-208ENST00000550280 PPM1EQ8WY54 764 aa13.71□□□□□ -0.21
SMARCD1-208ENST00000550280 SCLYQ96I15 445 aa13.71□□□□□ -0.21
SMARCD1-208ENST00000550280 CCPG1Q9ULG6 757 aa13.71□□□□□ -0.21
SMARCD1-208ENST00000550280 Q9Y3F1 56 aa13.71□□□□□ -0.21
SMARCD1-208ENST00000550280 CABYRO75952 493 aa13.7□□□□□ -0.22
SMARCD1-208ENST00000550280 FGBP02675 491 aa13.7□□□□□ -0.22
SMARCD1-208ENST00000550280 SLC3A2P08195 630 aaKnown RBP13.7□□□□□ -0.22
SMARCD1-208ENST00000550280 ALDH5A1P51649 535 aaPredicted RBP13.7□□□□□ -0.22
SMARCD1-208ENST00000550280 RABGGTBP53611 331 aa13.7□□□□□ -0.22
SMARCD1-208ENST00000550280 AKNAD1Q5T1N1 836 aa13.7□□□□□ -0.22
SMARCD1-208ENST00000550280 IQSEC1Q6DN90 963 aa13.7□□□□□ -0.22
SMARCD1-208ENST00000550280 SLC30A10Q6XR72 485 aa13.7□□□□□ -0.22
SMARCD1-208ENST00000550280 FAM227BQ96M60 508 aa13.7□□□□□ -0.22
SMARCD1-208ENST00000550280 ALDH8A1Q9H2A2 487 aaPredicted RBP13.7□□□□□ -0.22
SMARCD1-208ENST00000550280 VTA1Q9NP79 307 aa13.7□□□□□ -0.22
SMARCD1-208ENST00000550280 TRMT13Q9NUP7 481 aaKnown RBP13.7□□□□□ -0.22
SMARCD1-208ENST00000550280 FRMPD2Q68DX3 1309 aaPredicted RBP13.69□□□□□ -0.22
SMARCD1-208ENST00000550280 A0A0D9SFI3 127 aa13.69□□□□□ -0.22
SMARCD1-208ENST00000550280 RBM47A0AV96 593 aaKnown RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms