RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 RABEP2Q9H5N1 569 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 DNM2P50570 870 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 GALNT17Q6IS24 598 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 LSM14BQ9BX40 385 aaKnown RBP16.65■□□□□ 0.26
CUX1-214ENST00000550008 SMIM23A6NLE4 172 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 USP17L15C9J2P7 530 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 USP17L13C9JLJ4 530 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 USP17L11C9JVI0 530 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 USP17L18D6R9N7 530 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 USP17L22D6RA61 530 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 USP17L17D6RBQ6 530 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 USP17L19D6RCP7 530 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 USP17L20D6RJB6 530 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 CCDC172P0C7W6 258 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 USP17L24Q0WX57 530 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 BIRC3Q13489 604 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 PFKFB3Q16875 520 aaPredicted RBP16.65■□□□□ 0.26
CUX1-214ENST00000550008 USP17L6PQ6QN14 398 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 CCDC84Q86UT8 332 aaPredicted RBP16.65■□□□□ 0.26
CUX1-214ENST00000550008 TXNRD3Q86VQ6 643 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 NT5C3AQ9H0P0 336 aa16.65■□□□□ 0.26
CUX1-214ENST00000550008 PNPLA7Q6ZV29 1317 aa16.64■□□□□ 0.25
CUX1-214ENST00000550008 ANKRD62A6NC57 917 aa16.64■□□□□ 0.25
CUX1-214ENST00000550008 BUB1O43683 1085 aa16.64■□□□□ 0.25
CUX1-214ENST00000550008 SF3B3Q15393 1217 aaKnown RBP16.64■□□□□ 0.25
CUX1-214ENST00000550008 ASPRV1Q53RT3 343 aa16.64■□□□□ 0.25
CUX1-214ENST00000550008 AMNQ9BXJ7 453 aa16.64■□□□□ 0.25
CUX1-214ENST00000550008 GTPBP4Q9BZE4 634 aaKnown RBP16.64■□□□□ 0.25
CUX1-214ENST00000550008 EPN1Q9Y6I3 576 aaPredicted RBP16.64■□□□□ 0.25
CUX1-214ENST00000550008 GPATCH4Q5T3I0 446 aaKnown RBP16.64■□□□□ 0.25
CUX1-214ENST00000550008 VSTM4Q8IW00 320 aa16.64■□□□□ 0.25
CUX1-214ENST00000550008 SMCR8Q8TEV9 937 aaPredicted RBP16.64■□□□□ 0.25
CUX1-214ENST00000550008 DPF2Q92785 391 aa16.64■□□□□ 0.25
CUX1-214ENST00000550008 TRIM31Q9BZY9 425 aa16.64■□□□□ 0.25
CUX1-214ENST00000550008 OGFRQ9NZT2 677 aa16.64■□□□□ 0.25
CUX1-214ENST00000550008 STX10O60499 249 aa16.64■□□□□ 0.25
CUX1-214ENST00000550008 ASIC2Q16515 512 aa16.64■□□□□ 0.25
CUX1-214ENST00000550008 NUP58Q9BVL2 599 aa16.64■□□□□ 0.25
CUX1-214ENST00000550008 ZNF408Q9H9D4 720 aa16.64■□□□□ 0.25
CUX1-214ENST00000550008 POLR2FP61218 127 aaKnown RBP16.63■□□□□ 0.25
CUX1-214ENST00000550008 C3orf67Q6ZVT6 689 aa16.63■□□□□ 0.25
CUX1-214ENST00000550008 METTL16Q86W50 562 aaKnown RBP16.63■□□□□ 0.25
CUX1-214ENST00000550008 SLC4A9Q96Q91 983 aa16.63■□□□□ 0.25
CUX1-214ENST00000550008 SELENOOQ9BVL4 669 aa16.63■□□□□ 0.25
CUX1-214ENST00000550008 GINS2Q9Y248 185 aa16.63■□□□□ 0.25
CUX1-214ENST00000550008 CAPN2P17655 700 aa16.63■□□□□ 0.25
CUX1-214ENST00000550008 CYP27A1Q02318 531 aa16.63■□□□□ 0.25
CUX1-214ENST00000550008 KMT5BQ4FZB7 885 aa16.63■□□□□ 0.25
CUX1-214ENST00000550008 PLA2G4DQ86XP0 818 aa16.63■□□□□ 0.25
CUX1-214ENST00000550008 DHX40Q8IX18 779 aaKnown RBP16.63■□□□□ 0.25
CUX1-214ENST00000550008 CHURC1Q8WUH1 139 aa16.63■□□□□ 0.25
CUX1-214ENST00000550008 HSF2BPO75031 334 aa16.63■□□□□ 0.25
CUX1-214ENST00000550008 GH2P01242 217 aa16.63■□□□□ 0.25
CUX1-214ENST00000550008 EEF2P13639 858 aaKnown RBP16.63■□□□□ 0.25
CUX1-214ENST00000550008 CDC25BP30305 580 aa16.63■□□□□ 0.25
CUX1-214ENST00000550008 PRR5LQ6MZQ0 368 aa16.63■□□□□ 0.25
CUX1-214ENST00000550008 TICAM2Q86XR7 235 aa16.63■□□□□ 0.25
CUX1-214ENST00000550008 CCDC17Q96LX7 622 aa16.63■□□□□ 0.25
CUX1-214ENST00000550008 TXNRD1Q16881 649 aa16.63■□□□□ 0.25
CUX1-214ENST00000550008 PAXIP1Q6ZW49 1069 aaPredicted RBP16.63■□□□□ 0.25
CUX1-214ENST00000550008 SLC35F6Q8N357 371 aa16.63■□□□□ 0.25
CUX1-214ENST00000550008 SUPT20HQ8NEM7 779 aa16.63■□□□□ 0.25
CUX1-214ENST00000550008 WDR19Q8NEZ3 1342 aa16.62■□□□□ 0.25
CUX1-214ENST00000550008 TLDC2A0PJX2 215 aa16.62■□□□□ 0.25
CUX1-214ENST00000550008 TEX33O43247 280 aa16.62■□□□□ 0.25
CUX1-214ENST00000550008 ADAM9Q13443 819 aa16.62■□□□□ 0.25
CUX1-214ENST00000550008 KLHL7Q8IXQ5 586 aa16.62■□□□□ 0.25
CUX1-214ENST00000550008 KANSL2Q9H9L4 492 aa16.62■□□□□ 0.25
CUX1-214ENST00000550008 DISC1Q9NRI5 854 aa16.62■□□□□ 0.25
CUX1-214ENST00000550008 STK36Q9NRP7 1315 aa16.62■□□□□ 0.25
CUX1-214ENST00000550008 SHTN1A0MZ66 631 aa16.62■□□□□ 0.25
CUX1-214ENST00000550008 KRT5P13647 590 aa16.62■□□□□ 0.25
CUX1-214ENST00000550008 COA1Q9GZY4 146 aa16.62■□□□□ 0.25
CUX1-214ENST00000550008 FLOT1O75955 427 aa16.62■□□□□ 0.25
CUX1-214ENST00000550008 ABCB4P21439 1286 aa16.62■□□□□ 0.25
CUX1-214ENST00000550008 SFMBT2Q5VUG0 894 aa16.62■□□□□ 0.25
CUX1-214ENST00000550008 KCNB2Q92953 911 aa16.62■□□□□ 0.25
CUX1-214ENST00000550008 KCNF1Q9H3M0 494 aa16.62■□□□□ 0.25
CUX1-214ENST00000550008 ARHGAP23Q9P227 1491 aa16.62■□□□□ 0.25
CUX1-214ENST00000550008 PSDA5PKW4 1024 aaPredicted RBP16.61■□□□□ 0.25
CUX1-214ENST00000550008 AKR1B1P15121 316 aa16.61■□□□□ 0.25
CUX1-214ENST00000550008 SEPT2Q15019 361 aa16.61■□□□□ 0.25
CUX1-214ENST00000550008 IQCB1Q15051 598 aa16.61■□□□□ 0.25
CUX1-214ENST00000550008 KRT31Q15323 416 aa16.61■□□□□ 0.25
CUX1-214ENST00000550008 ZNF658Q5TYW1 1059 aaPredicted RBP16.61■□□□□ 0.25
CUX1-214ENST00000550008 C12orf60Q5U649 245 aa16.61■□□□□ 0.25
CUX1-214ENST00000550008 CC2D2BQ6DHV5 1058 aa16.61■□□□□ 0.25
CUX1-214ENST00000550008 FLAD1Q8NFF5 587 aa16.61■□□□□ 0.25
CUX1-214ENST00000550008 P2RX5Q93086 422 aa16.61■□□□□ 0.25
CUX1-214ENST00000550008 ARMCX3Q9UH62 379 aaPredicted RBP16.61■□□□□ 0.25
CUX1-214ENST00000550008 MROH7-TTC4A0A0A0MT08 1334 aa16.61■□□□□ 0.25
CUX1-214ENST00000550008 USP17L10C9JJH3 530 aa16.61■□□□□ 0.25
CUX1-214ENST00000550008 SMIM22K7EJ46 135 aa16.61■□□□□ 0.25
CUX1-214ENST00000550008 TNFAIP3P21580 790 aa16.61■□□□□ 0.25
CUX1-214ENST00000550008 RNF187Q5TA31 235 aaPredicted RBP16.61■□□□□ 0.25
CUX1-214ENST00000550008 GOLGA6L10A0A0M3HER8 536 aa16.61■□□□□ 0.25
CUX1-214ENST00000550008 GCOM1H8Y6P7 765 aaPredicted RBP16.61■□□□□ 0.25
CUX1-214ENST00000550008 CALUO43852 315 aaPredicted RBP16.61■□□□□ 0.25
CUX1-214ENST00000550008 CEP104O60308 925 aa16.61■□□□□ 0.25
CUX1-214ENST00000550008 POLR2MP0CAP2 368 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms